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Gene: ELL2 (elongation factor for RNA polymerase II 2) Sus scrofa

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Symbol:

ELL2

Name:

elongation factor for RNA polymerase II 2

RGD ID:

14121557

Description:

ENCODES a protein that exhibits translation elongation factor activity (inferred); INVOLVED IN snRNA transcription by RNA polymerase II (inferred); transcription by RNA polymerase II (inferred); transcription elongation by RNA polymerase II (inferred); PARTICIPATES IN RNA polymerase II transcription elongation pathway; ASSOCIATED WITH COVID-19 (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred); transcription elongation factor complex (inferred); INTERACTS WITH deoxynivalenol

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

RNA polymerase II elongation factor ELL2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	102,518,608 - 102,591,394 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	102,518,605 - 102,591,416 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	106,402,543 - 106,475,286 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

familial adenomatous polyposis 1 (ISO)

Hereditary Neoplastic Syndromes (ISO)

Neurodevelopmental Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

deoxynivalenol (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of transcription elongation by RNA polymerase II (IBA)

snRNA transcription by RNA polymerase II (IBA,IEA)

transcription by RNA polymerase II (IEA)

transcription elongation by RNA polymerase II (IEA)

translational elongation (IEA)

Cellular Component

nucleoplasm (IEA)

nucleus (IEA)

transcription elongation factor complex (IBA,IEA)

Molecular Function

cis-regulatory region sequence-specific DNA binding (IBA)

protein binding (ISO)

translation elongation factor activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

RNA polymerase II transcription elongation pathway (ISO)

References

Additional References at PubMed

PMID:14681463	PMID:17145712	PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

ELL2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	102,518,608 - 102,591,394 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	102,518,605 - 102,591,416 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	106,402,543 - 106,475,286 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ELL2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	95,885,098 - 95,961,851 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	95,885,098 - 95,961,851 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	95,220,802 - 95,297,555 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	95,246,558 - 95,323,531 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	95,248,856 - 95,323,531	NCBI
Celera	5	91,099,569 - 91,176,577 (-)	NCBI		Celera
Cytogenetic Map	5	q15	NCBI
HuRef	5	90,411,375 - 90,488,473 (-)	NCBI		HuRef
CHM1_1	5	94,653,611 - 94,730,421 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	96,386,338 - 96,463,172 (-)	NCBI		T2T-CHM13v2.0

Ell2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	75,855,603 - 75,920,480 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	75,854,876 - 75,920,483 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	75,707,484 - 75,772,361 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	75,706,757 - 75,772,364 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	75,844,932 - 75,909,809 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	76,172,805 - 76,238,363 (+)	NCBI		MGSCv36	mm8
Celera	13	78,027,359 - 78,092,187 (+)	NCBI		Celera
Cytogenetic Map	13	C1	NCBI
cM Map	13	40.93	NCBI

Ell2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	6,910,446 - 6,990,654 (+)	NCBI		GRCr8
mRatBN7.2	2	5,189,375 - 5,258,781 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	5,189,971 - 5,258,781 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	2	2,456,189 - 2,525,590 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	2,456,735 - 2,524,237 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	2,449,357 - 2,519,171 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	2,724,984 - 2,794,397 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	2,745,161 - 2,813,837 (+)	NCBI
Celera	2	1,661,941 - 1,730,615 (+)	NCBI		Celera
Cytogenetic Map	2	q11	NCBI

Ell2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955418	16,614,543 - 16,687,698 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955418	16,615,340 - 16,686,632 (+)	NCBI	ChiLan1.0	ChiLan1.0

ELL2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	19,406,161 - 19,494,138 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	17,571,196 - 17,645,446 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	19,387,443 - 19,464,150 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	19,533,442 - 19,610,079 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	19,533,442 - 19,610,079 (+)	Ensembl	panpan1.1		panPan2

ELL2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	13,673,653 - 13,746,604 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	13,673,785 - 13,746,316 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	15,012,972 - 15,085,860 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	13,553,675 - 13,626,554 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	13,553,644 - 13,624,274 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	13,516,603 - 13,589,440 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	13,513,473 - 13,586,474 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	13,713,306 - 13,786,243 (+)	NCBI		UU_Cfam_GSD_1.0

