ETAA1 (ETAA1 activator of ATR kinase) - Rat Genome Database

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Gene: ETAA1 (ETAA1 activator of ATR kinase) Sus scrofa
Analyze
Symbol: ETAA1
Name: ETAA1 activator of ATR kinase
RGD ID: 14138344
Description: ENCODES a protein that exhibits protein serine/threonine kinase activator activity (inferred); INVOLVED IN positive regulation of protein serine/threonine kinase activity (ortholog); ASSOCIATED WITH pancreatic cancer (ortholog); FOUND IN cytosol (inferred); nuclear replication fork (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ETAA1, ATR kinase activator; Ewing tumor associated antigen 1; ewing's tumor-associated antigen 1; ewing's tumor-associated antigen 1 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl374,724,291 - 74,736,764 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1374,721,313 - 74,736,784 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2378,383,969 - 78,406,445 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
ETAA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl374,724,291 - 74,736,764 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1374,721,313 - 74,736,784 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2378,383,969 - 78,406,445 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ETAA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38267,397,333 - 67,412,089 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl267,397,322 - 67,412,089 (+)EnsemblGRCh38hg38GRCh38
GRCh37267,624,465 - 67,639,221 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36267,477,946 - 67,491,037 (+)NCBINCBI36Build 36hg18NCBI36
Celera267,473,171 - 67,486,260 (+)NCBICelera
Cytogenetic Map2p14NCBI
HuRef267,362,342 - 67,375,379 (+)NCBIHuRef
CHM1_1267,555,586 - 67,568,671 (+)NCBICHM1_1
T2T-CHM13v2.0267,407,046 - 67,421,800 (+)NCBIT2T-CHM13v2.0
Etaa1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391117,888,753 - 17,903,875 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1117,888,756 - 17,903,875 (-)EnsemblGRCm39 Ensembl
GRCm381117,938,753 - 17,953,875 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1117,938,756 - 17,953,875 (-)EnsemblGRCm38mm10GRCm38
MGSCv371117,838,752 - 17,853,878 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361117,839,895 - 17,853,851 (-)NCBIMGSCv36mm8
Celera1120,118,628 - 20,133,382 (-)NCBICelera
Cytogenetic Map11A3.1NCBI
cM Map1110.44NCBI
Etaa1-ps1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8312,759,111 - 12,763,422 (-)NCBIGRCr8
mRatBN7.2 Ensembl1492,299,553 - 92,314,104 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.014102,290,655 - 102,293,674 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14102,290,418 - 102,293,677 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014102,044,751 - 102,052,740 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map14q22NCBI
Etaa1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542417,307,963 - 17,320,007 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542417,271,690 - 17,321,276 (-)NCBIChiLan1.0ChiLan1.0
ETAA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21258,990,618 - 59,005,107 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A58,994,565 - 59,009,056 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A67,455,668 - 67,470,509 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A68,578,554 - 68,591,534 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A68,578,554 - 68,591,534 (+)Ensemblpanpan1.1panPan2
ETAA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11066,631,411 - 66,644,753 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1066,631,544 - 66,643,728 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1066,521,408 - 66,534,754 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01067,646,077 - 67,659,426 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1067,646,213 - 67,659,426 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11067,334,087 - 67,347,431 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01067,630,250 - 67,643,608 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01067,926,410 - 67,939,762 (+)NCBIUU_Cfam_GSD_1.0
