LINC02810 (long intergenic non-protein coding RNA 2810)

Gene: LINC02810 (long intergenic non-protein coding RNA 2810) Homo sapiens

Analyze

Symbol:

LINC02810

Name:

long intergenic non-protein coding RNA 2810

RGD ID:

14401789

HGNC Page

HGNC:54342

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

MODEL

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	17,717,196 - 17,722,347 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	17,717,625 - 17,749,978 (+)	Ensembl	GRCh38		hg38	GRCh38
Cytogenetic Map	1	p36.13	NCBI
CHM1_1	1	18,152,384 - 18,157,102 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	17,532,864 - 17,537,654 (+)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	85
Count of miRNA genes:	79
Interacting mature miRNAs:	84
Transcripts:	ENST00000430540
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	adipose tissue	appendage
High
Medium									2
Low	3	21	7	7	5	7	5	4	3	6	352	3			2
Below cutoff	160	409	99	42	66	33	341	175	422	40	100	86	9	52	240

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_001737782	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002958656	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002958657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002958658	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_007065509	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_007065510	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_007065511	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_007069909	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_007069910	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_007069911	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_007069912	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AL358593	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068277	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENST00000430540

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	1	17,717,687 - 17,749,978 (+)	Ensembl

RefSeq Acc Id:

ENST00000653706

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	1	17,717,677 - 17,722,353 (+)	Ensembl

RefSeq Acc Id:

ENST00000669051

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	1	17,717,625 - 17,722,352 (+)	Ensembl

RefSeq Acc Id:

ENST00000670395

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	1	17,717,631 - 17,722,347 (+)	Ensembl

RefSeq Acc Id:

XR_002958656

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	1	17,718,135 - 17,722,347 (+)	NCBI

Sequence:

show sequence

TGGAGTTGGTCCTGACTCGGGGGCCTGTCAGTCATCGGCCAAGGGCCAGGCTTTGGGGTGTCGA
CTCCCACACAGCTCAGCTCCCTGAAGATGTGGGCACGGTGGTGGTGGGGGCTGCTGAAGAGTTG
CAGATGCAGCCACTGGAGGGGAGGCTGAGGTCAGTAGCCAGGCTCACAGGGACGACAATGGGAT
GGGAAGCAACACCTGACGGGCTCAGCTACAGGTGCTGACGGATTCACAGGCAGGTGGCAGAAGG
CAGTCAAATAAATGAGACAATACAGCGCCCTCCCTGCGACCACACACACCGCTCACGCCTGTGA
GGACATGGAAGCACAGGGAGGTTATGCCACTCGCCCAAAGACAACTAATCAGTGACAGCTGAGA
CTTGGACTGCAGAACCTACACTTTATAACTATTTTACAGTTCTGGGCGTCACGGAATCTTGCAT
GAAGAGCCCCTAACCTGGCCCGGGTGGAGGCTCTGCTTCCTCAGTGTCAGCATCATTCACAGCA
GGCATGTCCCTCCTGCCTCCAAGAGAGTCACCAGCAGCTTCCTCCTCCACATCTGTGAGTAAAT
GAGAGGGTCTATTCCACCCAATAACTCAAATCCCAGTTTCAGGATTTGACCTGTGGTTGGTCAG
ACTAGGGACACAAGCCCATTCCTGAGCCAATCACTGTGGCTGAAGAGGTGGGAGACACTGATTG
GTCTAAGCCAGTCAAGCACTCTCAAGGCCAAAGTGCATGGGCAAGAAATTTAGGACAAGGGGAG
GAAGAAAGAAAAGAAAAGAGAATATCAAGGAGGCAAATGACAAATAAATACCCACTCCTTTCTT
CCCACGAGAGAGATATTATTCCCCCCATTTCATGGAGGAGGAAACTGACGATCAGAGCAGCCAG
GAAACAGGATGGCGTTGTCTGCTGAGGGACGGTGTGTTCCCTGGAGAGGAGATCCAGCTTGCCA
TTGTGGGTTTCTTACAGCAAAAATCCTGTGTGTACACATATGCTGAACAAGGCGCACACAGTCT
TCATACTTCTTTCCCCAAATCCACTGTTGTACCTCACTCTGGAAACCAAAGAATACAAATGGAG
ATGAGGCTAATTTTTGCCCCTCAAATTGGCAAAGGTGAATAAAACCATGTTTCTTGGGCTGTG

hide sequence

RefSeq Acc Id:

