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Gene: YDJC (YdjC chitooligosaccharide deacetylase homolog) Sus scrofa

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Symbol:

YDJC

Name:

YdjC chitooligosaccharide deacetylase homolog

RGD ID:

14152280

Description:

ENCODES a protein that exhibits hydrolase activity (inferred); metal ion binding (inferred); INVOLVED IN carbohydrate metabolic process (inferred); ASSOCIATED WITH chromosome 22q11.2 deletion syndrome, distal (ortholog); DiGeorge syndrome (ortholog)

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

carbohydrate deacetylase; YdjC homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	50,260,788 - 50,262,550 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	50,260,813 - 50,262,553 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	53,711,336 - 53,713,076 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chromosome 22q11.2 deletion syndrome, distal (ISO)

DiGeorge syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

carbohydrate metabolic process (IEA)

Molecular Function

deacetylase activity (IBA)

hydrolase activity (IEA)

metal ion binding (IEA)

References

Additional References at PubMed

PMID:14681463	PMID:17145712	PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

YDJC
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	50,260,788 - 50,262,550 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	50,260,813 - 50,262,553 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	53,711,336 - 53,713,076 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

YDJC
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	21,628,089 - 21,630,022 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	21,628,089 - 21,630,064 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	21,982,378 - 21,984,311 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	20,312,378 - 20,314,340 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	22	5,799,918 - 5,801,880 (-)	NCBI		Celera
Cytogenetic Map	22	q11.21	NCBI
HuRef	22	4,940,252 - 4,942,214 (-)	NCBI		HuRef
CHM1_1	22	21,982,576 - 21,984,538 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	22	22,041,573 - 22,043,506 (-)	NCBI		T2T-CHM13v2.0

Ydjc
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	16,964,813 - 16,966,721 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	16,962,485 - 16,978,565 (+)	Ensembl		GRCm39 Ensembl
GRCm38	16	17,146,949 - 17,148,857 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	17,144,621 - 17,160,701 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	17,147,072 - 17,148,936 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	17,060,542 - 17,062,406 (+)	NCBI		MGSCv36	mm8
Celera	16	17,719,757 - 17,721,621 (+)	NCBI		Celera
Cytogenetic Map	16	A3	NCBI
cM Map	16	10.63	NCBI

Ydjc
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	97,338,529 - 97,348,909 (-)	NCBI		GRCr8
mRatBN7.2	11	83,832,177 - 83,844,691 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	83,841,306 - 83,846,336 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	92,571,489 - 92,573,318 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	85,232,631 - 85,234,460 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	84,286,210 - 84,288,039 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	88,089,142 - 88,094,254 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	88,090,921 - 88,093,516 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	91,135,410 - 91,146,385 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	85,845,500 - 85,848,083 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	85,886,097 - 85,888,680 (-)	NCBI
Celera	11	82,603,512 - 82,605,347 (-)	NCBI		Celera
Cytogenetic Map	11	q23	NCBI

Ydjc
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	17,482,020 - 17,484,853 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955442	17,481,581 - 17,483,858 (+)	NCBI	ChiLan1.0	ChiLan1.0

YDJC
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	31,173,298 - 31,175,877 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	33,722,025 - 33,724,124 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	3,750,719 - 3,752,990 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	20,233,969 - 20,236,172 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	20,233,969 - 20,236,176 (-)	Ensembl	panpan1.1		panPan2

YDJC
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	30,904,103 - 30,906,015 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	30,904,718 - 30,905,951 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	30,861,431 - 30,863,326 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	32,309,921 - 32,311,816 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	32,310,196 - 32,311,744 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	30,359,251 - 30,361,153 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	29,983,002 - 29,984,885 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	31,072,890 - 31,074,806 (-)	NCBI		UU_Cfam_GSD_1.0

Ydjc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	140,687,030 - 140,688,920 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936619	2,065,193 - 2,066,667 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936619	2,065,118 - 2,067,032 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

YDJC
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	4,479,690 - 4,481,915 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	4,479,985 - 4,481,586 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666085	2,517,263 - 2,519,349 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ydjc
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	1,181,956 - 1,183,485 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624747	1,181,617 - 1,183,581 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in YDJC
4 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
8	2	22	3	4	9	8	22	2	6	1

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001243562	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK349979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU633431	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01039068	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000011048 ⟹ ENSSSCP00000010760