Etaa1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629216,595,418 - 16,609,129 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649111,962,087 - 11,979,349 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649111,962,161 - 11,975,164 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ETAA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11439,658,974 - 39,673,093 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1439,659,873 - 39,673,259 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604572,262,154 - 72,277,103 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Etaa1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247625,916,038 - 5,923,783 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ETAA1
356 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000050623   ⟹   ENSSSCP00000033406
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl374,724,291 - 74,736,764 (-)Ensembl
RefSeq Acc Id: XM_021087430   ⟹   XP_020943089
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1374,721,313 - 74,736,783 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021087431   ⟹   XP_020943090
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1374,724,430 - 74,736,784 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021087432   ⟹   XP_020943091
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1374,724,291 - 74,736,784 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021087433   ⟹   XP_020943092
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1374,721,313 - 74,736,774 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021087434   ⟹   XP_020943093
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1374,721,313 - 74,735,280 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021087435   ⟹   XP_020943094
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1374,721,313 - 74,736,438 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020943089   ⟸   XM_021087430
- Peptide Label: isoform X1
- UniProtKB: A0A8D0JVM9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943092   ⟸   XM_021087433
- Peptide Label: isoform X3
- UniProtKB: A0A286ZP87 (UniProtKB/TrEMBL),   A0A4X1W4N6 (UniProtKB/TrEMBL),   A0A480YLW6 (UniProtKB/TrEMBL),   A0A8D0JVM9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943094   ⟸   XM_021087435
- Peptide Label: isoform X4
- UniProtKB: A0A4X1WAH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943093   ⟸   XM_021087434
- Peptide Label: isoform X4
- UniProtKB: A0A4X1WAH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943091   ⟸   XM_021087432
- Peptide Label: isoform X2
- UniProtKB: A0A8D0JVM9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943090   ⟸   XM_021087431
- Peptide Label: isoform X2
- UniProtKB: A0A8D0JVM9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000033406   ⟸   ENSSSCT00000050623


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000023908 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015052329 UniProtKB/TrEMBL
  ENSSSCG00025042411 UniProtKB/TrEMBL
  ENSSSCG00030028738 UniProtKB/TrEMBL
  ENSSSCG00035078097 UniProtKB/TrEMBL
  ENSSSCG00040061443 UniProtKB/TrEMBL
  ENSSSCG00045020962 UniProtKB/TrEMBL
  ENSSSCG00050044733 UniProtKB/TrEMBL
  ENSSSCG00055013344 UniProtKB/TrEMBL
  ENSSSCG00065037841 UniProtKB/TrEMBL
  ENSSSCG00070029963 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000050623 ENTREZGENE
  ENSSSCT00000050623.3 UniProtKB/TrEMBL
  ENSSSCT00015069621.1 UniProtKB/TrEMBL
  ENSSSCT00025057452.1 UniProtKB/TrEMBL
  ENSSSCT00030040130.1 UniProtKB/TrEMBL
  ENSSSCT00035106525.1 UniProtKB/TrEMBL
  ENSSSCT00035106539.1 UniProtKB/TrEMBL
  ENSSSCT00040083646.1 UniProtKB/TrEMBL
  ENSSSCT00045035767.1 UniProtKB/TrEMBL
  ENSSSCT00050060888.1 UniProtKB/TrEMBL
  ENSSSCT00055026293.1 UniProtKB/TrEMBL
  ENSSSCT00065051696.1 UniProtKB/TrEMBL
  ENSSSCT00070060224.1 UniProtKB/TrEMBL
  ENSSSCT00070060225.1 UniProtKB/TrEMBL
  ENSSSCT00070060226.1 UniProtKB/TrEMBL
InterPro ETAA1 UniProtKB/TrEMBL
NCBI Gene ETAA1 ENTREZGENE
PANTHER EWING'S TUMOR-ASSOCIATED ANTIGEN 1 UniProtKB/TrEMBL
  PTHR16434 UniProtKB/TrEMBL
Pfam ETAA1 UniProtKB/TrEMBL
UniProt A0A286ZP87 ENTREZGENE
  A0A480YLW6 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W4N6 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1WA31_PIG UniProtKB/TrEMBL
  A0A4X1WAH8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0JVM9 ENTREZGENE
  A0A8D0W9G8_PIG UniProtKB/TrEMBL
  A0A8D1BMA2_PIG UniProtKB/TrEMBL
  A0A8X9AEH7_PIG UniProtKB/TrEMBL
UniProt Secondary A0A286ZP87 UniProtKB/TrEMBL
VGNC ID VGNC:87799 ENTREZGENE