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Gene: LOC102166000 (spermatogenesis-associated protein 31A6-like) Sus scrofa

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Symbol:

LOC102166000

Name:

spermatogenesis-associated protein 31A6-like

RGD ID:

14121279

Description:

INVOLVED IN cell differentiation (inferred); spermatogenesis (inferred); FOUND IN membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

SPATA31 subfamily A, member 6; SPATA31A6; spermatogenesis-associated protein 31A6

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	1	195,848,865 - 195,855,281 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	218,133,403 - 218,139,913 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA)

spermatogenesis (IEA)

Cellular Component

membrane (IEA)

References

Genomics

Comparative Map Data

LOC102166000
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	1	195,848,865 - 195,855,281 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	218,133,403 - 218,139,913 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SPATA31E1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	87,882,877 - 87,888,903 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	87,882,877 - 87,888,903 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	90,497,792 - 90,503,818 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	89,687,592 - 89,693,634 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	87,727,325 - 87,733,366	NCBI
Celera	9	61,066,984 - 61,073,026 (+)	NCBI		Celera
Cytogenetic Map	9	q22.1	NCBI
HuRef	9	60,320,898 - 60,326,940 (+)	NCBI		HuRef
CHM1_1	9	90,645,791 - 90,651,833 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	100,036,904 - 100,042,930 (+)	NCBI		T2T-CHM13v2.0

Spata31e1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	49,938,173 - 49,943,728 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	49,938,241 - 49,952,477 (-)	Ensembl		GRCm39 Ensembl
GRCm38	13	49,783,969 - 49,790,252 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	49,784,765 - 49,799,001 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	49,880,134 - 49,885,569 (-)	MERGE	GRCm37	MGSCv37	mm9	NCBIm37
Celera	13	50,874,609 - 50,880,263 (-)	NCBI		Celera
Cytogenetic Map	13	A5	NCBI

Spata31e1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	38,594,738 - 38,600,395 (-)	NCBI		GRCr8
mRatBN7.2	9	31,098,557 - 31,104,212 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	31,098,260 - 31,104,196 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	9	35,289,422 - 35,295,479 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	35,289,443 - 35,295,041 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	34,098,837 - 34,104,860 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	9	28,565,043 - 28,570,937 (-)	NCBI		Celera
Cytogenetic Map	9	q21	NCBI

SPATA31E1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	51,567,637 - 51,573,741 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	51,570,028 - 51,576,132 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	58,977,949 - 58,984,053 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	87,029,053 - 87,034,983 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	87,029,053 - 87,034,983 (+)	Ensembl	panpan1.1		panPan2

LOC102155374
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	94,097,900 - 94,103,836 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	94,540,712 - 94,546,642 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	94,690,182 - 94,696,112 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	1	94,321,054 - 94,326,983 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	94,046,052 - 94,051,982 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	94,808,665 - 94,814,595 (-)	NCBI		UU_Cfam_GSD_1.0

SPATA31E1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	102,642,087 - 102,644,541 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666038	90,901,443 - 90,907,417 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in LOC102166000
62 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021085060	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_021085060 ⟹ XP_020940719

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	1	195,848,865 - 195,855,281 (+)	NCBI

Sequence:

show sequence

ATGGAGAATCTCTTTGATTTGAAAAGCGTTATTGAGACTTGGCTGACATCCAGCCAGACGTCCT
GGGTGGTTGACACCATCCTCGCATTCCTGTGTGGACTGGGGATCTTCCTCCTGTTACTTCCTTG
CTTCCAGAGTAATCCATCCTTACCACCATCTAGAAAACTTAGAAACAGCAGGAAGTGGACTCTC
CTGAGTTGGGAGATAGGAACTTCAGCTTGCAGAGATTGCCTGAAAGAACTGGAGGAGACTCATA
GCCTGGTTTCACTTCTGCAAAGCCACCTGGGGAGGCTCCCTGACAAGGGAAGCTTTCATCTGCT
CTCATGTCAAGAAACCCCTGGTGAGACGTGTGAAGCAGTGCCTGCTGGAGTCTGCCAGCCTTGT
GGGGAGCCTGTAGAAGATGCTGCTCCTGCCATACCCCCATTGGCTCCTCTGAGCAAGCACCCTC
CACCACTGGCCTCCACCCTTTTACCAGGCCCGACGACCTCCTCAGCATCTGTTCATTCACACAC
ATCTCTGAATGCCTCTCAGCCACCAGAGCCTTCTGTTCCCCTGGCCAGCCTTTCACCCTGGCCA
CTTGATCTTTCCTCTCCCCCACCATGTCCACCTGATTCAGAGGCTTGCCCTCCACCTCCAACAG
CCTCCTCTGCCCCCACACCACAAGATTCTACTCCAACTCTTACTCAGGATGATCCCTCAATGGC
ACTACCGCTGGGCACTGTTCCACAGAACTTATCTCCACACAACCCTGGGTCAACATCTCTCGCC
CCAGCCATCTCAGGCTTTGGTCGCTCAGGTTGTCCCCCTTCAGCTCTGTCCCGGTGGCAGGCAG
CAGCCAAAGCCTTGTGCCTCTCAAGATCATCACAGGGAAAGTCCCAGGAAAAGCACCTTTCCTA
CCACCCACCAGACGCCTCATTCTCAGTAGGCCCCTCAGACAGAGAGATGGAGGCTAGTAGCCCC
TCTTTGCTCAGCTCTGATGACCAGAAGCTCCTAGAGATACAAATGACAAAGACAGTCGAGATCA
AGATTTGGAAGGAGAAAGAAAAAGATGGATCAAATTTAAAACAAATGAGCCCAGACTGCCACCT
GGATTCCTTGGGGAGTATGTTGAAAGCACTGGGTGCTGATCAAAACACCACAATTGCCCAAACT
TTCTGGAACACAAAAGACAAACCAGAGCAGCTGCCTTGTCCTCAGCAGCTCTCATATCCCAACC
ATCTACAGCAGGAATATAACCAGCTTTTCTGGGGTCTCCCTTCTTTGCACAGTGAATCCTTGGT
GGCTACTGCCTGGATCTCTGAGAGCCCTTCAGCACCCCAATCTCCTTCTTTCTTATTCAACAGA
ATTCCAAACGCCAGCCCAGTTCAAATGCAAGCTAAAATATTTCCACTGCTTTCCCAGTTCCAGC
CCCTATCCCGTCTGGAGTTCCAATCTCAACCTTTTATTCCAACAATACCTCAATTCCAGCTCAC
ACCTCTGGCTCAGGTCCAAACACAGGCCCCGCTCAAACCTTCTCTCCCAATTGAAACACATTCT
TCTCCACCCCAGATTAGAGCCTGTGGAATACGTTGCCCTTTAGCCCCGAATAAGCCACAATCTC
TCACTCCAACTGAGATTCCACATTCAGAACAGTCCTTGTTGCTGAAGCAACTAGAAAATGCATG
GGATTTATCCTCTGAGGTCAAAAGATCTCAGGAAGTCTCTAGTGTCTTCACGTCCAAATTTCCT
GAGGACAGCTGGGTAGGCTCCATCCTTCCTGAGAATTTTCCAATCAGTCCTGAGCTCCGGAAAC
AACTGGAACAACACCTCCAAAAATGGCTCATCCAACACCGGTGGGAGCTTCCCCAAAGGATCCA
AGAGTCTTTAGAGATAAGTCAGCTTCAAGAAGAATTTCCAAGGACACGACAAGCAAAGGCCAAG
CATGGACCCTCACGGCCCTCTTCATTTATAGGTGAAAGCAGCAAGGATGCACAGAAGGTGGGGT
TCCGGCGAAGCCAGGACCTGGGTAAGGGCCTGGGGCATATTCTGGGGAAGGTCCCAAAAGATCT
GTCTGGGAGCTCAGAAAGCTCCCTAGTGAAATTTCAGGAGGAGAATCCTGAGGAGTCAGAAAGT
GACTTGAGTCTCCTGAAGAATGATTTAGGAATTAATTTACTAAGGAGCTTAGACAAGGATCTAG