Ell2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	169,213,989 - 169,285,468 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936523	7,399,421 - 7,473,158 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936523	7,399,426 - 7,470,895 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ELL2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	89,758,483 - 89,835,773 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	89,762,251 - 89,835,433 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666049	38,404,258 - 38,481,671 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ell2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624743	14,515,727 - 14,583,805 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in ELL2
1233 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	4	23	3	2	5	14	12	23	3	6	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003123796	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK349229	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK393184	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK400524	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU462919	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01040655	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000054141 ⟹ ENSSSCP00000037643

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	102,518,608 - 102,591,394 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000102858 ⟹ ENSSSCP00000080686

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	102,522,050 - 102,591,390 (-)	Ensembl

RefSeq Acc Id:

XM_003123796 ⟹ XP_003123844

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	102,518,605 - 102,591,416 (-)	NCBI

Sequence:

show sequence

AGCCCGAGGTCTGGCTGCGCGCAGTATATGACAGTACGTCAGCAGCGGGATGGCCGTAGCTGTG
GCGGCGGCTGCAGAAGCCCGAGCAGCCGCGGCCGCAGTGGAGCCTAGAGCCCGAGCGGCGTCGG
CGGCGGCACCCGGGGGAGTTTAAGATGGCGGCAGGGGGGGCGGCGGGCCTGCGGGAGGAGCAGC
GCTACGGGCTGTCGTGCGGGAGACTTGGACAGGACAACATCACCGTACTGCATGTGAAGCTCAC
CGAGACGGCGATCCGCGCGCTCGAGACCTACCAGAGCCACAAGAATTTAATTCCATTTCGACCT
TCAATTCAGTTCCAAGGCCTGCAAGGGCTTGTCAAAATTCCTAAAAATGATCCCCCCAATGAAG
TGCATACCTTTAACTTCTATTTATCAAATGTGGGTAAAGACAACCCTCAGGGCAGCTTTGACTG
CATCCAGCAAACCTTCTCCAGCTCTGGAGCTTCCCAGCTCAATTGCCTGGGATTTATACAAGAT
AAAATTACAGTGTGTGCAACAAATGACTCGTATCAAATGACACGAGAAAGAATGACCCAGGCAG
AGGAGGAATCCCGCAACCGAAGCACAAAAGTTATCAAACCTGGTGGACCATATGTAGGGAAAAG
AGTGCAAATTCGGAAAGCACCTCAAGCTGTTTCAGATGCAGTGCCTGAGAGGAAAAGGTCAACC
CCCATGAACCCTGCAAATACAATTCGAAAGACACACGGCAGCAGCAGTGTTTCTCAGCGGCCAT
ATAGGGACAGGGTGATTCACTTACTGGCACTGAAGGCCTACAAGAAACCTGAGCTGCTGGCTCG
ACTACAGAAAGATGGTGTCAATCAGAAAGACAAGAACTCCCTCGGAGCAATTCTGCAACAGGTA