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	14	50,260,799 - 50,262,550 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000069798 ⟹ ENSSSCP00000063316

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	14	50,260,788 - 50,261,997 (+)	Ensembl

RefSeq Acc Id:

NM_001243562 ⟹ NP_001230491

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	14	50,260,813 - 50,262,553 (+)	NCBI

Sequence:

show sequence

GCGGAGGCACCATGGCAGGGCCACGCGTACGGCTGGTGGTCACGGCCGACGACTTTGGTTACTG
CCCGCGGCGCGACGAGGGAATCGTAGAAGCCTTTCTGGCGGGGGCTGTGACCAGCGTGTCCCTA
CTGGTCAACGGCGCGGCCGCCGAGAGCGCGGCTGAGCTGGCCAGGAGGCACCGAATCCCCACGG
GCCTCCACGCCAACCTATCCGAGGGCCGCCCCGTGGGCCCGGCCCGCCAAGGCTCCTCGTCGCT
GCTCAGCCCCAAAGGCTTCTTCCTCGGCAAGATGGGGTTCCGAGAGGCGGTGGCTGCCGGAGAC
GTAGTCTTGCCTCAGGTGCGAGAAGAGCTGGAGGCTCAGCTGAGCCGTTTCCGGGAATTACTGG
GCAGGGACCCAACTCACGTGGACGGGCACCAGCACGTTCATGTGCTCCCAGGCGTGTGCCAGGT
GTTCGCCGAGGCGCTGCAGGCCTTCGGGGTGCGCTTCACCAGGCTGCCGCTGGAGCGCGGGGTG
GGCAGCTGCACTTGGCTCGAGGGCCCAGCGCGCGCCTTCGCCTGCGCTGTGGAGCAGGACGCCC
GGGCTGCCATCGGCCCCTTCGCCCGCCATGGCCTACGGTGGACCGATGCCTTCATGGGTCTGAG
CACCTGTGGCCGGCACATGTCTGCTCACCGTGTATCAGGGGCACTAGCTCGGGCCCTGGAAGGT
ATACCTCCACGCCGTGCAGTGACGGCCGAGCTGATGGCGCACCCGGGCTACCCGAGTGTGCCTC
CAGCTGGGGGCTGCGGTGAGGGCCCTGATGCCTTTTCCTGCTCTTGGGAGCGGCTGCACGAGCT
GCGCGTCCTCACCGCCCCGGCGCTGCGGGCTCGACTTGCCCAGGACGGCGTGCAACTCTGTGCC
CTTGACGACCTAGACTCCAAGAAGTCCAGAGAGGGGAAGCCTAATGAAGCCACTCTGGAAACCT
TGCTGGAGCCCTCCTCACCATGACCCTGGCAAAGCAGGCTGTGACTTCCTGGGCTGGACTCTGC
CATCTCTGTACGCAGGTCCTGATGGCTCAGAGCTTCCGCAAGCCCTCTGGCTGCGGGTAGCAGC
GGTGACCTCTGGGCCTGGGGCCTTCCAAGCACTGGGGGCTTTCTTGGTGCCATGTAAGCATCTT
CCTTGGGCAGAGATGACTAATAAAGTAACATGTGTCCTGTAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001230491	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000010760
	ENSSSCP00000010760.2
	ENSSSCP00000063316.1
	ENSSSCP00015022697.1
	ENSSSCP00015022740.1
	ENSSSCP00025024856.1
	ENSSSCP00025024916.1
	ENSSSCP00030048180.1
	ENSSSCP00030048185.1
	ENSSSCP00035037411.1
	ENSSSCP00035037417.1
	ENSSSCP00040040320.1
	ENSSSCP00040040358.1
	ENSSSCP00045014392.1
	ENSSSCP00045014408.1
	ENSSSCP00050034772.1
	ENSSSCP00050034773.1
	ENSSSCP00055046099.1
	ENSSSCP00055046124.1
	ENSSSCP00060022221.1
	ENSSSCP00060022222.1
	ENSSSCP00065032918.1
	ENSSSCP00065032921.1
	ENSSSCP00070034177.1
	ENSSSCP00070034181.1

RefSeq Acc Id:

NP_001230491 ⟸ NM_001243562

- UniProtKB:

F1RKY7 (UniProtKB/TrEMBL), A0A4X1V0J3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAGPRVRLVVTADDFGYCPRRDEGIVEAFLAGAVTSVSLLVNGAAAESAAELARRHRIPTGLHA
NLSEGRPVGPARQGSSSLLSPKGFFLGKMGFREAVAAGDVVLPQVREELEAQLSRFRELLGRDP
THVDGHQHVHVLPGVCQVFAEALQAFGVRFTRLPLERGVGSCTWLEGPARAFACAVEQDARAAI
GPFARHGLRWTDAFMGLSTCGRHMSAHRVSGALARALEGIPPRRAVTAELMAHPGYPSVPPAGG
CGEGPDAFSCSWERLHELRVLTAPALRARLAQDGVQLCALDDLDSKKSREGKPNEATLETLLEP
SSP

hide sequence

Ensembl Acc Id:

ENSSSCP00000010760 ⟸ ENSSSCT00000011048

Ensembl Acc Id:

ENSSSCP00000063316 ⟸ ENSSSCT00000069798

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000010087	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015042482	UniProtKB/TrEMBL
	ENSSSCG00025043291	UniProtKB/TrEMBL
	ENSSSCG00030074217	UniProtKB/TrEMBL
	ENSSSCG00035066433	UniProtKB/TrEMBL
	ENSSSCG00040066892	UniProtKB/TrEMBL
	ENSSSCG00045012269	UniProtKB/TrEMBL
	ENSSSCG00050059471	UniProtKB/TrEMBL
	ENSSSCG00055029018	UniProtKB/TrEMBL
	ENSSSCG00060038646	UniProtKB/TrEMBL
	ENSSSCG00065055316	UniProtKB/TrEMBL
	ENSSSCG00070020492	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000011048	ENTREZGENE
	ENSSSCT00000011048.3	UniProtKB/TrEMBL
	ENSSSCT00000069798.1	UniProtKB/TrEMBL
	ENSSSCT00015056656.1	UniProtKB/TrEMBL
	ENSSSCT00015056756.1	UniProtKB/TrEMBL
	ENSSSCT00025058683.1	UniProtKB/TrEMBL
	ENSSSCT00025058790.1	UniProtKB/TrEMBL
	ENSSSCT00030104069.1	UniProtKB/TrEMBL
	ENSSSCT00030104077.1	UniProtKB/TrEMBL
	ENSSSCT00035089493.1	UniProtKB/TrEMBL
	ENSSSCT00035089504.1	UniProtKB/TrEMBL
	ENSSSCT00040091446.1	UniProtKB/TrEMBL
	ENSSSCT00040091517.1	UniProtKB/TrEMBL
	ENSSSCT00045020903.1	UniProtKB/TrEMBL
	ENSSSCT00045020926.1	UniProtKB/TrEMBL
	ENSSSCT00050081007.1	UniProtKB/TrEMBL
	ENSSSCT00050081012.1	UniProtKB/TrEMBL
	ENSSSCT00055057615.1	UniProtKB/TrEMBL
	ENSSSCT00055057648.1	UniProtKB/TrEMBL
	ENSSSCT00060052232.1	UniProtKB/TrEMBL
	ENSSSCT00060052234.1	UniProtKB/TrEMBL
	ENSSSCT00065075701.1	UniProtKB/TrEMBL
	ENSSSCT00065075707.1	UniProtKB/TrEMBL
	ENSSSCT00070040732.1	UniProtKB/TrEMBL
	ENSSSCT00070040736.1	UniProtKB/TrEMBL
Gene3D-CATH	Glycoside hydrolase/deacetylase	UniProtKB/TrEMBL
InterPro	Glyco_hydro/deAcase_b/a-brl	UniProtKB/TrEMBL
	YdjC-like	UniProtKB/TrEMBL
KEGG Report	ssc:100155573	UniProtKB/TrEMBL
NCBI Gene	YDJC	ENTREZGENE
PANTHER	CARBOHYDRATE DEACETYLASE	UniProtKB/TrEMBL
	PTHR31609	UniProtKB/TrEMBL
Pfam	YdjC	UniProtKB/TrEMBL
Superfamily-SCOP	SSF88713	UniProtKB/TrEMBL
UniProt	A0A4X1UXU8_PIG	UniProtKB/TrEMBL
	A0A4X1V0J3	ENTREZGENE, UniProtKB/TrEMBL
	A0A5G2QF25_PIG	UniProtKB/TrEMBL
	F1RKY7	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:95022	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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