AAAAAATCCTGAAAGGCCATTTGGTCAGGAAGCTGGGAAAGGTTGCCAAGGATTTGATTCCTAA
GGATGTGAATCAATCCCGGCTCACTGTCAGTCATGCTTCTCTCAAGTCTGACACTCACATGGAA
ACCAGGAATCTGGGAATCCTGAAGAGTTGGGCACCCTGTGTGAACACCTCCCATAGGGTTTCCT
TCCTTGATCCAGACACTCGAGATGGGCTAGAAGCACATATCATAAGGTTTCGGGTAAAGCATAG
GTGGGGCTTACCCCTCAAGGTCCTCAAGCCCATAAATCTCTTTAAGTTGAAAAAAGCTCAACCC
TCACCCATTCGGCAGTTTTCCTTTTGCCCCTCAGCCACCTATGTATCTGAGGCCCGTTCAACAG
TCAGATTTGCAGAGTTCCTTGGAAAGCCCCCTCAGGCCCATTCAAGGGAGAGGGTGATAACAAA
AGAGTCAGCTCCCACCCTGGTGAGGTCTCTCCTTGGCCCCTCACCTGTGAGTGAGGAAGCCCAG
AGGGTCCTGGGAAGGATCCCAGCTAGTGAGTACCATGGGCCCTCCAAGGCTTCTCTGACTGGAC
GGGAGGCCAGGCCACCTTCTCGGTCCCTCACAGTCAGCCTTATGGGCAGAACCTGGAAGAGCGA
GACTGTGGAGTGGGCCAAGAGGGACAGCCTAGAGCCACATTCAAGTTCAGCATTGGCCTGGAAT
GAGCCAAGAGAAGAGAGGGATTGCCAGGCTTCACAAGACACCAGCCAGGGGATACCAATTCTGG
AAGCGAACTTAGGAATGCAGTCTTTGAGAGCTGAAGAGGCCAGGGAGGCAGTGGAGCCTAAGGA
GTCCTCTGCTCTTAAACCACAATCTAGAGTTATCTTGGGAACCAAAATGCTGACAAAATGCCAA
ACCACAAATGTACACATGACGAGTTTAAGGGCTCCAGGAACCAGTAAAATCTCCCTGCTCCCTA
GAATGTCTGCTTTCCAACATCCAGGTGAGCCATGCCTTAACACAGAGGTCGCTCATGAGTTTAA
GTCCAAAGTGAAGCTACAGTCAGATAACCAGCTTCAAGGCTGTCCCAAACACATGTTTCTTGCT
GCAAAAAACTTGTCTTCTCGGGTGTCCCAATACCCTCCCCCAAAAGTGCCCACTGGAGATAGGT
TAGCTTCCCAGGCATTAAGTGGACCCATGGCAGCCCCAAGGAGCAGGCTAGGGCAGCAGGAGCC
CCAAACTTCAAAACTTCAGGACTCATGGAAGAGCCAGAGCAAGATGATTGCCACTATTTCTAAG
AGAAGGGACTGTAGGGGACCTAAACCAGGAGAACATGAAGAAAGTTTTAAAGAATTAGGGACTT
CTCAAGCTGGAAATATGAGCCACCCTGCCCAAGGCAGGGGAATAATAGGCTCTGTTGGGAGCAA
ATGTCCCCATCCCATGCCGGAGAAGAAACAGGGTCCTCCAGAAAGCCCCTTCCGAAAAAGAATG
AGGCTATTGTTTGAGTGGATTTTCCCCAGTAAAAAAGTCAAAAGTCAGGACGCTTTGCAAAAAG
GCAAGCCTGTCTCAGCTATTACTGAAAGCCAAGGACCAATCAAAAGCAAATCTATCTTGAAGAG
TGAGACTGCTGAGGCTCAGGCACTCATGACAGCTGTTGGTCATATTCTAGAAGAAAAAATGGCA
ATTCACCATGGACATCATGCCACAAAGTTAAATGACCACAGACAGGAACTCCAAGCTTCAGTAT
GTGGGTGTTCCTGCTACCACAAGTTTCTCTTCTACCCAGAGCAAGGGAAAATGGTGGGTTATAG
AGCCTGCAGTCACCAAGCCAACTTCAAGGACCAGAGTTGTTCTTTCAGGGAAAGGGAAGTCAGA
CATCAACAGTCCTCAAAAAGTGTAAGATTCAACGATGAGCCGACAGGCCTTAGGCAACCCCCCA
CCTTATCCCCCAAGAAGACTTTGTCTCCAGTCAGTCCCTGCCAGCATGGGTCAAGGATGCCAGG
TGCCCTAGCCCGCCATCAACACTGTCCAAGGCACTGTTGTCTTCGGGGAGGTGTCTTGCCTAGC
AAACCATAAATTGCTTCTCTAGTCTTTCCTTTAGTAGGAAAACATGTCTCCAAGAAAAAATTTA
GTTCATGTAAAGAAAATGTTTTTCTCATTAATTCATCCAAGGTGTGTAATGTTTCCCAATACAT
ATACA

