RNU2-31P (RNA, U2 small nuclear 31, pseudogene) - Rat Genome Database

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Gene: RNU2-31P (RNA, U2 small nuclear 31, pseudogene) Homo sapiens
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Symbol: RNU2-31P
Name: RNA, U2 small nuclear 31, pseudogene
RGD ID: 10400260
HGNC Page HGNC:48524
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Mouse
Rat
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU2-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383159,808,416 - 159,808,570 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3159,808,416 - 159,808,570 (-)EnsemblGRCh38hg38GRCh38
GRCh373159,526,205 - 159,526,359 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3q25.33NCBI
CHM1_13159,489,100 - 159,489,254 (-)NCBICHM1_1
T2T-CHM13v2.03162,582,990 - 162,583,144 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model




RNU2-31P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383159,808,416 - 159,808,570 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3159,808,416 - 159,808,570 (-)EnsemblGRCh38hg38GRCh38
GRCh373159,526,205 - 159,526,359 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3q25.33NCBI
CHM1_13159,489,100 - 159,489,254 (-)NCBICHM1_1
T2T-CHM13v2.03162,582,990 - 162,583,144 (-)NCBIT2T-CHM13v2.0
Gm25572
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39358,886,278 - 58,886,447 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl358,886,276 - 58,886,447 (-)EnsemblGRCm39 Ensembl
GRCm38358,978,857 - 58,979,026 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl358,978,855 - 58,979,026 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map3DNCBI
LOC120098014
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81734,952,260 - 34,952,366 (-)NCBIGRCr8
mRatBN7.21734,743,682 - 34,743,788 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1734,743,682 - 34,743,788 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map17p12NCBI

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Predicted Target Of
Summary Value
Count of predictions:83
Count of miRNA genes:81
Interacting mature miRNAs:81
Transcripts:ENST00000516954
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300026BP36_HBlood pressure QTL 36 (human)4.04Blood pressurehypertension susceptibility3135720453161720453Human
1298415BP24_HBlood pressure QTL 24 (human)2.9Blood pressurehypertension susceptibility3135720453161720453Human




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
239 264 190 276 276 109 200 1 24 26 17 216 517 650 1 230 86 170 155 10


RefSeq Transcripts NG_043583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC021654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000516954
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3159,808,416 - 159,808,570 (-)Ensembl


Database
Acc Id
Source(s)
COSMIC RNU2-31P COSMIC
Ensembl Genes ENSG00000252763 Ensembl, ENTREZGENE
GTEx ENSG00000252763 GTEx
HGNC ID HGNC:48524 ENTREZGENE
Human Proteome Map RNU2-31P Human Proteome Map
NCBI Gene RNU2-31P ENTREZGENE