Zscan2 (zinc finger and SCAN domain containing 2) - Rat Genome Database

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Gene: Zscan2 (zinc finger and SCAN domain containing 2) Ictidomys tridecemlineatus
Analyze
Symbol: Zscan2
Name: zinc finger and SCAN domain containing 2
RGD ID: 12530137
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); INVOLVED IN regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); prostate cancer (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger and SCAN domain containing 2, transcript variant X1; zinc finger and SCAN domain containing 2, transcript variant X2; zinc finger and SCAN domain containing 2, transcript variant X3; zinc finger and SCAN domain containing 2, transcript variant X4; zinc finger and SCAN domain-containing protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640129,658,336 - 129,691,835 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648316,650,440 - 16,676,197 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648316,648,784 - 16,676,907 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Zscan2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640129,658,336 - 129,691,835 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648316,650,440 - 16,676,197 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648316,648,784 - 16,676,907 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZSCAN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381584,601,009 - 84,623,716 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1584,600,986 - 84,627,796 (+)EnsemblGRCh38hg38GRCh38
GRCh371585,144,240 - 85,166,947 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361582,945,253 - 82,967,951 (+)NCBINCBI36Build 36hg18NCBI36
Celera1561,569,776 - 61,592,474 (+)NCBICelera
Cytogenetic Map15q25.2NCBI
HuRef1561,230,162 - 61,252,841 (+)NCBIHuRef
CHM1_11584,985,362 - 85,008,059 (+)NCBICHM1_1
T2T-CHM13v2.01582,353,436 - 82,376,136 (+)NCBIT2T-CHM13v2.0
Zscan2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39780,510,485 - 80,539,740 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl780,510,668 - 80,526,285 (+)EnsemblGRCm39 Ensembl
GRCm38780,860,737 - 80,878,675 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl780,860,920 - 80,876,537 (+)EnsemblGRCm38mm10GRCm38
MGSCv37788,006,994 - 88,021,400 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36780,735,621 - 80,750,027 (+)NCBIMGSCv36mm8
Celera778,270,496 - 78,284,812 (+)NCBICelera
Cytogenetic Map7D3NCBI
cM Map745.71NCBI
Zscan2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81144,243,082 - 144,258,192 (+)NCBIGRCr8
mRatBN7.21134,833,701 - 134,848,957 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1134,833,871 - 134,848,952 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01142,679,308 - 142,695,232 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1142,679,345 - 142,695,475 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01143,630,849 - 143,646,301 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1126,887,996 - 126,902,196 (+)NCBICelera
Cytogenetic Map1q31NCBI
Zscan2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541614,498,183 - 14,514,178 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541614,498,737 - 14,514,178 (-)NCBIChiLan1.0ChiLan1.0
ZSCAN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21673,556,526 - 73,580,350 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11577,776,719 - 77,796,507 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01563,268,141 - 63,291,499 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11582,592,542 - 82,614,592 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1582,595,450 - 82,614,776 (+)Ensemblpanpan1.1panPan2
ZSCAN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1353,864,823 - 53,905,236 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl353,866,294 - 53,884,685 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha356,505,032 - 56,525,563 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0354,283,539 - 54,304,063 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl354,283,551 - 54,304,061 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1353,802,599 - 53,823,082 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0354,013,038 - 54,033,581 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0354,353,560 - 54,374,079 (+)NCBIUU_Cfam_GSD_1.0
ZSCAN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl752,910,849 - 52,957,983 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1752,910,839 - 52,958,007 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZSCAN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1293,746,183 - 3,770,586 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl293,744,923 - 3,769,890 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605943,291,030 - 43,316,243 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zscan2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476817,852,607 - 17,875,180 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476817,852,327 - 17,882,684 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000001738   ⟹   ENSSTOP00000001552
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648316,650,440 - 16,676,197 (+)Ensembl
RefSeq Acc Id: XM_005320169   ⟹   XP_005320226
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640129,658,336 - 129,685,720 (-)NCBI
SpeTri2.0NW_00493648316,648,800 - 16,676,907 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021722924   ⟹   XP_021578599
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640129,658,336 - 129,685,779 (-)NCBI
SpeTri2.0NW_00493648316,648,787 - 16,676,907 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021722925   ⟹   XP_021578600
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640129,658,336 - 129,685,737 (-)NCBI
SpeTri2.0NW_00493648316,648,784 - 16,676,907 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021722927   ⟹   XP_021578602
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640129,658,336 - 129,685,747 (-)NCBI
SpeTri2.0NW_00493648316,648,849 - 16,676,907 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040275110   ⟹   XP_040131044
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640129,658,336 - 129,691,835 (-)NCBI
RefSeq Acc Id: XM_040275111   ⟹   XP_040131045
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640129,658,336 - 129,685,507 (-)NCBI
RefSeq Acc Id: XM_040275112   ⟹   XP_040131046
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640129,658,336 - 129,685,507 (-)NCBI
RefSeq Acc Id: XR_005729313
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640129,660,906 - 129,685,750 (-)NCBI
RefSeq Acc Id: XP_005320226   ⟸   XM_005320169
- UniProtKB: I3LZ46 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021578600   ⟸   XM_021722925
- UniProtKB: I3LZ46 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021578599   ⟸   XM_021722924
- UniProtKB: I3LZ46 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021578602   ⟸   XM_021722927
- UniProtKB: I3LZ46 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040131044   ⟸   XM_040275110
- UniProtKB: I3LZ46 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040131046   ⟸   XM_040275112
- UniProtKB: I3LZ46 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040131045   ⟸   XM_040275111
- UniProtKB: I3LZ46 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000001552   ⟸   ENSSTOT00000001738
Protein Domains
C2H2-type   SCAN box


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000001741 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000001738.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.4020.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro SCAN_dom UniProtKB/TrEMBL
  SCAN_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Zscan2 ENTREZGENE
PANTHER LOW QUALITY PROTEIN: ZINC FINGER PROTEIN 595-LIKE-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
Pfam SCAN UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE SCAN_BOX UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART SCAN UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Retrovirus capsid dimerization domain-like UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt I3LZ46 ENTREZGENE, UniProtKB/TrEMBL