LOC122152299 (Sharpr-MPRA regulatory region 7160) - Rat Genome Database

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Gene: LOC122152299 (Sharpr-MPRA regulatory region 7160) Homo sapiens
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Symbol: LOC122152299
Name: Sharpr-MPRA regulatory region 7160
RGD ID: 149736018
Description: This genomic sequence was predicted to be a transcriptional regulatory region based on chromatin state analysis from the ENCODE (ENCyclopedia Of DNA Elements) project. It was validated as a functional repressive element by the Sharpr-MPRA technique (Systematic high-resolution activation and repression profiling with reporter tiling using massively parallel reporter assays) in HepG2 liver carcinoma cells (group: HepG2 Repressive non-DNase unmatched - State 24:Quies, heterochromatin/dead zone). [provided by RefSeq, Jul 2021]
Type: biological-region
RefSeq Status: REVIEWED
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381217,554,847 - 217,555,141 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371217,728,189 - 217,728,483 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1qNCBI
T2T-CHM13v2.01216,796,164 - 216,796,458 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LOC122152299HumanUsher syndrome  IAGPRGD:134354448554872ClinVar Annotator: match by term: Usher syndromeClinVarPMID:28041643

PMID:27701403  



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1 to 10 of 239 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
NM_000146.4(FTL):c.169G>A (p.Glu57Lys) single nucleotide variant FTL-related disorder [RCV004751285]|Hereditary hyperferritinemia with congenital cataracts [RCV000395171]|Hereditary hyperferritinemia with congenital cataracts [RCV003103735]|Neuroferritinopathy [RCV000311515]|not provided [RCV000861621]|not specified [RCV003323416]|sporadic abdominal aortic aneurysm [RCV000144502] Chr19:48965836 [GRCh38]
Chr19:49469093 [GRCh37]
Chr19:19q13.33
likely pathogenic|benign|likely benign|uncertain significance
NM_000146.4(FTL):c.163T>C (p.Leu55=) single nucleotide variant Glycogen storage disease due to muscle and heart glycogen synthase deficiency [RCV000370536]|Hereditary hyperferritinemia with congenital cataracts [RCV000369896]|Hereditary hyperferritinemia with congenital cataracts [RCV001516688]|L-ferritin deficiency [RCV001701526]|Neuroferritinopathy [RCV000315169]|not provided [RCV000839535]|not specified [RCV000146000]|sporadic abdominal aortic aneurysm [RCV000144503] Chr19:48965830 [GRCh38]
Chr19:49469087 [GRCh37]
Chr19:19q13.33
likely pathogenic|benign
NM_000146.4(FTL):c.-182C>T single nucleotide variant not specified [RCV003479167] Chr19:48965326 [GRCh38]
Chr19:49468583 [GRCh37]
Chr19:19q13.33
pathogenic|uncertain significance
FTL, 1-BP INS, 460A insertion Neuroferritinopathy [RCV000017947] Chr19:19q13.3-q13.4 pathogenic
NM_000146.4(FTL):c.498_499dup (p.Phe167fs) microsatellite Neuroferritinopathy [RCV000017951] Chr19:48966701..48966702 [GRCh38]
Chr19:49469958..49469959 [GRCh37]
Chr19:19q13.33
pathogenic
NM_000146.4(FTL):c.-160A>G single nucleotide variant Hereditary hyperferritinemia with congenital cataracts [RCV000017938]|Hereditary hyperferritinemia with congenital cataracts [RCV001061778]|not provided [RCV002274882] Chr19:48965348 [GRCh38]
Chr19:49468605 [GRCh37]
Chr19:19q13.33
pathogenic
NM_000146.4(FTL):c.-159G>C single nucleotide variant Hereditary hyperferritinemia with congenital cataracts [RCV000017939] Chr19:48965349 [GRCh38]
Chr19:49468606 [GRCh37]
Chr19:19q13.33
pathogenic
NM_000146.4(FTL):c.-168G>A single nucleotide variant FTL-related disorder [RCV004751214]|Hereditary hyperferritinemia with congenital cataracts [RCV000017940]|Hereditary hyperferritinemia with congenital cataracts [RCV001380757]|not provided [RCV001723575] Chr19:48965340 [GRCh38]
Chr19:49468597 [GRCh37]
Chr19:19q13.33
pathogenic|likely pathogenic
NM_000146.4(FTL):c.-189_-161del deletion Hereditary hyperferritinemia with congenital cataracts [RCV000017942] Chr19:48965318..48965346 [GRCh38]
Chr19:49468575..49468603 [GRCh37]
Chr19:19q13.33
pathogenic
NM_000146.4(FTL):c.-168G>T single nucleotide variant FTL-related disorder [RCV003398536]|Hereditary hyperferritinemia with congenital cataracts [RCV000017943]|Hereditary hyperferritinemia with congenital cataracts [RCV001386171]|not provided [RCV001093251] Chr19:48965340 [GRCh38]
Chr19:49468597 [GRCh37]
Chr19:19q13.33
pathogenic
1 to 10 of 239 rows





RefSeq Transcripts NG_076573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL354659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles



Database
Acc Id
Source(s)
COSMIC LOC122152299 COSMIC
GTEx LOC122152299 GTEx
Human Proteome Map LOC122152299 Human Proteome Map
NCBI Gene LOC122152299 ENTREZGENE