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Gene: CCDC152 (coiled-coil domain containing 152) Sus scrofa

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Symbol:

CCDC152

Name:

coiled-coil domain containing 152

RGD ID:

14133865

Description:

ASSOCIATED WITH basal cell carcinoma (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

coiled-coil domain-containing protein 152

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	27,471,003 - 27,538,665 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	27,474,697 - 27,538,361 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	28,955,196 - 29,022,407 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

basal cell carcinoma (ISO)

developmental and epileptic encephalopathy (ISO)

early infantile epileptic encephalopathy (ISO)

Neurodevelopmental Disorders (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

CCDC152
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	27,471,003 - 27,538,665 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	27,474,697 - 27,538,361 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	28,955,196 - 29,022,407 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCDC152
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	42,756,818 - 42,802,439 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	42,756,818 - 42,802,439 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	42,756,920 - 42,802,541 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	42,765,152 - 42,838,296 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	42,646,453 - 42,692,073 (+)	NCBI		Celera
Cytogenetic Map	5	p12	NCBI
HuRef	5	42,708,340 - 42,753,960 (+)	NCBI		HuRef
CHM1_1	5	42,758,809 - 42,804,435 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	43,009,758 - 43,055,382 (+)	NCBI		T2T-CHM13v2.0

Ccdc152
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	3,309,725 - 3,334,209 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	3,309,552 - 3,333,008 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	3,280,099 - 3,303,526 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	3,280,070 - 3,303,526 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	3,230,627 - 3,253,526 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	3,230,627 - 3,251,191 (-)	NCBI		MGSCv36	mm8
Celera	15	3,145,142 - 3,168,071 (-)	NCBI		Celera
Cytogenetic Map	15	A1	NCBI
cM Map	15	1.84	NCBI

Ccdc152
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	54,236,013 - 54,260,531 (-)	NCBI		GRCr8
mRatBN7.2	2	52,507,987 - 52,532,880 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	52,507,981 - 52,532,826 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	59,608,369 - 59,630,468 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	57,667,099 - 57,689,198 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	52,697,007 - 52,720,216 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	53,116,105 - 53,140,661 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	53,116,101 - 53,140,637 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	72,147,977 - 72,172,965 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	52,462,254 - 52,484,420 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	2	48,223,154 - 48,245,190 (-)	NCBI		Celera
Cytogenetic Map	2	q16	NCBI

Ccdc152
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955426	26,899,303 - 26,950,423 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955426	26,899,303 - 26,950,428 (+)	NCBI	ChiLan1.0	ChiLan1.0

CCDC152
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	67,534,555 - 67,578,176 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	65,688,181 - 65,731,772 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	67,581,588 - 67,625,340 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	72,625,591 - 72,671,093 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	72,625,591 - 72,671,093 (-)	Ensembl	panpan1.1		panPan2

CCDC152
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	66,955,016 - 66,989,208 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	66,964,271 - 66,988,668 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	66,637,231 - 66,669,206 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	67,464,735 - 67,498,822 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	67,473,979 - 67,496,241 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	67,208,561 - 67,242,639 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	67,339,035 - 67,370,908 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	67,874,582 - 67,907,467 (-)	NCBI		UU_Cfam_GSD_1.0

Ccdc152
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	231,161,483 - 231,206,045 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936518	167,017 - 208,187 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936518	167,017 - 208,187 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC152
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	41,495,323 - 41,544,709 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	41,497,708 - 41,544,009 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666071	31,926,556 - 31,987,816 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccdc152
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624759	12,218,589 - 12,248,230 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624759	12,218,619 - 12,266,941 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CCDC152
2787 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	4	20	3	2	5	14	12	20	3	6	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021076773	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU972496	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000018371 ⟹ ENSSSCP00000017875

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	16	27,471,003 - 27,538,665 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000082583 ⟹ ENSSSCP00000072265

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	16	27,471,003 - 27,538,665 (+)	Ensembl

RefSeq Acc Id:

XM_021076773 ⟹ XP_020932432

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	16	27,474,697 - 27,538,361 (+)	NCBI

Sequence:

show sequence

ATGAATCAAAGCAGCGAAGGATGTATGAAAAAGATTGGCAGTGTGAATCTTGACAAACTTATAA
ATGACTTCTCACAGATAGAAAAAAAAATGATAGAAATCAGTGGAAAGAACAACATACTGGATAT
GCAGTTGGAAAAAGCTAACTGTTTGCTAAAAGTAATGCAAACAAAGGAGGTCTCAATTAAAGAA
GAATGTGCTACTCTTCATGATATGATAAAAGGGCTGCAACAGACTGTTGAATATCATCATAATT
TGAAAGGTGAAAATGAACAACTAAAAAGAAATTCTGATCTTATGAAAGAAAAGTTAAAATCTCA
TGAACAGGAATATAAGAATAATATTGCCAAACTTATGAATGAAATGAAAATCAAAGAAGAGGGA
CATAAGATAGAAATAACAAAACTTTATCAGGATATGCAGAAAAAAGTTGAATTAAATGAAGAAA
AGAATAAAGAACTGATAGAGAAAAAGGAGATGGAAATTTCAGAGTTAAATGCAAAGTTAAGAAC
TCAAGAAAAGGAAAAACAAAATGAAATAGTCAAACTACAGCTAGAGTTTGATGCCAAGCTAGCA
AGAGTTCAAACTAAAGCAAAACCATATCCAGATTCTACTGTTCTGCCACACAGTATCTACAGAA
GGAAGCTTCAACATCTTCAAGAAGAAAAAAACAAGGAGATTGCAATTCTTCGTAATACCATTCA
TGACTTAGAGCAACGCCTCTCTGTCAGCAAAGATTCTCAACTTAAACTCGTTGGCAAAGATTCT
CACTTTAAGCGTAGACGGTTTTGAATATAGAAGTAAATTTATTAGTTGCTATTTTCTTTAAAAG
CAGTTGAAAATTCATTTCTGTTGACAAATAACATACTACCTAAGTAATAACAACAATGACAACA
AAAAGACAACTTCAAACTGTTTTATTGAGTTTAAACATAGCCATACTTTTGCCAATTGTGTACT
GCATTCTTGCTTAATAGTATTAACCATGAAAGAGTTCAGGTTTATAGGACTTAGTTTACCTAAT
GAACCATCATTGACTATGGAAATACTTTCTAAGCCATCAAGAGATAAACAACATTCTTTTATCT
CTTCCTATCTTCCACAACTGGCAATCTCAAATTTTAAAGAGTATGATACAATACTAGATAAAGA
AAACAAGATATAAGGCTTCATTCTGATGTGATAGTAAAAATCAAGGTATGAGTCTTAGATATAA
AAAAGTATAAATGGATATTTAAAATATAATCATAGCAAAATATTCATGTGTAAGTATTTCTGGA
TCTGAAAAGATAGAATTCACTGTTCTTTAAAGGTTTGATCTGTTAAAAACATAAGATTAAGAAG
ACAAAGGTAATATTGTTTTGAGAAATAAGTAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_020932432	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000017875.3
	ENSSSCP00000072265
	ENSSSCP00000072265.1
	ENSSSCP00025032463.1
	ENSSSCP00025032520.1
	ENSSSCP00070006818.1
	ENSSSCP00070006821.1

RefSeq Acc Id:	XP_020932432 ⟸ XM_021076773
- UniProtKB:	A0A4X1SV99 (UniProtKB/TrEMBL), A0A5G2RJX2 (UniProtKB/TrEMBL), A0A4X1SWJ8 (UniProtKB/TrEMBL), F1SMH3 (UniProtKB/TrEMBL), A0A8D0SIP0 (UniProtKB/TrEMBL), A0A8D0SW31 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNQSSEGCMKKIGSVNLDKLINDFSQIEKKMIEISGKNNILDMQLEKANCLLKVMQTKEVSIKE ECATLHDMIKGLQQTVEYHHNLKGENEQLKRNSDLMKEKLKSHEQEYKNNIAKLMNEMKIKEEG HKIEITKLYQDMQKKVELNEEKNKELIEKKEMEISELNAKLRTQEKEKQNEIVKLQLEFDAKLA RVQTKAKPYPDSTVLPHSIYRRKLQHLQEEKNKEIAILRNTIHDLEQRLSVSKDSQLKLVGKDS HFKRRRF hide sequence

Ensembl Acc Id:

ENSSSCP00000072265 ⟸ ENSSSCT00000082583

Ensembl Acc Id:

ENSSSCP00000017875 ⟸ ENSSSCT00000018371

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000016867	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00025054722	UniProtKB/TrEMBL
	ENSSSCG00070004386	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000018371.5	UniProtKB/TrEMBL
	ENSSSCT00000082583	ENTREZGENE
	ENSSSCT00000082583.2	UniProtKB/TrEMBL
	ENSSSCT00025074870.1	UniProtKB/TrEMBL
	ENSSSCT00025075012.1	UniProtKB/TrEMBL
	ENSSSCT00070008291.1	UniProtKB/TrEMBL
	ENSSSCT00070008294.1	UniProtKB/TrEMBL
InterPro	CCDC152	UniProtKB/TrEMBL
NCBI Gene	CCDC152	ENTREZGENE
PANTHER	COILED-COIL DOMAIN-CONTAINING PROTEIN 152	UniProtKB/TrEMBL
	PTHR35253	UniProtKB/TrEMBL
UniProt	A0A4X1SV99	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1SWJ8	ENTREZGENE, UniProtKB/TrEMBL
	A0A5G2RJX2	ENTREZGENE
	A0A8D0SIP0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0SW31	ENTREZGENE, UniProtKB/TrEMBL
	F1SMH3	ENTREZGENE
UniProt Secondary	A0A5G2RJX2	UniProtKB/TrEMBL
	F1SMH3	UniProtKB/TrEMBL
VGNC ID	VGNC:86264	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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