LOC102155374 (spermatogenesis-associated protein 31E1) - Rat Genome Database

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Gene: LOC102155374 (spermatogenesis-associated protein 31E1) Canis lupus familiaris
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Symbol: LOC102155374
Name: spermatogenesis-associated protein 31E1
RGD ID: 12322624
Description: INVOLVED IN cell differentiation (inferred); spermatogenesis (inferred); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SPATA31 subfamily E, member 1; SPATA31E1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1194,097,900 - 94,103,836 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha194,540,712 - 94,546,642 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0194,690,182 - 94,696,112 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1194,321,054 - 94,326,983 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0194,046,052 - 94,051,982 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0194,808,665 - 94,814,595 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

References

Genomics

Comparative Map Data
LOC102155374
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1194,097,900 - 94,103,836 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha194,540,712 - 94,546,642 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0194,690,182 - 94,696,112 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1194,321,054 - 94,326,983 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0194,046,052 - 94,051,982 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0194,808,665 - 94,814,595 (-)NCBIUU_Cfam_GSD_1.0
SPATA31E1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38987,882,877 - 87,888,903 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl987,882,877 - 87,888,903 (+)EnsemblGRCh38hg38GRCh38
GRCh37990,497,792 - 90,503,818 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36989,687,592 - 89,693,634 (+)NCBINCBI36Build 36hg18NCBI36
Build 34987,727,325 - 87,733,366NCBI
Celera961,066,984 - 61,073,026 (+)NCBICelera
Cytogenetic Map9q22.1NCBI
HuRef960,320,898 - 60,326,940 (+)NCBIHuRef
CHM1_1990,645,791 - 90,651,833 (+)NCBICHM1_1
T2T-CHM13v2.09100,036,904 - 100,042,930 (+)NCBIT2T-CHM13v2.0
Spata31e1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391349,938,173 - 49,943,728 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1349,938,241 - 49,952,477 (-)EnsemblGRCm39 Ensembl
GRCm381349,783,969 - 49,790,252 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1349,784,765 - 49,799,001 (-)EnsemblGRCm38mm10GRCm38
MGSCv371349,880,134 - 49,885,569 (-)MERGEGRCm37MGSCv37mm9NCBIm37
Celera1350,874,609 - 50,880,263 (-)NCBICelera
Cytogenetic Map13A5NCBI
Spata31e1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8938,594,738 - 38,600,395 (-)NCBIGRCr8
mRatBN7.2931,098,557 - 31,104,212 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl931,098,260 - 31,104,196 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0935,289,422 - 35,295,479 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl935,289,443 - 35,295,041 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0934,098,837 - 34,104,860 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera928,565,043 - 28,570,937 (-)NCBICelera
Cytogenetic Map9q21NCBI
SPATA31E1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21151,567,637 - 51,573,741 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1951,570,028 - 51,576,132 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0958,977,949 - 58,984,053 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1987,029,053 - 87,034,983 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl987,029,053 - 87,034,983 (+)Ensemblpanpan1.1panPan2
LOC102166000
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11195,848,865 - 195,855,281 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21218,133,403 - 218,139,913 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SPATA31E1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112102,642,087 - 102,644,541 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603890,901,443 - 90,907,417 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in LOC102155374
118 total Variants

Expression

RNA-SEQ Expression

adipose tissue
circulatory system
ectoderm
hemolymphoid system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
2 1 2 2 1 4 4 1 8

Sequence


RefSeq Acc Id: XM_005615947   ⟹   XP_005616004
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1194,097,900 - 94,103,836 (-)NCBI
Dog10K_Boxer_Tasha194,540,712 - 94,546,642 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038466581   ⟹   XP_038322509
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1194,321,054 - 94,326,983 (-)NCBI
RefSeq Acc Id: XM_038527280   ⟹   XP_038383208
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0194,808,665 - 94,814,595 (-)NCBI
RefSeq Acc Id: XM_038591587   ⟹   XP_038447515
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0194,046,052 - 94,051,982 (-)NCBI
RefSeq Acc Id: XM_038655385   ⟹   XP_038511313
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0194,690,182 - 94,696,112 (-)NCBI
RefSeq Acc Id: XP_005616004   ⟸   XM_005615947
- UniProtKB: A0A8I3RZJ9 (UniProtKB/TrEMBL),   A0A8P0SVR0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038322509   ⟸   XM_038466581
RefSeq Acc Id: XP_038447515   ⟸   XM_038591587
RefSeq Acc Id: XP_038511313   ⟸   XM_038655385
- UniProtKB: A0A8I3RZJ9 (UniProtKB/TrEMBL),   A0A8P0SVR0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038383208   ⟸   XM_038527280
Protein Domains
SPATA31   SPATA31F3-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000002137 UniProtKB/TrEMBL
  ENSCAFG00845016939 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000049580.4 UniProtKB/TrEMBL
  ENSCAFT00845029997 ENTREZGENE
  ENSCAFT00845029997.1 UniProtKB/TrEMBL
InterPro DUF4599 UniProtKB/TrEMBL
  SPATA31/FAM205 UniProtKB/TrEMBL
NCBI Gene LOC102155374 ENTREZGENE
PANTHER ACROSOME-SPECIFIC PROTEIN UniProtKB/TrEMBL
  SPERMATOGENESIS-ASSOCIATED PROTEIN 31A1-RELATED UniProtKB/TrEMBL
Pfam DUF4599 UniProtKB/TrEMBL
  FAM75 UniProtKB/TrEMBL
UniProt A0A8I3RZJ9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SVR0 ENTREZGENE, UniProtKB/TrEMBL