GCCAATCTGAATCCCAAGGACCTTTCATACACATTAAAGGATTATGTTTTTAAAGAGCTTCAGA
GAGACTGGCCTGGATACAATGAAATAGACAGACGGTCATTAGAGTCAGTGCTCTCCAGAAAACT
AAATTCATCTCAGAATGCTGCCAGCACCAGCCGTTCAGAATCTCCTGTTTGTTCTAGCAGAGAC
TCTGCATCTTCTCCTCAGAAACGGCTTTTAGATTCAGATTTCATTGATCCTTTAATGAATAAAA
AAGCTCGAATATCTCACCTGACAAATAGAGTGCCACCAACATTAAATGGTCATTTGAATCCCTC
CAGTGAAAAATCTGCTGCAGGCCCCCCGACGCCCCCTGCAGCCGCTGCCATCCCCACCCCTCCA
CCGCTGCCTTCAACCCACCTGCCTGTCTCCAATCCTCCTCAGACTGTAAATTCTAACTCCAATT
CCCCTAGCACTCCAGAAGGCCGGGGGACTCAAGACCTACCTGTTGACAGTTTTAGTCAAAACGG
TAGGATCTATGAGGACCAGCAAGACAAATATACCTCTAGGACTTCTCTGGAAACCTTACCCCCT
GGTTCAGTTCTACTAAAGTGTCCAAAGCCTTTGGAAGAAAACCATTCGTCTCACAAAAAGTCCA
AGAAGAAGTCTAAAAAACACAAGGAAAAGGACCAAATAAAAAAGCATGACATTGAAATGATTGA
GGAAAAGGAAGAAGACCTTAAAAGAGAAGAGGAAATTGCCAAGCTGAACAATTCCAGTCCAGAT
TCCAATGAAGGAGTTAAAGAGGGTTGCACTGCCTCCACCGAGCCTTCTTCAACAATTGAACTCC
CGGATTATTTGATAAAATATATTGCCATTGTCTCCTATGAGCAACGCCAGAATTACAAGGATGA
CTTCAATGCTGAGTATGATGAGTACAGGGCCTTGCATGCCAGGATGGAGACAGTGGCTAGAAGA
TTTATCAAACTGGACGCACAACGAAAGCGCCTTTCTCCGGGCTCAAAAGAGTATCAGAATGTTC
ATGAAGAAGTCTTACAGGAATATCAGAAGATAAAGCAGTCTAGTCCCAATTACCATGAAGAAAA
ATACAGGTGCGAGTATCTTCATAACAAGCTGGCTCACATCAAGAGACTAATAGGTGAATTTGAC
CAACAGCAAGCAGAGTCATGGCACTAGAACTCTGCTTGGACCAGAAGATGTGAATAAACTTAAG
CTTATTTATTTAAAATTCCAAATGAGTTGCTCTCAAATTCTAAAACATGAAACTTCGCCTGTTG
AAAGTTTCAGTATTAGTAAACTTGAGTTTTGTTTTTTGTTTTTTTTTTTTTTCTATTTTACTTT
GCTTCCTTGCATTTTTGAAGCTGCTTTTTTCTGGTCCTCTTTTCCCCCTTAAGACTTGTGTTTG
TCAATAGAAATAATTTTTTTTTAAGATATTGAAGATCCAGTGTCTATACTTCAAATCAATTTTT
TTCCTTAAAAAACTGTGTTTGTCATTAGAAATGATTTTTTTTTTTTTTTTTTTTTTTTTTAGAT
ATGGGGGATCCAGTGTCCACACTTAAGTTATGTGTTTAAAAAAAAGAAAAAAAAGTCATGTGCA
AGGTGAAATGCTTTTGGATAAACATAAGCCTATTTTCTGACCTTTCTTAATGCAAACTCTTTGC
CTTAAATGGTAGAATATTTAGAAATTTGCACAAAATACAAAAAAAAATTAAAACATTGTTTTGG
AGGGTTAAGAAATAGGTATATGAGTATGTGTGTGTGTGTGTATAGATCTATATACACATATGTA
TATAGGCTGACTTGATCTAGAACAGTAAATCCGCCCTGCAAGTTAACCCCCCATTGCAATGGTT
GCCTTAAGGTGTTTGCTAGTTGTGTACCTAGTGTGGTTTATCATTAGCTACACTGCTTCCCACT
TGATGAGAGCAATGGGAAGCACACTGTGGCCTACCAGCGTCTGAAAACGTGTGCTCGACCTGTA
TGTGTGCAGAGGTGGTGTGGGTGTGAGCGTGCATGGAGGAAAAAAAGCTGCTACTCTCAGTAGG
CCAAACGCTCAGGTGAAACAACTGACGAGTGTTACTGTAGGGTTTGTTTTGTTTTGTTTTGTTT
TTTCTGTCAAATTGCTACTTCTATTGTGGAAGACAAAAGCATTTCCATTTCAACAGTTTGTCAG
CTTTATTAATGTTGGGCAAAATTGATGTTATGAAAATGAAACAGATCTATAGTTTTGGGGCAAA
ATTATAAAATTAAACATGTAGGTAACCTATTTATATACTTCTATAAAGTATTTTTTGAAGAGAG
ATATGCAAAGAAGCTATTACCTACATGAAATGTATATTTAAAGATTTTTTTTTCATCCTGGGTG
CCAGGAGTATAAAAAAGAGCGGATATATTTAACCATAACATACTGTGATTCATCAAACAGCACA
AACTTTCATTTCATGGAGTTTATCTGTTGACGTTGATTTAAACTATCATTTGTTTTATCATGTG
GGAACATAAGTTATGTGGTCATAAGTATAAGGATTTTGAACTAATGTTGATTCAAGTTGTGTTG
TCATGTTGTATTGTTTTTTCCAAGTGCTGCCAGTTTAAAAGGGAAGCATTATGTTTACAAATAT
