Gm22627 (predicted gene, 22627) - Rat Genome Database

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Gene: Gm22627 (predicted gene, 22627) Mus musculus
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Symbol: Gm22627
Name: predicted gene, 22627
RGD ID: 14998250
MGI Page MGI
Description:
Type: snorna
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39759,183,134 - 59,183,212 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl759,183,134 - 59,183,212 (-)EnsemblGRCm39 Ensembl
GRCm38759,533,386 - 59,533,464 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl759,533,386 - 59,533,464 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map7B5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




.

Predicted Target Of
Summary Value
Count of predictions:196
Count of miRNA genes:180
Interacting mature miRNAs:193
Transcripts:ENSMUST00000178127
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 42 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73444786968448018Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74114882075148965Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
1301465Egrm3_mearly growth rate (mouse)Not determined75732612191326352Mouse
1300952Hcs1_mhepatocarcinogenesis susceptibility 1 (mouse)Not determined75732612191326352Mouse

1 to 10 of 42 rows





RefSeq Transcripts XR_004934488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC168073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000178127
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl759,533,386 - 59,533,464 (-)Ensembl
Ensembl Acc Id: ENSMUST00000239797
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl759,183,134 - 59,183,212 (-)Ensembl
RefSeq Acc Id: XR_004934488
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39759,183,134 - 59,183,212 (-)NCBI
Sequence:


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000094458 Ensembl
  ENSMUSG00000118873 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000239797 ENTREZGENE
MGD MGI:5452404 ENTREZGENE
NCBI Gene Gm22627 ENTREZGENE
PhenoGen Gm22627 PhenoGen
RNAcentral URS00006838B0 RNACentral