hide sequence

Protein Sequences


Protein RefSeqs	XP_020940719	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00070052200.1

RefSeq Acc Id:

XP_020940719 ⟸ XM_021085060

- UniProtKB:

A0A4X1W6Z4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MENLFDLKSVIETWLTSSQTSWVVDTILAFLCGLGIFLLLLPCFQSNPSLPPSRKLRNSRKWTL
LSWEIGTSACRDCLKELEETHSLVSLLQSHLGRLPDKGSFHLLSCQETPGETCEAVPAGVCQPC
GEPVEDAAPAIPPLAPLSKHPPPLASTLLPGPTTSSASVHSHTSLNASQPPEPSVPLASLSPWP
LDLSSPPPCPPDSEACPPPPTASSAPTPQDSTPTLTQDDPSMALPLGTVPQNLSPHNPGSTSLA
PAISGFGRSGCPPSALSRWQAAAKALCLSRSSQGKSQEKHLSYHPPDASFSVGPSDREMEASSP
SLLSSDDQKLLEIQMTKTVEIKIWKEKEKDGSNLKQMSPDCHLDSLGSMLKALGADQNTTIAQT
FWNTKDKPEQLPCPQQLSYPNHLQQEYNQLFWGLPSLHSESLVATAWISESPSAPQSPSFLFNR
IPNASPVQMQAKIFPLLSQFQPLSRLEFQSQPFIPTIPQFQLTPLAQVQTQAPLKPSLPIETHS
SPPQIRACGIRCPLAPNKPQSLTPTEIPHSEQSLLLKQLENAWDLSSEVKRSQEVSSVFTSKFP
EDSWVGSILPENFPISPELRKQLEQHLQKWLIQHRWELPQRIQESLEISQLQEEFPRTRQAKAK
HGPSRPSSFIGESSKDAQKVGFRRSQDLGKGLGHILGKVPKDLSGSSESSLVKFQEENPEESES
DLSLLKNDLGINLLRSLDKDLEKILKGHLVRKLGKVAKDLIPKDVNQSRLTVSHASLKSDTHME
TRNLGILKSWAPCVNTSHRVSFLDPDTRDGLEAHIIRFRVKHRWGLPLKVLKPINLFKLKKAQP
SPIRQFSFCPSATYVSEARSTVRFAEFLGKPPQAHSRERVITKESAPTLVRSLLGPSPVSEEAQ
RVLGRIPASEYHGPSKASLTGREARPPSRSLTVSLMGRTWKSETVEWAKRDSLEPHSSSALAWN
EPREERDCQASQDTSQGIPILEANLGMQSLRAEEAREAVEPKESSALKPQSRVILGTKMLTKCQ
TTNVHMTSLRAPGTSKISLLPRMSAFQHPGEPCLNTEVAHEFKSKVKLQSDNQLQGCPKHMFLA
AKNLSSRVSQYPPPKVPTGDRLASQALSGPMAAPRSRLGQQEPQTSKLQDSWKSQSKMIATISK
RRDCRGPKPGEHEESFKELGTSQAGNMSHPAQGRGIIGSVGSKCPHPMPEKKQGPPESPFRKRM
RLLFEWIFPSKKVKSQDALQKGKPVSAITESQGPIKSKSILKSETAEAQALMTAVGHILEEKMA
IHHGHHATKLNDHRQELQASVCGCSCYHKFLFYPEQGKMVGYRACSHQANFKDQSCSFREREVR
HQQSSKSVRFNDEPTGLRQPPTLSPKKTLSPVSPCQHGSRMPGALARHQHCPRHCCLRGGVLPS
KP

hide sequence

Protein Domains

SPATA31 SPATA31F3-like

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00070030430	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00070061248.1	UniProtKB/TrEMBL
InterPro	SPATA31	UniProtKB/TrEMBL
	SPATA31F3-like	UniProtKB/TrEMBL
NCBI Gene	LOC102166000	ENTREZGENE
PANTHER	ACROSOME-SPECIFIC PROTEIN	UniProtKB/TrEMBL
	SPERMATOGENESIS-ASSOCIATED PROTEIN 31A1-RELATED	UniProtKB/TrEMBL
Pfam	DUF4599	UniProtKB/TrEMBL
	FAM75	UniProtKB/TrEMBL
UniProt	A0A4X1W6Z4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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