GTTTTGAAATGTTTGCCAAAATCTTGGTGGTATCTTAAATAAAGATGTTTGTCTCCAGCATCCA
AAAAAATAAATAAATAACTTTGTTGTGTATCGCTGTAAACCAGAAAATGTTGGTATCTAGAAAA
CCTGAGACAGCATGTGGATGAAACTTTCCCTTTGGAGTTCTTCTAAAACATTAACAGGAAAGAG
TAGATGATACAGTAAAAGTATGCTATCTCAAAAGACTGAAACAAGACCCAGTGCCCTAGAACTC
TGTAACGTTACTACAGAAATTTGATTTCTATGTAGCATGGACCTCCTAGGGAATTCGATTTTCT
TTTGGCATTGAGATCCCTGGTGCTCTTCCTTTTACCTCAGAATTGGTACAATCATTATTAAGTG
TTCACTGATTTCAAACTTTTAGTTGGAAAAACAAAATAGGAAAGGACACTTAACTGAGGATAAA
TATGATCCTCACATCATTATGGTGGAATTTCCAGAGGAACTTGTCTATAGGTACTGGTGTCATT
TCTTGGACATCGCAGCCTTTTAATCATCGCTAGTGTGCTGCTACTTGCTATGAGTGGTGTTTCT
CAAAAGCAAGGTGCTTGCACCACTTGCATATCCCAAATTGGAATCTCTAGGGATAGGGCCCACG
TATCTACATTTTCGTAAGTAATCCCCAAAGTGACTTTTGCGAGCTAAAGTGTGAAAACCACTAG
CTTGGAAGTAACACTAAACCTTTAGGTCTCTAAATTTCCATGCCTTGAAGTGAAATTGAACTAC
TGGCTTTTTTTTTAAAGCCCATCCCTTTCAGCAGGTGCAAATCACTTTCCCCCTCTACATCATA
TGAGGCACCCTCTCAATTGTTTCACTGCCAACTCTTATTTCAGAACTTGTTTACAAACAAGCCA
AGCCTTCCAGTTGGTTAGCTCTTAGCCCTTGGAGCTCCTACCCACCTACATCAGCACATCTTCT
GGTTTACAAATTGGGTAATAATGGAAGCTGGAGATGCTTTATGAAAATCCAGCATTGCACACCC
ATAGACTTGACCACCTACCTATAAAAAGCCTTAATTTAGATGTTCCTTGTGTACACTGGGAAGA
TCCTTGCAAAATGTGTATCTGTCAGTTGCAAATATGAGAGCTGTAAATCTCTGAATCTGCTATT
ACCTGAGGCTGCATCTCTTTTGAAAAATGGGCATGAGCCTATTAAAATATTTATAATCATTCTT
CATCTCCTACTGCAAGGTTTTTTAGAGTCTCTCAAATAACTGCTGCAGGAATGGGTGGCCACTT
AGTATCAGTTACTCTGGTAGAATTTATTTAGGTGTTTGTTTTTTGTTTTGTTTTTGAGAGAGAA
ATAGTAAGTGTAAATTAGCATTGTCAAAAATGAGTTGTTCTTAATTGTTCATCACATTTCATTA
AAATAATCTGAAGCACTCTTGAAGGTTTTTTTTTTTTTTACCAATACCCATAAATTTAACTCCA
GATTGAATGAACAGCTGGTTTAACATAAACCAAAAACAATATTAACTAGATGTGGTTTTATTTT
ATGTGAGGATTTCATGTCCTACCTTGTTGGTTATTTTTAGAGGGGTTAATTTTCAGTACTTAAG
TAGTTACAGTACTTGTTCTCACAAAAGTAATTGGTGTGGTCAGTTGATATCATTGATCCATGCA
TTGATTATCAAAATCCAGTATTAATTTTCCTTCATTTCCAACCTATCTTCTAAGCTTTAGAAAG
GTTTTCTTTTCCCTTAAAATATTTCACCTTATTCTGTACAGCAAATGTATATTTTCCTGTTTGA
AGCAAGATGTTGAAAGGAGGTTTAGACACAAATGGTCCATCAGTTCCAACACTCGGCTTGGTTG
CCTTACCCCTTCCATTAGTGCATCCTTTGCTTCTGGAACTTGGCTGAAATCTTCAGCCAAGCTC
ATTGTCTTTCTGGGAGTGTGAGTGTGGAGTCACATATGTGTGGTTTTTGCCTTTACTACTTTTG
AAGTTCTTACAGGTTATGACTTGCCTAAGTGTTACTAAATCCTTTTCTTGTGTCCTGGATGGGG
AAAAGGTATAGCCAGCGCTTTGAGAGGGACATTTTGGGAAAAGATATTAACTGACACAACTAAA
TGAAGGCAACAGAAGATGTTATCAATGCTCTTTGTAACCTGAAAACTGAATAAGGCTCTGAGGC
TCATTCAAAATATTTTGAAGTGTTTAAAAATATGTATGTATATATATACATATATATACATATA
TATAATATACGCTGTTTCTCAGCTGTTCCACCCAAACCATGTTAGGAAGGTAAAATGTCACGGG
GACTTTTCAGTTGTTAACTGAGCTCAGCAGCTATGGTGGCCCATGTTGTTCTACATCAATTTCA
GTTCAATAAAAATGTTAACTTTGCAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003123844	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000037643.3
	ENSSSCP00000080686
	ENSSSCP00000080686.1
	ENSSSCP00015016365.1
	ENSSSCP00070015407.1

