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Gene: ARMC1 (armadillo repeat containing 1) Sus scrofa

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Symbol:

ARMC1

Name:

armadillo repeat containing 1

RGD ID:

14199248

Description:

ENCODES a protein that exhibits metal ion binding (inferred); INVOLVED IN intracellular distribution of mitochondria (inferred); FOUND IN cytoplasm (inferred); cytosol (inferred); mitochondrial outer membrane (inferred); INTERACTS WITH deoxynivalenol

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

armadillo repeat-containing protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	68,983,069 - 69,016,081 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	68,983,043 - 69,015,746 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	75,141,923 - 75,174,624 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

deoxynivalenol (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intracellular distribution of mitochondria (IEA)

Cellular Component

cytoplasm (IEA)

cytosol (IEA)

mitochondrial outer membrane (IEA)

mitochondrion (IEA)

Molecular Function

metal ion binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:14681463	PMID:17145712	PMID:22301074

Genomics

Comparative Map Data

ARMC1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	68,983,069 - 69,016,081 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	68,983,043 - 69,015,746 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	75,141,923 - 75,174,624 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ARMC1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	65,602,458 - 65,634,177 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	65,602,458 - 65,634,217 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	66,514,693 - 66,546,412 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	66,677,618 - 66,708,986 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	8	66,677,628 - 66,708,986	NCBI
Celera	8	62,506,147 - 62,537,940 (-)	NCBI		Celera
Cytogenetic Map	8	q13.1	NCBI
HuRef	8	62,004,697 - 62,036,506 (-)	NCBI		HuRef
CHM1_1	8	66,569,338 - 66,601,089 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	66,028,123 - 66,059,853 (-)	NCBI		T2T-CHM13v2.0

Armc1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	19,185,566 - 19,219,225 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	19,185,566 - 19,217,229 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	19,131,402 - 19,163,095 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	19,131,402 - 19,163,065 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	19,032,144 - 19,063,065 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	18,865,118 - 18,896,039 (-)	NCBI		MGSCv36	mm8
MGSCv36	3	19,324,295 - 19,355,216 (-)	NCBI		MGSCv36	mm8
Celera	3	19,122,907 - 19,153,504 (-)	NCBI		Celera
Cytogenetic Map	3	A2	NCBI
cM Map	3	5.36	NCBI

Armc1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	103,524,333 - 103,568,355 (-)	NCBI		GRCr8
mRatBN7.2	2	101,608,171 - 101,652,198 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	101,608,288 - 101,652,171 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	108,125,173 - 108,169,279 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	106,246,295 - 106,290,403 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	101,221,405 - 101,265,416 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	103,926,567 - 103,979,607 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	103,928,264 - 103,979,586 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	123,679,081 - 123,701,646 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	2	123,653,834 - 123,656,205 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	104,228,985 - 104,273,611 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	2	97,002,973 - 97,046,225 (-)	NCBI		Celera
Cytogenetic Map	2	q24	NCBI

Armc1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955444	13,537,904 - 13,571,129 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955444	13,537,904 - 13,570,718 (+)	NCBI	ChiLan1.0	ChiLan1.0

ARMC1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	81,336,955 - 81,370,375 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	56,970,871 - 57,009,734 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	62,142,817 - 62,174,537 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	63,811,852 - 63,844,059 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	63,811,852 - 63,844,059 (-)	Ensembl	panpan1.1		panPan2

ARMC1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	29	15,277,246 - 15,314,781 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	29	15,277,020 - 15,314,695 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	29	15,598,032 - 15,636,610 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	29	15,361,329 - 15,399,741 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	29	15,361,334 - 15,399,718 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	29	15,378,434 - 15,417,172 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	29	15,493,774 - 15,532,318 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	29	15,754,999 - 15,793,393 (-)	NCBI		UU_Cfam_GSD_1.0

Armc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	66,524,601 - 66,551,370 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936496	8,234,063 - 8,260,965 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936496	8,234,110 - 8,260,863 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARMC1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	61,464,410 - 61,496,392 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	61,462,435 - 61,496,374 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666039	80,023,915 - 80,055,955 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Armc1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624744	25,885,446 - 25,918,888 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624744	25,885,439 - 25,918,205 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in ARMC1
685 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	4	23	3	2	5	14	12	23	3	6	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001190196	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK239025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK348681	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU207226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01080387	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000006816 ⟹ ENSSSCP00000006631

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	4	68,983,069 - 69,016,081 (+)	Ensembl

RefSeq Acc Id:

NM_001190196 ⟹ NP_001177125

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	68,983,043 - 69,015,746 (+)	NCBI

Sequence:

show sequence

GAGAGTCCGTAGAGCCTTTCCCCGCCAGCGCCCTCGCTCTTTGGCTCCTGGAGTCGGTGTGGTA
GTCTTCCCACGCTGAGGCCGTCTTGGAAGGAGGGAGCTGCTCTGTGCCTCCCGGATACCTCTAC
CTCATCCGCTGGTGTGTCCCTGATGGTGAGGCAGGCTCTGGATTCTTAGAACCCTGAAGCGAAT
TTAAGAAGATTTTGTTCATGTGTCTGGCATAGAAGATGAATTCTTCCTCCTCCACCATGAACGA
AGAACCCGATGCTCTCTCCGTGGTTAACCAGCTCCGGGATTTAGCAGCAGACCCATTAAATCGA
AGAGCCATTGTCCAGGATCAGGGATGTCTGCCTGGCCTTATTTTATTTATGGACCATCCCAACC
CCCCTGTTGTTCACTCAGCTTTGCTTGCTCTTCGATACTTGGCAGAGTGCCGTGCTAACAGAGA
AAAGATGAAAGGAGAACTGGGTATGATGTTAAGCTTGCAAAATGTTATACAAAAGACTACAACT
CCAGGAGAAACAAAACTGCTGGCCTCTGAAATCTATGACATTCTTCAATCTTCTAATATGGCAG
ATGGTGATAGTTTCAATGAAATGAATTCACGTCGAAGGAAAGCTCAGTTTTTTCTGGGAACCAC
AAACAAACGTGCCAAAACAGTGGTTTTGCATATAGATGGTCTTGATGATACGTCTCGGAGAAAT
CTATGTGAAGAGGCTTTGTTAAAAATTAAAGGTGTTATTAGCTTTACTTTTCAAATGGCCGTTC
AGAGATGTGTGGTGAGAATCCGTTCAGATCTGAAAGCAGAGGCTTTGGCATCAGCAATAGCATC
AACCAAGGTTATGAAGGCTCAGCAAGTTGTGAAAAGTGAAAGTGGAGAAGAGATGCTGGTCCCA
TTCCAAGACACACCTGTGGAAGTAGAACAGAATACAGAGCTGCCCGACTACCTGCCTGAGGATG
AGAGTCCCACAAAGGAGCAGGACAAAGCAGTGTCCCGGGTGGGCTCCCACCCAGAAGGGGGGGC
CAACTGGCTGAGCACAGCTGCAAACTTTTTATCCAGATCGTTTTACTGGTGACTTCACTTTGGG
GCTCAAGGACTGTGTGAACGAACAAGGGGCCAGTTTTCCATTGTTGTGGTGAACTGTCAAGTGC
AATTTGCAATAAGTTATCATGAAAAGTTTCTAGATTACAAGATTGAGTATGCTGCATCTTACAT
TTTATTGGACATTTTACCCCACTAAGTGGTAAAAAGGACAGAGGCTACAGGTAGAGTTACTTTG
TTTATGAAGGTATTTTGGTTTTGTTTTCCTTTAATTGCTTCACTTAAAAAAAAAAAAAAAATGG
GTCCACTGTTATACCAAACATATATATATATGTGCAGCTTTACATTTTGTTTTACATGAAGCAC
GTGATTAGGAAAACTCGTTTTCTCAAGCCTCAGGGCCTATCTGAAGAGAAGTTCCTTTTTTTTT
TTTTTTAAGCTCAAGTTGTGCATGAATTACTGAACTTTTTCTCTGCTTTTTTTTGTAAAACATA
CTTTGGTACTCTTCACTGAAAGTTGAAAACATTTCTCATTAATCCCCTTTTGTGCCTTTTTTTA
ATTTTGCCAACCATGTTTATAGACAGGACATTACTAATGACATTTTGTGAATTAAAACATATTC
ATTGGAATGTGACAGTCCCCTAAAAATCCAACTCTACAGAAACTTTGCTGTCTTATTTGTTGTA
ATTTTAATAATAGGAACACAAAGTCAAGAAGGAAACATGTATATCTGCAAAGGGTCATGGAGAC
TGTTGGAATGTGACCAAGTGTGGGTCTAGTGGGCTACTGCTCGTCTTGGTTCATAATAGCTCTT
GAGACCTGACACTGGGAGTGACCAGAAGTGGTCTGTAGGCCTTATTTGTGATTACACACTGTCC
CCTGCTAGGAAAAAAATTAGTAAAGAACTGAGAAACTTGAAGAAAAAAAACAAAAATGGAATGC
CTATAATGCCATAGTGCTATTTGGTAGAGTCTAACCTTAAAAACATGAGTTGCTTGGCAGATGC
CTTTTCGGTAGGTGTTTCCTTGTTTGCCTTCTGTGAACATGCAGTCATACGGAATGGAAAGAAA
AAAAAGACTCAAATTACTGCTTATAAAGAAATAAAGCCAGCATTTGTCCACTTCATCTTGTTTG
TCACATTCAGCCAGAAAAAAAGCAAGACTTCAGTGAAGGTAAGATAAATAAATACAAATATATA
TACATATATATTTTTAGTAGATAAGAGCTAATGACATATATGTAATGCTTTATTGAATTTTTGA
AGTATTGGGCCATTAAAATTTTCCTTTTGGAAATCCAGCTAAATCCAGATGAATTTTTAATGCT
AATACGATTAAAAACTAATGGGAAGAAATGGAATAATTTTTTCATCAACATGTAGAGCTGCTAT
TTTACTACTTGGAGAATGTGAAGTGAAAATTGGACCCCAGAGGGTTTCCTTGCATTTTCATCGG
TTCTCTGTTAGAGAAAACTAAAATCATCCAGTGTCGCTGGAGAAAAATTATTGTAAAATACTTC
ATCATCAAGAACCTTGAGTTCAAAACATTGTGACCTTATGGAGGGAGGGGTGAAGGTATTGAGA
GTGATATTTTTTCCATCTGGGCTCTGGTTCAGGTGACACGCACAACAGAAAATAGAAGCTTTCA
GGGCATGTATTGCTTTAAATGCATAATACAGTTTGCTGCCAGACCAGATGTGTTGGAAAACAAA
AACAAAACCACCTCCTTTCTTATAGCCATTGAAACAAAGTTTACGTTGTGTTTTAACAAGTTTG
TATTTTAGTTTGCATTGCCACACATCTGCTTATTTAAAAAATGACGTCCCTTTGGTAGTAATGG
TTCAGCACAAGTAGGTGTCACAGCTTGATGTTTGTGTGTTTTAATTCTCAGTGTTCTTTGATTC
CAGGTCTTATAGAGCAGTTAAGGCAACTGTAATGGCATTTTTTGAAATATATTGTAAAATAATA
AAAGGTAACATAATTAAAATT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001177125	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000006631
	ENSSSCP00000006631.3

