ALKBH1 (alkB homolog 1, histone H2A dioxygenase) - Rat Genome Database

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Gene: ALKBH1 (alkB homolog 1, histone H2A dioxygenase) Sus scrofa
Analyze
Symbol: ALKBH1
Name: alkB homolog 1, histone H2A dioxygenase
RGD ID: 14291531
Description: ENCODES a protein that exhibits 2-oxoglutarate-dependent dioxygenase activity (inferred); broad specificity oxidative DNA demethylase activity (inferred); chemoattractant activity (inferred); INVOLVED IN cell differentiation (inferred); developmental growth (inferred); DNA repair (inferred); FOUND IN endoplasmic reticulum (inferred); euchromatin (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: alkB, alkylation repair homolog 1; nucleic acid dioxygenase ALKBH1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7100,676,632 - 100,710,401 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17100,676,778 - 100,710,414 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ALKBH1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7100,676,632 - 100,710,401 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17100,676,778 - 100,710,414 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ALKBH1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381477,672,404 - 77,708,023 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1477,672,404 - 77,708,023 (-)EnsemblGRCh38hg38GRCh38
GRCh371478,138,747 - 78,174,366 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361477,208,502 - 77,244,109 (-)NCBINCBI36Build 36hg18NCBI36
Build 341477,209,146 - 77,244,097NCBI
Celera1458,177,259 - 58,212,868 (-)NCBICelera
Cytogenetic Map14q24.3NCBI
HuRef1458,304,737 - 58,340,347 (-)NCBIHuRef
CHM1_11478,078,214 - 78,113,828 (-)NCBICHM1_1
T2T-CHM13v2.01471,881,741 - 71,917,378 (-)NCBIT2T-CHM13v2.0
Nrp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391287,489,618 - 87,490,787 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1287,472,610 - 87,490,787 (-)EnsemblGRCm39 Ensembl
GRCm381287,442,848 - 87,444,017 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1287,425,840 - 87,444,017 (-)EnsemblGRCm38mm10GRCm38
MGSCv371288,783,798 - 88,784,967 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1288,907,470 - 88,908,639 (-)NCBICelera
Cytogenetic Map12D2NCBI
Alkbh1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86112,799,234 - 112,819,708 (-)NCBIGRCr8
mRatBN7.26107,068,301 - 107,088,784 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6107,068,475 - 107,088,759 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6107,236,731 - 107,257,698 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06107,535,548 - 107,556,515 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06106,905,246 - 106,926,213 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06111,456,096 - 111,476,829 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6111,456,187 - 111,477,090 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06120,737,001 - 120,757,497 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46111,662,506 - 111,682,061 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16111,667,836 - 111,685,567 (-)NCBI
Celera6104,888,877 - 104,908,497 (-)NCBICelera
Cytogenetic Map6q31NCBI
Alkbh1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554381,531,114 - 1,556,481 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554381,531,114 - 1,556,483 (-)NCBIChiLan1.0ChiLan1.0
ALKBH1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21578,758,377 - 78,793,982 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11477,975,514 - 78,010,487 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01458,227,094 - 58,262,107 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11477,428,033 - 77,462,905 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1477,428,033 - 77,462,905 (-)Ensemblpanpan1.1panPan2
ALKBH1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1850,444,994 - 50,471,151 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl850,445,748 - 50,471,135 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha850,132,626 - 50,158,585 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0850,679,265 - 50,705,466 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl850,676,439 - 50,705,427 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1850,341,318 - 50,367,481 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0850,364,432 - 50,390,390 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0850,763,323 - 50,789,283 (-)NCBIUU_Cfam_GSD_1.0
Alkbh1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864025,582,212 - 25,609,105 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364886,459,195 - 6,486,756 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ALKBH1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12454,932,455 - 54,967,394 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605343,121,434 - 43,154,011 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Alkbh1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473424,196,845 - 24,220,467 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473424,196,889 - 24,259,711 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ALKBH1
574 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000030365   ⟹   ENSSSCP00000024960
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl7100,676,632 - 100,710,401 (-)Ensembl
RefSeq Acc Id: XM_021099556   ⟹   XP_020955215
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.17100,676,778 - 100,710,414 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020955215   ⟸   XM_021099556
- UniProtKB: A0A4X1T4Q6 (UniProtKB/TrEMBL),   I3LLJ0 (UniProtKB/TrEMBL),   A0A8D0UYS4 (UniProtKB/TrEMBL),   A0A8D1DPE9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000024960   ⟸   ENSSSCT00000030365
Protein Domains
Fe2OG dioxygenase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000025906 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015035441 UniProtKB/TrEMBL
  ENSSSCG00025065682 UniProtKB/TrEMBL
  ENSSSCG00035028134 UniProtKB/TrEMBL
  ENSSSCG00040017821 UniProtKB/TrEMBL
  ENSSSCG00045034667 UniProtKB/TrEMBL
  ENSSSCG00055027475 UniProtKB/TrEMBL
  ENSSSCG00065073915 UniProtKB/TrEMBL
  ENSSSCG00070006262 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000030365 ENTREZGENE
  ENSSSCT00000030365.4 UniProtKB/TrEMBL
  ENSSSCT00015046942.1 UniProtKB/TrEMBL
  ENSSSCT00025090138.1 UniProtKB/TrEMBL
  ENSSSCT00035037221.1 UniProtKB/TrEMBL
  ENSSSCT00040024086.1 UniProtKB/TrEMBL
  ENSSSCT00045059377.1 UniProtKB/TrEMBL
  ENSSSCT00055054347.1 UniProtKB/TrEMBL
  ENSSSCT00065101777.1 UniProtKB/TrEMBL
  ENSSSCT00070011948.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.590 UniProtKB/TrEMBL
InterPro Alkb UniProtKB/TrEMBL
  AlkB-like UniProtKB/TrEMBL
  AlkB-like_sf UniProtKB/TrEMBL
  Oxoglu/Fe-dep_dioxygenase UniProtKB/TrEMBL
NCBI Gene ALKBH1 ENTREZGENE
PANTHER NUCLEIC ACID DIOXYGENASE ALKBH1 UniProtKB/TrEMBL
  PTHR16557 UniProtKB/TrEMBL
Pfam 2OG-FeII_Oxy_2 UniProtKB/TrEMBL
PROSITE FE2OG_OXY UniProtKB/TrEMBL
Superfamily-SCOP Clavaminate synthase-like UniProtKB/TrEMBL
UniProt A0A4X1T4Q6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0UYS4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0Z9V4_PIG UniProtKB/TrEMBL
  A0A8D1DPE9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1L7A3_PIG UniProtKB/TrEMBL
  I3LLJ0 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:85257 ENTREZGENE