CPXM2 (carboxypeptidase X, M14 family member 2) - Rat Genome Database

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Gene: CPXM2 (carboxypeptidase X, M14 family member 2) Sus scrofa
Analyze
Symbol: CPXM2
Name: carboxypeptidase X, M14 family member 2
RGD ID: 14231525
Description: ENCODES a protein that exhibits carboxypeptidase activity (ortholog); INVOLVED IN proteolysis (ortholog); ASSOCIATED WITH breast ductal carcinoma (ortholog); genetic disease (ortholog); invasive ductal carcinoma (ortholog); FOUND IN extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: inactive carboxypeptidase-like protein X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14133,246,526 - 133,376,489 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114133,246,521 - 133,376,378 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214144,880,552 - 145,027,128 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
CPXM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14133,246,526 - 133,376,489 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114133,246,521 - 133,376,378 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214144,880,552 - 145,027,128 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CPXM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810123,745,639 - 123,944,104 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10123,706,207 - 123,940,267 (-)EnsemblGRCh38hg38GRCh38
GRCh3710125,505,155 - 125,651,323 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610125,495,142 - 125,641,490 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410125,495,141 - 125,641,490NCBI
Celera10119,210,810 - 119,357,101 (-)NCBICelera
Cytogenetic Map10q26.13NCBI
HuRef10119,120,570 - 119,266,868 (-)NCBIHuRef
CHM1_110125,787,211 - 125,933,512 (-)NCBICHM1_1
T2T-CHM13v2.010124,622,492 - 124,821,277 (-)NCBIT2T-CHM13v2.0
Cpxm2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397131,634,416 - 131,756,483 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7131,634,416 - 131,756,468 (-)EnsemblGRCm39 Ensembl
GRCm387132,032,687 - 132,154,765 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7132,032,687 - 132,154,739 (-)EnsemblGRCm38mm10GRCm38
MGSCv377139,234,493 - 139,346,424 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367131,881,159 - 131,993,082 (-)NCBIMGSCv36mm8
Celera7131,849,272 - 131,959,301 (-)NCBICelera
Cytogenetic Map7F3NCBI
cM Map775.6NCBI
Cpxm2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81196,266,930 - 196,377,350 (-)NCBIGRCr8
mRatBN7.21186,836,797 - 186,947,222 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1186,836,797 - 186,947,220 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1195,186,954 - 195,297,381 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01202,365,897 - 202,476,322 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01195,039,012 - 195,149,430 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01204,048,785 - 204,161,090 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1204,048,785 - 204,087,001 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01211,049,000 - 211,158,115 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41191,510,790 - 191,624,219 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11191,661,676 - 191,773,964 (-)NCBI
Celera1184,585,401 - 184,694,851 (-)NCBICelera
Cytogenetic Map1q41NCBI
Cpxm2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554771,840,606 - 1,975,531 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554771,840,642 - 1,975,531 (-)NCBIChiLan1.0ChiLan1.0
CPXM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28135,588,322 - 135,735,921 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110135,593,728 - 135,741,271 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010120,302,984 - 120,449,022 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110124,576,161 - 124,721,359 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10124,576,161 - 124,721,359 (-)Ensemblpanpan1.1panPan2
CPXM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12833,219,823 - 33,380,852 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2833,220,890 - 33,467,746 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2833,284,486 - 33,412,252 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02833,776,621 - 33,904,851 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2833,776,640 - 34,059,105 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12833,333,240 - 33,461,276 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02833,325,593 - 33,454,253 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02833,575,878 - 33,705,412 (-)NCBIUU_Cfam_GSD_1.0
Cpxm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721313,225,717 - 13,311,170 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648612,251,199 - 12,345,542 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648612,250,128 - 12,335,578 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPXM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19116,410,136 - 116,555,770 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9116,410,128 - 116,555,511 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604877,723,484 - 77,869,318 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cpxm2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473723,156,028 - 23,299,522 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473723,156,008 - 23,299,312 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CPXM2
7075 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 1 1 2
Low 8 3 1 4 2 19 2 3 1
Below cutoff 2 2

