Gm24228 (predicted gene, 24228) - Rat Genome Database

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Gene: Gm24228 (predicted gene, 24228) Mus musculus
Analyze
Symbol: Gm24228
Name: predicted gene, 24228
RGD ID: 14997433
MGI Page MGI
Description:
Type: snorna
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391816,007,718 - 16,007,846 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1816,007,718 - 16,007,846 (+)EnsemblGRCm39 Ensembl
GRCm381815,874,661 - 15,874,789 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1815,874,661 - 15,874,789 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map18A1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm24228
4 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:119
Count of miRNA genes:114
Interacting mature miRNAs:117
Transcripts:ENSMUST00000158829
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11354953Mom21_mmodifier of Min 21 (mouse)18128893823Mouse
13207585Mwmlpt3_mMorris water maze latency to platform, training, 3 (mouse)18133547739Mouse
13207589Mwmlpa3_mMorris water maze latency to platform, all, 3 (mouse)18133547739Mouse
1558873Hrtfm7_mheart failure modifier 7 (mouse)Not determined18808696442087106Mouse
4142127Rafaril_mRafar interacting locus (mouse)Not determined18123108555Mouse
14928307Manh83_mmandible shape 83 (mouse)18126902168Mouse
13432188Actrse3_mactivity response to saline/ethanol 3 (mouse)181237454818574548Mouse
12801458Intmrm3_mintima/media ratio modifier 3 (mouse)18131720756Mouse
13432190Actrse5_mactivity response to saline/ethanol 5 (mouse)181217454817574548Mouse
13504732Cath6_mcarotid atherosclerosis 6 (mouse)181363712647637126Mouse
12801462Intim3_mintima modifier 3 (mouse)18131720756Mouse
4142250Idd21.3_minsulin dependent diabetes susceptibility 21.3 (mouse)Not determined18610840421646477Mouse
1558849W3q15_mweight 3 weeks QTL 15 (mouse)Not determined18504111961272643Mouse
1357603Mom3_mmodifier of Min 3 (mouse)Not determined181403002367098962Mouse
27226723Tibw9_mtibia width 9, proximal, 16 week (mouse)18320000060933072Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004940071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC102377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000158829
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1816,007,718 - 16,007,846 (+)Ensembl
GRCm38.p6 Ensembl1815,874,661 - 15,874,789 (+)Ensembl
RefSeq Acc Id: XR_004940071
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391816,007,718 - 16,007,846 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000089454 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000158829 ENTREZGENE
MGD MGI:5454005 ENTREZGENE
NCBI Gene Gm24228 ENTREZGENE
PhenoGen Gm24228 PhenoGen