RefSeq Acc Id:

NP_001177125 ⟸ NM_001190196

- Sequence:

show sequence

MNSSSSTMNEEPDALSVVNQLRDLAADPLNRRAIVQDQGCLPGLILFMDHPNPPVVHSALLALR
YLAECRANREKMKGELGMMLSLQNVIQKTTTPGETKLLASEIYDILQSSNMADGDSFNEMNSRR
RKAQFFLGTTNKRAKTVVLHIDGLDDTSRRNLCEEALLKIKGVISFTFQMAVQRCVVRIRSDLK
AEALASAIASTKVMKAQQVVKSESGEEMLVPFQDTPVEVEQNTELPDYLPEDESPTKEQDKAVS
RVGSHPEGGANWLSTAANFLSRSFYW

hide sequence

Ensembl Acc Id:

ENSSSCP00000006631 ⟸ ENSSSCT00000006816

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000006220	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000006816	ENTREZGENE
	ENSSSCT00000006816.5	UniProtKB/TrEMBL
Gene3D-CATH	1.25.10.10	UniProtKB/TrEMBL
InterPro	ARM-like	UniProtKB/TrEMBL
	ARM-type_fold	UniProtKB/TrEMBL
	Armadillo	UniProtKB/TrEMBL
	HMA_dom_sf	UniProtKB/TrEMBL
	UCP013899_metal-bd	UniProtKB/TrEMBL
NCBI Gene	ARMC1	ENTREZGENE
PANTHER	ARMADILLO REPEAT-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
	ARMADILLO REPEAT-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
Pfam	Arm	UniProtKB/TrEMBL
PIRSF	UCP013899	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48371	UniProtKB/TrEMBL
	SSF55008	UniProtKB/TrEMBL
UniProt	F1RTB0_PIG	UniProtKB/TrEMBL
UniProt Secondary	A0A4X1UWI7	UniProtKB/TrEMBL
VGNC ID	VGNC:85526	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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