Advanced Search (OLGA)

Gene: LOC102165602 (coiled-coil domain-containing protein 92) Sus scrofa

Subscribe to Updates

Analyze

Symbol:

LOC102165602

Name:

coiled-coil domain-containing protein 92

RGD ID:

14260521

Description:

ASSOCIATED WITH chromosome 15q11.2 deletion syndrome (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	12	48,773,571 - 48,800,393 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	50,541,301 - 50,566,615 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
LOC102165602	Pig	chromosome 15q11.2 deletion syndrome		ISO	CCDC92B (Homo sapiens)	8554872	ClinVar Annotator: match by term: Chromosome 15q11.2 deletion syndrome	ClinVar	PMID:25741868

LOC102165602
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	12	48,773,571 - 48,800,393 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	50,541,301 - 50,566,615 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCDC92B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	2,720,801 - 2,749,652 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	2,720,801 - 2,749,652 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	2,624,095 - 2,652,946 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Cytogenetic Map	17	p13.3	NCBI
HuRef	17	2,519,788 - 2,543,817 (-)	NCBI		HuRef
CHM1_1	17	2,633,738 - 2,660,561 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	2,610,006 - 2,638,853 (-)	NCBI		T2T-CHM13v2.0

Ccdc92b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	74,510,428 - 74,532,342 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	74,510,431 - 74,532,342 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	74,619,594 - 74,641,516 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	74,619,605 - 74,641,516 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	74,433,107 - 74,455,018 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	74,435,800 - 74,457,711 (+)	NCBI		MGSCv36	mm8
Celera	11	82,128,375 - 82,150,902 (+)	NCBI		Celera
Cytogenetic Map	11	B5	NCBI
cM Map	11	45.76	NCBI

Ccdc92b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	59,978,203 - 59,999,887 (+)	NCBI		GRCr8
mRatBN7.2	10	59,479,798 - 59,501,486 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	59,479,743 - 59,501,495 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	64,125,889 - 64,147,510 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	63,631,481 - 63,653,100 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	59,093,853 - 59,115,469 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	61,403,120 - 61,424,262 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	61,403,130 - 61,421,990 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	61,132,381 - 61,152,823 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	61,899,787 - 61,919,388 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	58,511,604 - 58,532,572 (+)	NCBI		Celera
Cytogenetic Map	10	q24	NCBI

CCDC92B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	10,301,326 - 10,330,177 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	12,267,739 - 12,296,666 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	2,711,407 - 2,740,361 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	2,715,954 - 2,729,659 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

CCDC92B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	46,766,991 - 46,799,043 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	45,919,694 - 45,937,618 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	47,602,143 - 47,620,057 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	9	46,369,317 - 46,387,215 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	46,663,079 - 46,681,416 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	46,715,997 - 46,734,089 (-)	NCBI		UU_Cfam_GSD_1.0

Ccdc92b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	45,850,860 - 45,871,289 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936538	8,728,805 - 8,749,231 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC92B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	2,332,418 - 2,360,278 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666059	19,571,317 - 19,612,422 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants in LOC102165602
923 total Variants

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_013990005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000081	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU469125	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU914236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_013990005 ⟹ XP_013845459

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	48,773,571 - 48,800,393 (-)	NCBI

Sequence:

show sequence

ATGGAGAGCAAAGGAATCCATAGGGAAAAGGCAGGTTCCGGTCACGTTGCTGGGTGTTTACGCCTGGAGCCCGCCCCGGACCCCCCCCCTCGGCGCCCGGGAGCCCCCCGGAGCCCCGGCCCGACGCC
CCGCAGCCTCGCAGTAGCTGATGGCGCCACAGCCTGGGCGGGCGCTGCGGAACCCCGGTCGCAGCTAGCGCGGGGAAGAAGAGAGCCTCCCGCTGCCCGGCCCGGCCCGGCCCCAGGGCCCCGTTCGC
CAGTCGCCCCCTCAGGTCCCGAAGGTTGGGCCCAGGCCGGGGTTGCCATGGATACTGTGTCCCTGGAGCATCAGATCCAGAGCGTGCAACGCCACATCAGCTTCCTGAAAAAAGAGCAGATGGCCCTG
CTGCGAGACCTGCACCTGGAAATCCTGAGGCTGCAGAAACGCTGTTCAGAACTGACCCATGACCTGGAGATAAGAGAGGCCCAATCTCACCAGCAAGAGTTGGCATCCCAGGAGCTGGAGAGCAAGTG
TCGTGCCCTGGAGTCGCAGCTGGCGGCGCGGGCGGCAGCCAACGCGGAACTGCGGCGCGAGGTGGCGCAGCGCGAGGCGCTGGTGTCCGCGTTGCGCTGCAGCCTGCGCGCCGAGGAGCGCCGCTTCC
TGGAGGAGCTGCGTCGCCGCAGTCACCGCGCCACCGTGCTGGGCACCGAGCTGCAGAAGCACACCGAGGCGGCCGCCTACCTCTCCTGCCAGCTGCACGCGGCGCGCCAGAAACTGCAGACTCCGCGC
CCGGGCCCCGGCGCTGCCGCCGCCGCGGAACCCCGGGTCCGCCGGCGCGCACAGCGAGCCCGACGCCCGCCTGCCACCGAGGCCGCTGCCAAGGGCCCGGGCCGGGACTGGGCCTCCTGGGAGCGTGC
GGCCGGCGCCCTGGACGACATCGACGCCATGCCAGACCCCGCGCTCTTCCTCTACGCCCGGAGACCCCCGCGGCCCAGCGGCCGCAGCCCGCGCCAGCCGCCTCCCCAGGAGCCCCCGGACCAAGCTG
GCCCGCTGGCCGCGCCTAGCCTGCCCAGGGCGCCCGCGGACCCGGAGTAGGCGTGGGGCCGGTGAAGCGGGAACCGGGGGAAGGCGGTCCCGGCCCCGGGCTAGGGACGCAGTTCGGGCCATACAGGC
GGGTCCCTAGGGCCGAGGGAGCCGGTCCCTACCCCCAGGGAGCGGACAAAGACGGCCCCTGCTCCCCAGCCCCTTCCAGCCGCCCCCGCCTTTTGTATCCCCTTACGTCGCCGAAGCTTCGAGCTTTC
CCCTCCACCAGGGAGGTCCTCCGCAGGGCCCAACGAATGCACCTTTTTTTCCTGGAGAGGTCTCATAGTACCGATCCTTATCTGGTCCCCACCCTGCCACTGGGAGGGGAAGGCGCGGGGGTCACGCC
CTGCCCCTGGAAAGCTGACAATCGTTTGTCGTTTGGCGGGAGGGGGAAGGCCTGGCTGGCATACGGAAAGGAAGCAGAGTGACCTGACCCTTAGCATCCTTAGGCCTTTCAGCTGCCCGCTGCGGCCT
CCCCCAGCCCCGCACGGCTACCCTTCCCGCCGAGCCTCCTCCGAGGCTCGAGCTAGGGGCTAGAGGCTGGACCTTTTCCTTGGAAGCCGCTTCTCCCCTACCCTGCTGACAGGTCCTTACAGGTGAGC
ACGAAACACTTTAGAAGACGCCTCCTCCAGAGCCTCTGGTGGGGAAAGTGGACAGATGAAAGTTTGAACTTCCCGAGGTTAGCACCCCTAGTCCCTTAGAGAGGATTACAGGAGGGGTTTGATGGCAG
ATGCTGGTCGAGGGCTGTCTCCAGCTCAGTTCTACCCTAGAACGCTGACCTAGGTGTTTAGACTCCAGGTGCAGCCAGAGATGAGCTGCCTGGTTAGGCTTATGGAGGTGTTAGAAACTGCCTTCAGG
AGGGAGCTGGGAACCTGAAAGCTGTCCTGGGGGTTTTCCTAGTCCTGTTTATTGGTGCTATTTTTGCCCAGCTTCCTAATGAGCTGGCTGCACCCAGAGGCAGGAAGAAGGGCCCAGCTTCTTGGAAG
CGGCAGCAATTGACAGAGGCTAGAGTTTGCTAGAGATTAGTTGTGAGGCACCACACGGTGGAAACACAGGTGAGGCTCCAGCCTGGCCTTTTCCAGGAATGCCCCCAATCCTATCAGACCCGACAGTG
