HNRNPR (heterogeneous nuclear ribonucleoprotein R) - Rat Genome Database

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Gene: HNRNPR (heterogeneous nuclear ribonucleoprotein R) Sus scrofa
Analyze
Symbol: HNRNPR
Name: heterogeneous nuclear ribonucleoprotein R (Ensembl:heteroous nuclear ribonucleoprotein R)
RGD ID: 14144651
Description: ENCODES a protein that exhibits mRNA 3'-UTR binding (ortholog); INVOLVED IN circadian rhythm (ortholog); mRNA destabilization (ortholog); negative regulation of catalytic activity (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH 3-Hydroxy-3-Methylglutaryl-CoA Lyase Deficiency (ortholog); Breast Neoplasms (ortholog); genetic disease (ortholog); FOUND IN axon terminus (ortholog); dendrite (ortholog); growth cone (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: heterogeneous nuclear ribonucleoprotein R tv2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl681,196,062 - 81,239,406 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1681,203,067 - 81,239,823 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2675,260,326 - 75,261,878 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
HNRNPR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl681,196,062 - 81,239,406 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1681,203,067 - 81,239,823 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2675,260,326 - 75,261,878 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HNRNPR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38123,304,688 - 23,344,284 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl123,303,771 - 23,344,336 (-)EnsemblGRCh38hg38GRCh38
GRCh37123,631,181 - 23,670,777 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36123,508,863 - 23,543,440 (-)NCBINCBI36Build 36hg18NCBI36
Build 34123,381,581 - 23,416,090NCBI
Celera121,965,908 - 22,000,508 (-)NCBICelera
Cytogenetic Map1p36.12NCBI
HuRef121,888,335 - 21,922,947 (-)NCBIHuRef
CHM1_1123,748,964 - 23,783,552 (-)NCBICHM1_1
T2T-CHM13v2.0123,137,824 - 23,177,454 (-)NCBIT2T-CHM13v2.0
Hnrnpr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394136,038,230 - 136,086,758 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4136,038,253 - 136,086,758 (+)EnsemblGRCm39 Ensembl
GRCm384136,310,942 - 136,345,981 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4136,310,942 - 136,359,447 (+)EnsemblGRCm38mm10GRCm38
MGSCv374135,866,891 - 135,896,593 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364135,583,048 - 135,612,754 (+)NCBIMGSCv36mm8
Celera4134,504,233 - 134,541,867 (+)NCBICelera
Cytogenetic Map4D3NCBI
cM Map468.4NCBI
Hnrnpr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85153,826,482 - 153,872,272 (+)NCBIGRCr8
mRatBN7.25148,542,999 - 148,574,888 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5148,543,044 - 148,574,867 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5151,240,600 - 151,272,452 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05153,014,891 - 153,046,743 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05152,996,900 - 153,028,752 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05154,668,194 - 154,699,967 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5154,668,179 - 154,699,966 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05158,435,433 - 158,467,206 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45155,053,567 - 155,086,482 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15155,063,605 - 155,096,519 (+)NCBI
Celera5146,943,785 - 146,975,518 (+)NCBICelera
Cytogenetic Map5q36NCBI
Hnrnpr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554523,315,133 - 3,355,508 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554523,318,536 - 3,354,725 (-)NCBIChiLan1.0ChiLan1.0
HNRNPR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21203,596,951 - 203,631,217 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11202,699,926 - 202,734,209 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0122,501,816 - 22,536,050 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1123,491,310 - 23,536,807 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl123,491,310 - 23,521,977 (-)Ensemblpanpan1.1panPan2
HNRNPR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1276,073,553 - 76,108,763 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl276,077,022 - 76,105,433 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha272,578,464 - 72,613,658 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0276,632,113 - 76,667,329 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl276,632,148 - 76,669,310 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1273,454,127 - 73,489,619 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0274,461,516 - 74,497,259 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0275,466,676 - 75,501,874 (+)NCBIUU_Cfam_GSD_1.0
Hnrnpr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505842,706,668 - 42,742,983 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364748,531,434 - 8,567,767 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364748,531,434 - 8,567,734 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HNRNPR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120109,325,850 - 109,357,624 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660336,963,189 - 6,997,405 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hnrnpr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247647,957,395 - 7,992,398 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247647,956,789 - 7,992,449 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in HNRNPR
429 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 2 3 5 2 23 2 3 3
Low 2
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000026348   ⟹   ENSSSCP00000019544
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl681,203,749 - 81,239,135 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000044093   ⟹   ENSSSCP00000058666