XR_002958658

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	1	17,718,135 - 17,722,347 (+)	NCBI

Sequence:

show sequence

TGGAGTTGGTCCTGACTCGGGGGCCTGTCAGTCATCGGCCAAGGGCCAGGCTTTGGGGTGTCGA
CTCCCACACAGCTCAGCTCCCTGAAGATGTGGGCACGGTGGTGGTGGGGGCTGCTGAAGAGTTG
CAGATGCAGCCACTGGAGGGGAGGCTGAGGTCAGTAGCCAGGCTCACAGGGACGACAATGGGAT
GGGAAGCAACACCTGACGGGCTCAGCTACAGGTGCTGACGGATTCACAGGCAGGTGGCAGAAGG
CAGTCAAATAAATGAGACAATACAGCGCCCTCCCTGCGACCACACACACCGCTCACGCCTGTGA
GGACATGGAAGCACAGGGAGGTTATGCCACTCGCCCAAAGACAACTAATCAGTGACAGCTGAGA
CTTGGACTGCAGAACCTACACTTTATAACTATTTTACAGTTCTGGGCGTCACGGAATCTTGCAT
GAAGAGCCCCTAACCTGGCCCGGGTGGAGGTCAGGGAGGTCTTCCTGGAAGAGGGGGTTCTTGG
CAGCAACTTGCTGGATTTGGTGTTCCCTGTTGGTTGGCTCTGCTTCCTCAGTGTCAGCATCATT
CACAGCAGGCATGTCCCTCCTGCCTCCAAGAGAGTCACCAGCAGCTTCCTCCTCCACATCTGTG
AGTAAATGAGAGGGTCTATTCCACCCAATAACTCAAATCCCAGTTTCAGGATTTGACCTGTGGT
TGGTCAGACTAGGGACACAAGCCCATTCCTGAGCCAATCACTGTGGCTGAAGAGGTGGGAGACA
CTGATTGGTCTAAGCCAGTCAAGCACTCTCAAGGCCAAAGTGCATGGGCAAGAAATTTAGGACA
AGGGGAGGAAGAAAGAAAAGAAAAGAGAATATCAAGGAGGCAAATGACAAATAAATACCCACTC
CTTTCTTCCCACGAGAGAGATATTATTCCCCCCATTTCATGGAGGAGGAAACTGACGATCAGAG
CAGCCAGGAAACAGGATGGCGTTGTCTGCTGAGGGACGGTGTGTTCCCTGGAGAGGAGATCCAG
CTTGCCATTGTGGGTTTCTTACAGCAAAAATCCTGTGTGTACACATATGCTGAACAAGGCGCAC
ACAGTCTTCATACTTCTTTCCCCAAATCCACTGTTGTACCTCACTCTGGAAACCAAAGAATACA
AATGGAGATGAGGCTAATTTTTGCCCCTCAAATTGGCAAAGGTGAATAAAACCATGTTTCTTGG
GCTGT

hide sequence

RefSeq Acc Id:

XR_007065509

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	1	17,717,196 - 17,719,167 (+)	NCBI

RefSeq Acc Id:

XR_007065510

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	1	17,717,573 - 17,722,347 (+)	NCBI

RefSeq Acc Id:

XR_007065511

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	1	17,718,135 - 17,722,347 (+)	NCBI

RefSeq Acc Id:

XR_007069909

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	1	17,533,426 - 17,537,654 (+)	NCBI

RefSeq Acc Id:

XR_007069910

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	1	17,533,426 - 17,537,653 (+)	NCBI

RefSeq Acc Id:

XR_007069911

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	1	17,532,864 - 17,537,601 (+)	NCBI

RefSeq Acc Id:

XR_007069912

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	1	17,533,426 - 17,537,654 (+)	NCBI

Additional Information

External Database Links

Database	Acc Id	Source(s)
COSMIC	LINC02810	COSMIC
Ensembl Genes	ENSG00000236648	Ensembl, ENTREZGENE
Ensembl Transcript	ENST00000669051	ENTREZGENE
GTEx	ENSG00000236648	GTEx
HGNC ID	HGNC:54342	ENTREZGENE
Human Proteome Map	LINC02810	Human Proteome Map
NCBI Gene	LINC02810	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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