ZNF275 (zinc finger protein 275) - Rat Genome Database

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Gene: ZNF275 (zinc finger protein 275) Sus scrofa
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Symbol: ZNF275
Name: zinc finger protein 275
RGD ID: 14138328
Description: ENCODES a protein that exhibits zinc ion binding (inferred); INVOLVED IN positive regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN nucleus (inferred); INTERACTS WITH zearalenone
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1X124,156,708 - 124,173,566 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X141,566,965 - 141,577,366 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
zearalenone  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IEA)

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
ZNF275
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1X124,156,708 - 124,173,566 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X141,566,965 - 141,577,366 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF275
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X153,334,153 - 153,352,926 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX153,334,147 - 153,360,110 (+)EnsemblGRCh38hg38GRCh38
GRCh37X152,599,611 - 152,618,384 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic MapXq28NCBI
HuRefX141,258,986 - 141,277,654 (+)NCBIHuRef
CHM1_1X152,474,077 - 152,492,846 (+)NCBICHM1_1
T2T-CHM13v2.0X151,601,682 - 151,620,455 (+)NCBIT2T-CHM13v2.0
ZNF275
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X121,161,954 - 121,179,207 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX121,173,094 - 121,174,224 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX106,495,162 - 106,509,562 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X124,303,928 - 124,318,322 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX124,315,048 - 124,316,178 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X120,076,586 - 120,090,984 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X122,590,338 - 122,604,726 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X122,354,034 - 122,368,434 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in ZNF275
156 total Variants

Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_021079971   ⟹   XP_020935630
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X124,156,708 - 124,173,566 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021079972   ⟹   XP_020935631
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X124,156,903 - 124,173,566 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020935630   ⟸   XM_021079971
- UniProtKB: A0A286ZQC0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935631   ⟸   XM_021079972
- UniProtKB: A0A286ZQC0 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000049239 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015070048 UniProtKB/TrEMBL
  ENSSSCG00025073800 UniProtKB/TrEMBL
  ENSSSCG00030025643 UniProtKB/TrEMBL
  ENSSSCG00035038012 UniProtKB/TrEMBL
  ENSSSCG00045031011 UniProtKB/TrEMBL
  ENSSSCG00055008469 UniProtKB/TrEMBL
  ENSSSCG00060004951 UniProtKB/TrEMBL
  ENSSSCG00065014390 UniProtKB/TrEMBL
  ENSSSCG00070005097 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000073463 ENTREZGENE
  ENSSSCT00000073463.2 UniProtKB/TrEMBL
  ENSSSCT00015094001.1 UniProtKB/TrEMBL
  ENSSSCT00015094129.1 UniProtKB/TrEMBL
  ENSSSCT00025101654.1 UniProtKB/TrEMBL
  ENSSSCT00025101727.1 UniProtKB/TrEMBL
  ENSSSCT00030035827.1 UniProtKB/TrEMBL
  ENSSSCT00035050422.1 UniProtKB/TrEMBL
  ENSSSCT00035050429.1 UniProtKB/TrEMBL
  ENSSSCT00045052972.1 UniProtKB/TrEMBL
  ENSSSCT00045053063.1 UniProtKB/TrEMBL
  ENSSSCT00055016587.1 UniProtKB/TrEMBL
  ENSSSCT00055016624.1 UniProtKB/TrEMBL
  ENSSSCT00060006172.1 UniProtKB/TrEMBL
  ENSSSCT00065019152.1 UniProtKB/TrEMBL
  ENSSSCT00065019160.1 UniProtKB/TrEMBL
  ENSSSCT00070009665.1 UniProtKB/TrEMBL
  ENSSSCT00070009678.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Krueppel_C2H2_ZnFinger UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene ZNF275 ENTREZGENE
PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  IP01015P-RELATED UniProtKB/TrEMBL
  ZINC FINGER AND SCAN DOMAIN-CONTAINING UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 275 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 345-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 780A UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A286ZQC0 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SY97_PIG UniProtKB/TrEMBL
  A0A4X1SZL8_PIG UniProtKB/TrEMBL
  A0A8D0TJF2_PIG UniProtKB/TrEMBL
  A0A8D1PY60_PIG UniProtKB/TrEMBL
  A0A8W4FM57_PIG UniProtKB/TrEMBL