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl681,196,062 - 81,239,406 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000045044   ⟹   ENSSSCP00000042979
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl681,196,062 - 81,239,406 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000098854   ⟹   ENSSSCP00000074685
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl681,197,737 - 81,232,996 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000105634   ⟹   ENSSSCP00000077838
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl681,203,094 - 81,239,353 (-)Ensembl
RefSeq Acc Id: XM_021095510   ⟹   XP_020951169
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1681,203,067 - 81,239,416 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021095511   ⟹   XP_020951170
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1681,203,072 - 81,239,411 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021095512   ⟹   XP_020951171
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1681,203,072 - 81,239,407 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021095513   ⟹   XP_020951172
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1681,203,079 - 81,239,823 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021095514   ⟹   XP_020951173
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1681,203,072 - 81,239,146 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021095515   ⟹   XP_020951174
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1681,203,072 - 81,239,416 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021095516   ⟹   XP_020951175
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1681,203,072 - 81,239,411 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020951169   ⟸   XM_021095510
- Peptide Label: isoform X1
- UniProtKB: A0A4X1VUG8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020951174   ⟸   XM_021095515
- Peptide Label: isoform X3
- UniProtKB: A0A8W4F8P0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020951175   ⟸   XM_021095516
- Peptide Label: isoform X4
- UniProtKB: A0A0B8RTL5 (UniProtKB/TrEMBL),   A0A8W4F8P0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020951170   ⟸   XM_021095511
- Peptide Label: isoform X1
- UniProtKB: A0A4X1VUG8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020951171   ⟸   XM_021095512
- Peptide Label: isoform X2
- UniProtKB: A0A8D0J1J4 (UniProtKB/TrEMBL),   M3V815 (UniProtKB/TrEMBL),   A0A4X1VUG8 (UniProtKB/TrEMBL),   A0A8D1RNI3 (UniProtKB/TrEMBL),   A0A8D1CB31 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020951173   ⟸   XM_021095514
- Peptide Label: isoform X2
- UniProtKB: A0A8D0J1J4 (UniProtKB/TrEMBL),   M3V815 (UniProtKB/TrEMBL),   A0A4X1VUG8 (UniProtKB/TrEMBL),   A0A8D1RNI3 (UniProtKB/TrEMBL),   A0A8D1CB31 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020951172   ⟸   XM_021095513
- Peptide Label: isoform X2
- UniProtKB: A0A8D0J1J4 (UniProtKB/TrEMBL),   M3V815 (UniProtKB/TrEMBL),   A0A4X1VUG8 (UniProtKB/TrEMBL),   A0A8D1RNI3 (UniProtKB/TrEMBL),   A0A8D1CB31 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000058666   ⟸   ENSSSCT00000044093
RefSeq Acc Id: ENSSSCP00000019544   ⟸   ENSSSCT00000026348
RefSeq Acc Id: ENSSSCP00000042979   ⟸   ENSSSCT00000045044
RefSeq Acc Id: ENSSSCP00000074685   ⟸   ENSSSCT00000098854
RefSeq Acc Id: ENSSSCP00000077838   ⟸   ENSSSCT00000105634
Protein Domains
RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000023761 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005017609 UniProtKB/TrEMBL
  ENSSSCG00015066502 UniProtKB/TrEMBL
  ENSSSCG00025024388 UniProtKB/TrEMBL
  ENSSSCG00030048806 UniProtKB/TrEMBL
  ENSSSCG00035077363 UniProtKB/TrEMBL
  ENSSSCG00040074052 UniProtKB/TrEMBL
  ENSSSCG00045014683 UniProtKB/TrEMBL
  ENSSSCG00050067461 UniProtKB/TrEMBL
  ENSSSCG00055021502 UniProtKB/TrEMBL
  ENSSSCG00060054790 UniProtKB/TrEMBL
  ENSSSCG00065002993 UniProtKB/TrEMBL
  ENSSSCG00070027776 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000026348 ENTREZGENE
  ENSSSCT00000026348.3 UniProtKB/TrEMBL
  ENSSSCT00000044093 ENTREZGENE
  ENSSSCT00000044093.3 UniProtKB/TrEMBL
  ENSSSCT00000045044.3 UniProtKB/TrEMBL
  ENSSSCT00000098854 ENTREZGENE
  ENSSSCT00000098854.1 UniProtKB/TrEMBL
  ENSSSCT00000105634 ENTREZGENE
  ENSSSCT00000105634.1 UniProtKB/TrEMBL
  ENSSSCT00005028035.1 UniProtKB/TrEMBL
  ENSSSCT00005028077.1 UniProtKB/TrEMBL
  ENSSSCT00005028104.1 UniProtKB/TrEMBL
  ENSSSCT00005028119.1 UniProtKB/TrEMBL
  ENSSSCT00005028148.1 UniProtKB/TrEMBL
  ENSSSCT00015089749.1 UniProtKB/TrEMBL
  ENSSSCT00025033397.1 UniProtKB/TrEMBL
  ENSSSCT00030068175.1 UniProtKB/TrEMBL
  ENSSSCT00035105656.1 UniProtKB/TrEMBL
  ENSSSCT00040102474.1 UniProtKB/TrEMBL
  ENSSSCT00045025091.1 UniProtKB/TrEMBL
  ENSSSCT00050092072.1 UniProtKB/TrEMBL
  ENSSSCT00055042728.1 UniProtKB/TrEMBL
  ENSSSCT00060074668.1 UniProtKB/TrEMBL
  ENSSSCT00065003970.1 UniProtKB/TrEMBL
  ENSSSCT00070055746.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro hnRNP_Q_AcD UniProtKB/TrEMBL
  HnRNP_R/Q_splicing_fac UniProtKB/TrEMBL
  hnRNPR_RRM1 UniProtKB/TrEMBL
  hnRNPR_RRM2 UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
NCBI Gene HNRNPR ENTREZGENE
PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN UniProtKB/TrEMBL
  HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN R UniProtKB/TrEMBL
Pfam hnRNP_Q_AcD UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A0B8RTL5 ENTREZGENE
  A0A287AGF0_PIG UniProtKB/TrEMBL
  A0A4X1VUG8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0IXD7_PIG UniProtKB/TrEMBL
  A0A8D0J1J4 ENTREZGENE
  A0A8D1CB31 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1G813_PIG UniProtKB/TrEMBL
  A0A8D1RNI3 ENTREZGENE
  A0A8D1TMU8_PIG UniProtKB/TrEMBL
  A0A8W4F8P0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FHQ4_PIG UniProtKB/TrEMBL
  I3L693_PIG UniProtKB/TrEMBL
  M3V815 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A8D0J1J4 UniProtKB/TrEMBL
  A0A8D1RNI3 UniProtKB/TrEMBL
VGNC ID VGNC:88925 ENTREZGENE