ATGGGGTACTCAGTACCCTCTGTTTAGGTTGGGGAGTGACAAACTGGAAATACTGCCCCACCGCCTAATGTGTTTCCCCCTCACCCCCCGCCCCCAACTAAAAGCAGGAAGTGCAGCTCCAGTCTGGC
TCATTGCTCCCACCCTAGTCCAGCCTAGAAAGACAAACCCCTGGGACCCTGTCCTCTCATGCCATCCTCCTCTGTTGGTCTTGCATCAAGTCCTAAGTGCCTGTGAGGTCTTCCAGGGGCTGCTGAGG
GAGGACATGGGGCAGGGAGAGGCCTTTGCCTCACTCCCAAGCATCCCGTCCTGGCAGGTCCTGACCTGGCTGGGGCCAAGCCTTCAGTTTGTCACCCAGGAATCCGGGAGGTTTCTAGGGGTAATAAA
CCCTTTCCCCATCGTGGCTCCATGAAGAAGTGGCGGGGAAAGGTCCCCAGTTATACCCTCTTTCACTGTATATATTGGAGCAGGAAACCAGTGAGCCTACTCCCACCCCCAACAGACATGCAGGCCTG
GGAGTTCCCTTGTAGTGCAGCAGGTGAAGGATCCAGCACTGGCACTGCAGCCCCCCCGCCCTCCGGTTGAATTCCTGGCGGGGGGAACTTCCACAGGTTGTGGGTGTGGCCGAAAACAAACAAACAAA
AACATGCGGGGTCCCTCCCAGCTCAGGACTGCTGAGATCTCGGAGAAATACCAGGCCTGGTTTAGGTGTCCGCCACTGGGGCACCTTTGGTTTTGTTCTTTTTTTTTTTTTTTCCCTGTCTTTTTTTT
TTTTTGGTCTTTTTGCCATTTCTAGGGCCGCTTCACAGCATATGGAGGTTCCCAGGCTAAGGGTCGAATCGGAGCTGTAGCCTCTGGCCTACACCAGAGCCACAGCAACGCAGGATCCGAGCCGCGTC
TGCAACCTACACCACAGTTCACGGCAACGCCGGATCCTTAACCCACTAAGCAAGGCCAGGGATCGAACCCGCAACCTTATGGTTCGTAGTCGGATTCATTAAGCCCTGAGCCACGACGGGAACTCCTC
CCCCTGTCTTTTTAGGCCTGGGCCAGTGACATATGGAAGTTCCCAGGCTAGGGGTTGAATTGGAGCTGCAGCTGCCAGCGTACACCACAGCCGCAACAGCAGATCTGAGCTGCCTCCAAGACCTATGC
TACAGCCTGTGGTAACACCAGATTCCCAATCCACTGAGTGAGGCCAGGGATTGAACCCACATCCTCATGGATACTCGTAGGGTTTTTAACCCGCTGAGCCACAACGGGAACTCCTGGGGCACCCCAGG
GACAGACAGTGCTGCCGGTCTAACTTGGGCCCCAGCAATGGCCTAGGGTCCTTGCTCTGCCTGCTCCCACCTCTTACACGCACACCCCCAGTCTCTGTGGATGTGCCTCTGCCCTCTGACTCCCCACT
GTACCCCTCCACCTGTTGCTCCCCTTTTCAGAATGTGTCTGAGTGAGGAGGCC

hide sequence


Protein RefSeqs	XP_013845459	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_013845459 ⟸ XM_013990005

- Sequence:

show sequence

MESKGIHREKAGSGHVAGCLRLEPAPDPPPRRPGAPRSPGPTPRSLAVADGATAWAGAAEPRSQLARGRREPPAARPGPAPGPRSPVAPSGPEGWAQAGVAMDTVSLEHQIQSVQRHISFLKKEQMAL
LRDLHLEILRLQKRCSELTHDLEIREAQSHQQELASQELESKCRALESQLAARAAANAELRREVAQREALVSALRCSLRAEERRFLEELRRRSHRATVLGTELQKHTEAAAYLSCQLHAARQKLQTPR
PGPGAAAAAEPRVRRRAQRARRPPATEAAAKGPGRDWASWERAAGALDDIDAMPDPALFLYARRPPRPSGRSPRQPPPQEPPDQAGPLAAPSLPRAPADPE

hide sequence

Database	Acc Id	Source(s)
NCBI Gene	LOC102165602	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Send us a Message

Imported Disease Annotations - ClinVar