RefSeq Acc Id:

XP_003123844 ⟸ XM_003123796

- UniProtKB:

A0A480JTG5 (UniProtKB/TrEMBL), A0A8D0NBL7 (UniProtKB/TrEMBL), A0A4X1TK81 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAGGAAGLREEQRYGLSCGRLGQDNITVLHVKLTETAIRALETYQSHKNLIPFRPSIQFQGLQ
GLVKIPKNDPPNEVHTFNFYLSNVGKDNPQGSFDCIQQTFSSSGASQLNCLGFIQDKITVCATN
DSYQMTRERMTQAEEESRNRSTKVIKPGGPYVGKRVQIRKAPQAVSDAVPERKRSTPMNPANTI
RKTHGSSSVSQRPYRDRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANLNPKDL
SYTLKDYVFKELQRDWPGYNEIDRRSLESVLSRKLNSSQNAASTSRSESPVCSSRDSASSPQKR
LLDSDFIDPLMNKKARISHLTNRVPPTLNGHLNPSSEKSAAGPPTPPAAAAIPTPPPLPSTHLP
VSNPPQTVNSNSNSPSTPEGRGTQDLPVDSFSQNGRIYEDQQDKYTSRTSLETLPPGSVLLKCP
KPLEENHSSHKKSKKKSKKHKEKDQIKKHDIEMIEEKEEDLKREEEIAKLNNSSPDSNEGVKEG
CTASTEPSSTIELPDYLIKYIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQR
KRLSPGSKEYQNVHEEVLQEYQKIKQSSPNYHEEKYRCEYLHNKLAHIKRLIGEFDQQQAESWH

hide sequence

Ensembl Acc Id:

ENSSSCP00000037643 ⟸ ENSSSCT00000054141

Ensembl Acc Id:

ENSSSCP00000080686 ⟸ ENSSSCT00000102858

Protein Domains

OCEL

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000014168	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015031162	UniProtKB/TrEMBL
	ENSSSCG00070009554	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000054141.3	UniProtKB/TrEMBL
	ENSSSCT00000102858	ENTREZGENE
	ENSSSCT00000102858.1	UniProtKB/TrEMBL
	ENSSSCT00015041402.1	UniProtKB/TrEMBL
	ENSSSCT00070018539.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.2670	UniProtKB/TrEMBL
	6.10.140.340	UniProtKB/TrEMBL
InterPro	E3_ELL-like	UniProtKB/TrEMBL
	ELL/occludin	UniProtKB/TrEMBL
	ELL_N	UniProtKB/TrEMBL
	Occludin_ELL	UniProtKB/TrEMBL
	WH_DNA-bd_sf	UniProtKB/TrEMBL
KEGG Report	ssc:100523777	UniProtKB/TrEMBL
NCBI Gene	ELL2	ENTREZGENE
PANTHER	PTHR23288	UniProtKB/TrEMBL
	RNA POLYMERASE II ELONGATION FACTOR ELL2	UniProtKB/TrEMBL
Pfam	ELL	UniProtKB/TrEMBL
	Occludin_ELL	UniProtKB/TrEMBL
PROSITE	OCEL	UniProtKB/TrEMBL
Superfamily-SCOP	occludin/ELL-like	UniProtKB/TrEMBL
	SSF46785	UniProtKB/TrEMBL
UniProt	A0A287A147_PIG	UniProtKB/TrEMBL
	A0A480JTG5	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1TK81	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0NBL7	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:87649	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

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Imported Disease Annotations - ClinVar

RGD Manual Annotations