FAAP24 (FA core complex associated protein 24) - Rat Genome Database

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Gene: FAAP24 (FA core complex associated protein 24) Sus scrofa
Analyze
Symbol: FAAP24
Name: FA core complex associated protein 24
RGD ID: 14259802
Description: ENCODES a protein that exhibits chromatin binding (inferred); INVOLVED IN DNA repair (inferred); interstrand cross-link repair (inferred); ASSOCIATED WITH hereditary spastic paraplegia 75 (ortholog); FOUND IN chromatin (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C6H19orf40; Fanconi anemia core complex associated protein 24; Fanconi anemia core complex-associated protein 24
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl642,815,528 - 42,819,623 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1642,815,475 - 42,819,116 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2638,322,957 - 38,326,593 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:30032202  


Genomics

Comparative Map Data
FAAP24
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl642,815,528 - 42,819,623 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1642,815,475 - 42,819,116 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2638,322,957 - 38,326,593 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAAP24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381932,972,242 - 32,978,229 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1932,972,209 - 32,978,229 (+)EnsemblGRCh38hg38GRCh38
GRCh371933,463,148 - 33,469,135 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361938,155,018 - 38,159,814 (+)NCBINCBI36Build 36hg18NCBI36
Celera1930,156,740 - 30,161,565 (+)NCBICelera
Cytogenetic Map19q13.11NCBI
HuRef1929,965,849 - 29,970,674 (+)NCBIHuRef
CHM1_11933,464,253 - 33,469,078 (+)NCBICHM1_1
T2T-CHM13v2.01935,490,917 - 35,496,903 (+)NCBIT2T-CHM13v2.0
Faap24
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39735,091,577 - 35,096,192 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl735,091,577 - 35,096,261 (-)EnsemblGRCm39 Ensembl
GRCm38735,392,152 - 35,396,767 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl735,392,152 - 35,396,836 (-)EnsemblGRCm38mm10GRCm38
MGSCv37736,177,171 - 36,181,786 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36735,100,912 - 35,105,527 (-)NCBIMGSCv36mm8
Celera730,530,652 - 30,535,264 (-)NCBICelera
Cytogenetic Map7B2NCBI
cM Map721.37NCBI
Faap24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8197,188,678 - 97,194,899 (-)NCBIGRCr8
mRatBN7.2188,051,523 - 88,057,997 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl188,051,911 - 88,057,989 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx193,457,341 - 93,463,505 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01101,923,315 - 101,929,479 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0195,215,631 - 95,221,795 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0191,657,263 - 91,663,485 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl191,657,263 - 91,663,467 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0192,784,851 - 92,791,072 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4187,917,502 - 87,923,706 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera182,401,482 - 82,407,672 (-)NCBICelera
Cytogenetic Map1q21NCBI
Faap24
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554684,977,030 - 4,980,951 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554684,977,024 - 4,980,543 (-)NCBIChiLan1.0ChiLan1.0
FAAP24
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22038,945,608 - 38,950,914 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11940,944,834 - 40,950,068 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01929,895,258 - 29,900,531 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11938,639,129 - 38,644,143 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1938,639,167 - 38,644,143 (+)Ensemblpanpan1.1panPan2
FAAP24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11119,119,920 - 119,124,964 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1119,120,463 - 119,124,038 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1118,520,158 - 118,525,200 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01119,718,542 - 119,723,594 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1119,715,282 - 119,722,428 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11119,283,959 - 119,287,936 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01118,904,293 - 118,909,333 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01119,964,478 - 119,969,552 (-)NCBIUU_Cfam_GSD_1.0
Faap24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093498,809,147 - 8,811,892 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365702,834,059 - 2,834,436 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAAP24
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1628,012,664 - 28,018,612 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl628,012,808 - 28,019,627 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660735,598,285 - 5,602,925 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Faap24
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247947,862,139 - 7,868,373 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247947,862,653 - 7,866,065 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FAAP24
66 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 3 22 3 2 5 12 10 22 3 5 3

