ZSCAN2 (zinc finger and SCAN domain containing 2) - Rat Genome Database

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Gene: ZSCAN2 (zinc finger and SCAN domain containing 2) Sus scrofa
Analyze
Symbol: ZSCAN2
Name: zinc finger and SCAN domain containing 2
RGD ID: 14176528
Description: ENCODES a protein that exhibits DNA binding (inferred); metal ion binding (inferred); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); prostate cancer (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger and SCAN domain-containing protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl752,910,849 - 52,957,983 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1752,910,839 - 52,958,007 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
ZSCAN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl752,910,849 - 52,957,983 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1752,910,839 - 52,958,007 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZSCAN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381584,601,009 - 84,623,716 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1584,600,986 - 84,627,796 (+)EnsemblGRCh38hg38GRCh38
GRCh371585,144,240 - 85,166,947 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361582,945,253 - 82,967,951 (+)NCBINCBI36Build 36hg18NCBI36
Celera1561,569,776 - 61,592,474 (+)NCBICelera
Cytogenetic Map15q25.2NCBI
HuRef1561,230,162 - 61,252,841 (+)NCBIHuRef
CHM1_11584,985,362 - 85,008,059 (+)NCBICHM1_1
T2T-CHM13v2.01582,353,436 - 82,376,136 (+)NCBIT2T-CHM13v2.0
Zscan2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39780,510,485 - 80,539,740 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl780,510,668 - 80,526,285 (+)EnsemblGRCm39 Ensembl
GRCm38780,860,737 - 80,878,675 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl780,860,920 - 80,876,537 (+)EnsemblGRCm38mm10GRCm38
MGSCv37788,006,994 - 88,021,400 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36780,735,621 - 80,750,027 (+)NCBIMGSCv36mm8
Celera778,270,496 - 78,284,812 (+)NCBICelera
Cytogenetic Map7D3NCBI
cM Map745.71NCBI
Zscan2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81144,243,082 - 144,258,192 (+)NCBIGRCr8
mRatBN7.21134,833,701 - 134,848,957 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1134,833,871 - 134,848,952 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01142,679,308 - 142,695,232 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1142,679,345 - 142,695,475 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01143,630,849 - 143,646,301 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1126,887,996 - 126,902,196 (+)NCBICelera
Cytogenetic Map1q31NCBI
Zscan2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541614,498,183 - 14,514,178 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541614,498,737 - 14,514,178 (-)NCBIChiLan1.0ChiLan1.0
ZSCAN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21673,556,526 - 73,580,350 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11577,776,719 - 77,796,507 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01563,268,141 - 63,291,499 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11582,592,542 - 82,614,592 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1582,595,450 - 82,614,776 (+)Ensemblpanpan1.1panPan2
ZSCAN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1353,864,823 - 53,905,236 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl353,866,294 - 53,884,685 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha356,505,032 - 56,525,563 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0354,283,539 - 54,304,063 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl354,283,551 - 54,304,061 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1353,802,599 - 53,823,082 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0354,013,038 - 54,033,581 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0354,353,560 - 54,374,079 (+)NCBIUU_Cfam_GSD_1.0
Zscan2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640129,658,336 - 129,691,835 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648316,650,440 - 16,676,197 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648316,648,784 - 16,676,907 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZSCAN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1293,746,183 - 3,770,586 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl293,744,923 - 3,769,890 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605943,291,030 - 43,316,243 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zscan2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476817,852,607 - 17,875,180 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476817,852,327 - 17,882,684 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZSCAN2
454 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000056190   ⟹   ENSSSCP00000051402
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl752,954,675 - 52,957,983 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000059370   ⟹   ENSSSCP00000034073
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl752,910,849 - 52,955,886 (-)Ensembl
RefSeq Acc Id: XM_021098907   ⟹   XP_020954566
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1752,934,494 - 52,958,007 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002345783
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1752,910,839 - 52,958,007 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002345784
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1752,910,839 - 52,958,007 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002345785
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1752,910,839 - 52,958,007 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002345786
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1752,910,839 - 52,958,007 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002345787
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1752,910,839 - 52,958,007 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002345788
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1752,910,839 - 52,958,007 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002345789
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1752,910,839 - 52,958,002 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020954566   ⟸   XM_021098907
- UniProtKB: A0A8D1QX68 (UniProtKB/TrEMBL),   A0A8D0II69 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000034073   ⟸   ENSSSCT00000059370
Ensembl Acc Id: ENSSSCP00000051402   ⟸   ENSSSCT00000056190
Protein Domains
C2H2-type   SCAN box


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000036356 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00005013136 UniProtKB/TrEMBL
  ENSSSCG00025064172 UniProtKB/TrEMBL
  ENSSSCG00035052493 UniProtKB/TrEMBL
  ENSSSCG00045031105 UniProtKB/TrEMBL
  ENSSSCG00050063221 UniProtKB/TrEMBL
  ENSSSCG00055016080 UniProtKB/TrEMBL
  ENSSSCG00065011904 UniProtKB/TrEMBL
  ENSSSCG00070017496 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000056190.3 UniProtKB/TrEMBL
  ENSSSCT00005020697.1 UniProtKB/TrEMBL
  ENSSSCT00025088063.1 UniProtKB/TrEMBL
  ENSSSCT00035070000.1 UniProtKB/TrEMBL
  ENSSSCT00045053091.1 UniProtKB/TrEMBL
  ENSSSCT00050086106.1 UniProtKB/TrEMBL
  ENSSSCT00055031790.1 UniProtKB/TrEMBL
  ENSSSCT00065015845.1 UniProtKB/TrEMBL
  ENSSSCT00070034552.1 UniProtKB/TrEMBL
  ENSSSCT00070034556.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.4020.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro C2H2-ZF_Transcription_Reg UniProtKB/TrEMBL
  SCAN-C2H2_zinc_finger UniProtKB/TrEMBL
  SCAN_dom UniProtKB/TrEMBL
  SCAN_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene ZSCAN2 ENTREZGENE
PANTHER KRUEPPEL-LIKE TRANSCRIPTION FACTOR UniProtKB/TrEMBL
  ODD-SKIPPED - RELATED UniProtKB/TrEMBL
  PROTEIN ZBED8-RELATED UniProtKB/TrEMBL
  SCAN DOMAIN-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 2-LIKE-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 208-LIKE UniProtKB/TrEMBL
Pfam SCAN UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE SCAN_BOX UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART SCAN UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Retrovirus capsid dimerization domain-like UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A287B4I7_PIG UniProtKB/TrEMBL
  A0A4X1UI35_PIG UniProtKB/TrEMBL
  A0A8D0II69 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1QX68 ENTREZGENE, UniProtKB/TrEMBL