Gm25038 (predicted gene, 25038) - Rat Genome Database

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Gene: Gm25038 (predicted gene, 25038) Mus musculus
Analyze
Symbol: Gm25038
Name: predicted gene, 25038
RGD ID: 14997786
MGI Page MGI
Description: Acts upstream of or within response to bacterium.
Type: snorna
RefSeq Status: MODEL
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391678,220,618 - 78,220,747 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1678,220,618 - 78,220,747 (-)EnsemblGRCm39 Ensembl
GRCm381678,423,730 - 78,423,859 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1678,423,730 - 78,423,859 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map16C3.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:23012479  


Genomics

Comparative Map Data
Gm25038
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391678,220,618 - 78,220,747 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1678,220,618 - 78,220,747 (-)EnsemblGRCm39 Ensembl
GRCm381678,423,730 - 78,423,859 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1678,423,730 - 78,423,859 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map16C3.1NCBI
SNORA75B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38417,320,746 - 17,320,882 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl417,320,746 - 17,320,882 (-)EnsemblGRCh38hg38GRCh38
GRCh37417,322,369 - 17,322,505 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map4p15.32NCBI
T2T-CHM13v2.0417,302,431 - 17,302,567 (-)NCBIT2T-CHM13v2.0

Variants

.
Variants in Gm25038
12 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:68
Count of miRNA genes:67
Interacting mature miRNAs:67
Transcripts:ENSMUST00000082928
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301394Eae11_msusceptibility to experimental allergic encephalomyelitis 11 (mouse)Not determined165356189187562035Mouse
1302194Pgia10_mproteoglycan induced arthritis 10 (mouse)Not determined166860072298008968Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
1302096Aod1a_mautoimmune ovarian dysgenesis 1a (mouse)Not determined163544664392573008Mouse
4141212Imraq3_mimmune response to AAV2 QTL 3 (mouse)Not determined164438335078383506Mouse
1558740Bpq9_mblood pressure QTL 9 (mouse)Not determined166332733697327472Mouse
1301719Remslp3_mrapid eye movement sleep 3 (mouse)Not determined164438335078383506Mouse
1357778Diobq_mdiet-induced obesity QTL (mouse)Not determined164219781782331174Mouse
4141113Tgq28_mtriglyceride QTL 28 (mouse)Not determined6298664696986646Mouse
1301364Lith14_mlithogenic gene 14 (mouse)Not determined165566184689661961Mouse
4142262Lmr18_mleishmaniasis resistance 18 (mouse)Not determined166912761198008968Mouse
11049573Lmr18b_mleishmaniasis resistance 18b (mouse)166912761198008968Mouse
1301598Renf2_mrenal failure 2 (mouse)Not determined167038025298008968Mouse
11049574Lmr18a_mleishmaniasis resistance 18a (mouse)166912761198008968Mouse
11522753Cocia19_mcocaine-induced activity, QTL 19 (mouse)166925448298008968Mouse
10412076Pod_mplasticity of ocular dominance (mouse)Not determined167354484584350326Mouse
1300928Etia_methanol induced activation (mouse)Not determined166331390797314016Mouse
14928310Manh80_mmandible shape 80 (mouse)164821984182219841Mouse
1301125Sluc27_msusceptibility to lung cancer 27 (mouse)Not determined166160864495608764Mouse
12880403Sefq1_mstress effect QTL 1 (mouse)167469664378896643Mouse
1357517Bwtn1_mbody weight at necropsy 1 (mouse)Not determined162001932985600826Mouse
26884416Bzwq5_mbi-zygomatic width QTL 5, 5 week (mouse)163732036284696888Mouse
1301032Tauph_mtau phosphorylation (mouse)Not determined166907613298008968Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004939375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC098883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000082928
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1678,220,618 - 78,220,747 (-)Ensembl
GRCm38.p6 Ensembl1678,423,730 - 78,423,859 (-)Ensembl
RefSeq Acc Id: XR_004939375
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391678,220,618 - 78,220,747 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000064862 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000082928 ENTREZGENE
MGD MGI:5454815 ENTREZGENE
NCBI Gene Gm25038 ENTREZGENE
PhenoGen Gm25038 PhenoGen