Sequence


Ensembl Acc Id: ENSSSCT00000028553   ⟹   ENSSSCP00000023493
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl642,815,528 - 42,819,623 (+)Ensembl
RefSeq Acc Id: XM_003355843   ⟹   XP_003355891
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1642,815,475 - 42,819,116 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003355844   ⟹   XP_003355892
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1642,815,553 - 42,819,116 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003355891   ⟸   XM_003355843
- UniProtKB: I3LHE7 (UniProtKB/TrEMBL),   A0A4X1TS87 (UniProtKB/TrEMBL),   A0A480X3P8 (UniProtKB/TrEMBL),   A0A8D0JXZ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003355892   ⟸   XM_003355844
- UniProtKB: I3LHE7 (UniProtKB/TrEMBL),   A0A4X1TS87 (UniProtKB/TrEMBL),   A0A480X3P8 (UniProtKB/TrEMBL),   A0A8D0JXZ7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000023493   ⟸   ENSSSCT00000028553
Protein Domains
DisA/LigA helix-hairpin-helix motif   Fanconi anemia core complex-associated protein


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000040905 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005030828 UniProtKB/TrEMBL
  ENSSSCG00015078495 UniProtKB/TrEMBL
  ENSSSCG00025041021 UniProtKB/TrEMBL
  ENSSSCG00030006021 UniProtKB/TrEMBL
  ENSSSCG00035080197 UniProtKB/TrEMBL
  ENSSSCG00040059390 UniProtKB/TrEMBL
  ENSSSCG00045039480 UniProtKB/TrEMBL
  ENSSSCG00050075328 UniProtKB/TrEMBL
  ENSSSCG00055021818 UniProtKB/TrEMBL
  ENSSSCG00065057037 UniProtKB/TrEMBL
  ENSSSCG00070011273 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000028553 ENTREZGENE
  ENSSSCT00000028553.4 UniProtKB/TrEMBL
  ENSSSCT00005049159.1 UniProtKB/TrEMBL
  ENSSSCT00015106256.1 UniProtKB/TrEMBL
  ENSSSCT00015106294.1 UniProtKB/TrEMBL
  ENSSSCT00025055749.1 UniProtKB/TrEMBL
  ENSSSCT00030008156.1 UniProtKB/TrEMBL
  ENSSSCT00035109806.1 UniProtKB/TrEMBL
  ENSSSCT00040080767.1 UniProtKB/TrEMBL
  ENSSSCT00045068784.1 UniProtKB/TrEMBL
  ENSSSCT00050103256.1 UniProtKB/TrEMBL
  ENSSSCT00050103259.1 UniProtKB/TrEMBL
  ENSSSCT00055042914.1 UniProtKB/TrEMBL
  ENSSSCT00065078100.1 UniProtKB/TrEMBL
  ENSSSCT00070021949.1 UniProtKB/TrEMBL
  ENSSSCT00070021955.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.10130 UniProtKB/TrEMBL
  5' to 3' exonuclease, C-terminal subdomain UniProtKB/TrEMBL
InterPro DisA/LigA_HHH UniProtKB/TrEMBL
  FAAP24 UniProtKB/TrEMBL
  PND UniProtKB/TrEMBL
  RuvA_2-like UniProtKB/TrEMBL
KEGG Report ssc:100621643 UniProtKB/TrEMBL
NCBI Gene FAAP24 ENTREZGENE
PANTHER FANCONI ANEMIA CORE COMPLEX-ASSOCIATED PROTEIN 24 UniProtKB/TrEMBL
  PTHR31786 UniProtKB/TrEMBL
Pfam HHH_2 UniProtKB/TrEMBL
  PND UniProtKB/TrEMBL
Superfamily-SCOP SSF47781 UniProtKB/TrEMBL
UniProt A0A480X3P8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TPP5_PIG UniProtKB/TrEMBL
  A0A4X1TS87 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0JXZ7 ENTREZGENE, UniProtKB/TrEMBL
  I3LHE7 ENTREZGENE
UniProt Secondary I3LHE7 UniProtKB/TrEMBL
VGNC ID VGNC:87870 ENTREZGENE