Sequence


RefSeq Acc Id: ENSSSCT00000011739   ⟹   ENSSSCP00000011437
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14133,246,526 - 133,376,489 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000050341   ⟹   ENSSSCP00000038775
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14133,246,526 - 133,376,603 (-)Ensembl
RefSeq Acc Id: XM_013983826   ⟹   XP_013839280
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114133,246,903 - 133,376,375 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013983827   ⟹   XP_013839281
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114133,246,903 - 133,370,756 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021073605   ⟹   XP_020929264
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114133,246,521 - 133,376,378 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021073606   ⟹   XP_020929265
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114133,246,903 - 133,376,376 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020929264   ⟸   XM_021073605
- Peptide Label: isoform X2
- UniProtKB: A0A8D1GML0 (UniProtKB/TrEMBL),   F1SEC6 (UniProtKB/TrEMBL),   A0A8D1FKS2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020929265   ⟸   XM_021073606
- Peptide Label: isoform X3
- UniProtKB: A0A8D2CGE0 (UniProtKB/TrEMBL),   A0A8D1FKS2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013839280   ⟸   XM_013983826
- Peptide Label: isoform X1
- UniProtKB: A0A8D1GML0 (UniProtKB/TrEMBL),   F1SEC6 (UniProtKB/TrEMBL),   A0A8D1FKS2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013839281   ⟸   XM_013983827
- Peptide Label: isoform X4
- UniProtKB: A0A8D0NE71 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000038775   ⟸   ENSSSCT00000050341
RefSeq Acc Id: ENSSSCP00000011437   ⟸   ENSSSCT00000011739

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000010728 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015030662 UniProtKB/TrEMBL
  ENSSSCG00025019405 UniProtKB/TrEMBL
  ENSSSCG00035075220 UniProtKB/TrEMBL
  ENSSSCG00040064830 UniProtKB/TrEMBL
  ENSSSCG00045002861 UniProtKB/TrEMBL
  ENSSSCG00055022785 UniProtKB/TrEMBL
  ENSSSCG00065070458 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000011739 ENTREZGENE
  ENSSSCT00000011739.5 UniProtKB/TrEMBL
  ENSSSCT00015042563.1 UniProtKB/TrEMBL
  ENSSSCT00015042939.1 UniProtKB/TrEMBL
  ENSSSCT00015043270.1 UniProtKB/TrEMBL
  ENSSSCT00015043388.1 UniProtKB/TrEMBL
  ENSSSCT00015044825.1 UniProtKB/TrEMBL
  ENSSSCT00025026313.1 UniProtKB/TrEMBL
  ENSSSCT00025026343.1 UniProtKB/TrEMBL
  ENSSSCT00035102213.1 UniProtKB/TrEMBL
  ENSSSCT00040088669.1 UniProtKB/TrEMBL
  ENSSSCT00045004536.1 UniProtKB/TrEMBL
  ENSSSCT00055044801.1 UniProtKB/TrEMBL
  ENSSSCT00055044967.1 UniProtKB/TrEMBL
  ENSSSCT00055045105.1 UniProtKB/TrEMBL
  ENSSSCT00065096778.1 UniProtKB/TrEMBL
  ENSSSCT00065096792.1 UniProtKB/TrEMBL
Gene3D-CATH Carboxypeptidase-like, regulatory domain UniProtKB/TrEMBL
  Galactose-binding domain-like UniProtKB/TrEMBL
  Zn peptidases UniProtKB/TrEMBL
InterPro CarboxyPept-like_regulatory UniProtKB/TrEMBL
  FA58C UniProtKB/TrEMBL
  Galactose-bd-like_sf UniProtKB/TrEMBL
  Peptidase_M14 UniProtKB/TrEMBL
NCBI Gene CPXM2 ENTREZGENE
PANTHER INACTIVE CARBOXYPEPTIDASE-LIKE PROTEIN X2 UniProtKB/TrEMBL
  PROTEASE M14 CARBOXYPEPTIDASE UniProtKB/TrEMBL
Pfam CarboxypepD_reg UniProtKB/TrEMBL
  F5_F8_type_C UniProtKB/TrEMBL
  Peptidase_M14 UniProtKB/TrEMBL
PRINTS CRBOXYPTASEA UniProtKB/TrEMBL
PROSITE CARBOXYPEPT_ZN_1 UniProtKB/TrEMBL
  FA58C_1 UniProtKB/TrEMBL
  FA58C_2 UniProtKB/TrEMBL
  FA58C_3 UniProtKB/TrEMBL
SMART FA58C UniProtKB/TrEMBL
  Zn_pept UniProtKB/TrEMBL
Superfamily-SCOP SSF49464 UniProtKB/TrEMBL
  SSF49785 UniProtKB/TrEMBL
  Zn-dependent exopeptidases UniProtKB/TrEMBL
UniProt A0A8D0NE71 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0NHI7_PIG UniProtKB/TrEMBL
  A0A8D0NIX6_PIG UniProtKB/TrEMBL
  A0A8D0NKI8_PIG UniProtKB/TrEMBL
  A0A8D0U193_PIG UniProtKB/TrEMBL
  A0A8D1FKS2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1GML0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1RH67_PIG UniProtKB/TrEMBL
  A0A8D2CGE0 ENTREZGENE, UniProtKB/TrEMBL
  F1SEC6 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:86969 ENTREZGENE