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Gene: LOC100521825 (olfactory receptor 6B2) Sus scrofa

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Symbol:

LOC100521825

Name:

olfactory receptor 6B2

RGD ID:

14103150

Description:

ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); ASSOCIATED WITH Bethlem Myopathy 1A (ortholog); chromosome 2q37 deletion syndrome (ortholog); D-2-hydroxyglutaric aciduria 1 (ortholog); FOUND IN cytosol (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	15	139,040,721 - 139,041,685 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	153,834,269 - 153,835,216 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bethlem Myopathy 1A (ISO)

chromosome 2q37 deletion syndrome (ISO)

D-2-hydroxyglutaric aciduria 1 (ISO)

hereditary spastic paraplegia 30 (ISO)

intellectual disability (ISO)

primary hyperoxaluria type 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

detection of chemical stimulus involved in sensory perception of smell (IEA)

G protein-coupled receptor signaling pathway (IEA)

sensory perception of smell (IEA)

Cellular Component

cytosol (ISO)

membrane (IEA)

plasma membrane (IEA)

Molecular Function

G protein-coupled receptor activity (IEA)

odorant binding (IBA)

olfactory receptor activity (IBA,IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

LOC100521825
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	15	139,040,721 - 139,041,685 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	153,834,269 - 153,835,216 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

OR6B2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	240,029,491 - 240,030,429 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	240,029,491 - 240,030,429 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	240,968,908 - 240,969,846 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	240,617,581 - 240,618,519 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	240,688,897 - 240,689,836	NCBI
Celera	2	234,642,436 - 234,643,374 (-)	NCBI		Celera
Cytogenetic Map	2	q37.3	NCBI
HuRef	2	232,726,858 - 232,727,796 (-)	NCBI		HuRef
CHM1_1	2	240,974,960 - 240,975,898 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	240,522,204 - 240,523,142 (-)	NCBI		T2T-CHM13v2.0

Or6b2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	92,407,403 - 92,408,341 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	92,403,647 - 92,412,835 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	92,479,681 - 92,480,619 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	92,475,925 - 92,485,113 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	94,376,258 - 94,377,196 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	94,310,087 - 94,311,025 (-)	NCBI		MGSCv36	mm8
Celera	1	95,419,041 - 95,419,979 (-)	NCBI		Celera
Cytogenetic Map	1	D	NCBI
cM Map	1	46.43	NCBI

LOC100969138
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	142,678,429 - 142,688,810 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	142,692,947 - 142,695,879 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	127,273,084 - 127,276,009 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	246,089,692 - 246,093,632 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	246,090,216 - 246,091,154 (-)	Ensembl	panpan1.1		panPan2

OR6B2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	49,989,139 - 49,990,077 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	49,989,139 - 49,990,077 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	50,485,611 - 50,486,549 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	50,393,111 - 50,394,049 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	50,393,111 - 50,394,049 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	50,264,628 - 50,265,566 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	50,041,936 - 50,042,874 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	50,273,311 - 50,274,249 (-)	NCBI		UU_Cfam_GSD_1.0

LOC101961398
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	191,806,903 - 191,811,375 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936745	1,402,693 - 1,412,517 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

Variants

Variants in LOC100521825
36 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003133786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000101	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU929476	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_003133786 ⟹ XP_003133834

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	15	139,040,721 - 139,041,685 (-)	NCBI

Sequence:

show sequence

ATGAGGGGCGAGAACGGGACCCAGGTGGGCGCCTTCGTGCTGCTGGGCTTCCCCACGGCCCCCG
GGCTGCAGCGCCTGCTCTTCCTGCTCTTCCTGCTCATCTACCTCCTGGTGCTGCTGGAGAACCT
GGCCATCATCCTCACCGTCTGGAGGAGCCTCTCCCTGCACAGGCCCATGTACTGCTTTCTGGGC
TGCATGTCGGCCCTGGAGCTCTGGTACGTGTCTGACATCATCCCCAAGATGCTGGGCGGCTTCC
TGCTGCAGCGCTGGCGCATCTCCTTCGCGGGCTGCATGACGCAGCTCTACTTCTTCAGCGCCCT
CATGTGCACCGAGTGCGTGCTGCTGGCCTCCATGGCCTACGACCGCTACGTGGCCATCTGCCAC
CCCCTGCGCTACCCGGCCATCATGACCGCGGGGCTGTGCGCCCGCCTGGTGGCCTTCTCCTTTG
CCAGCGGCTTCTCCATCTCCGTGATCAAGGTCTACTTCATCTCCAGCGCCACCTTCTGTGGCTC
CAACGTCCTGAACCACTTCTTCTGCGACATCTCGCCCATCCTCAGACTGGCCTGCACGGACTTC
TCGACGGCCGAGCTGGTGGACTTCGTCCTGGCCTTCATCATCCTGGTGTTCCCGCTCTCGGCCA
CCGCGCTCTCCTACGCGCACATCGTCCTGGCCGTCCTGCGCACGCCCTCGGCCACGGGCCGCCG
GCGCGCCTTCTCCACCTGCGCCTCCCACCTCACCGTGGTCGTCATCTTCTATATGGCCTTGATC
TTCATGTATGTCCGGCCCCAGGCCATCGACTCGCGGAGCTCCAACAAGCTCATCTCCGCAGTTT
ACACCGTGCTCACTCCAATCGTCAACCCCTTGATCTACTGTCTGAGGAACAAAGAATTCAAGGA
TGCTTTGCGGAAGGCTCTCAGCTTAGGTCAGTCTTCACTGCAGCACAACTAAATATCCTAAAAT
CTAAT

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Protein Sequences


Protein RefSeqs	XP_003133834	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000042706
	ENSSSCP00000042706.3
	ENSSSCP00030031094.1
	ENSSSCP00035010223.1
	ENSSSCP00040033784.1
	ENSSSCP00045015242.1
	ENSSSCP00055041141.1
	ENSSSCP00070008994.1

RefSeq Acc Id:

XP_003133834 ⟸ XM_003133786

- UniProtKB:

A0A287AFS5 (UniProtKB/TrEMBL), A0A8D1H8V4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MRGENGTQVGAFVLLGFPTAPGLQRLLFLLFLLIYLLVLLENLAIILTVWRSLSLHRPMYCFLG
CMSALELWYVSDIIPKMLGGFLLQRWRISFAGCMTQLYFFSALMCTECVLLASMAYDRYVAICH
PLRYPAIMTAGLCARLVAFSFASGFSISVIKVYFISSATFCGSNVLNHFFCDISPILRLACTDF
STAELVDFVLAFIILVFPLSATALSYAHIVLAVLRTPSATGRRRAFSTCASHLTVVVIFYMALI
FMYVRPQAIDSRSSNKLISAVYTVLTPIVNPLIYCLRNKEFKDALRKALSLGQSSLQHN

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Protein Domains

G-protein coupled receptors family 1 profile

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000047509	ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00030048659	UniProtKB/TrEMBL
	ENSSSCG00035020618	UniProtKB/TrEMBL
	ENSSSCG00040057787	UniProtKB/TrEMBL
	ENSSSCG00045012985	UniProtKB/TrEMBL
	ENSSSCG00055026068	UniProtKB/TrEMBL
	ENSSSCG00070005757	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000063957	ENTREZGENE
	ENSSSCT00000063957.3	UniProtKB/TrEMBL
	ENSSSCT00030067927.1	UniProtKB/TrEMBL
	ENSSSCT00035026807.1	UniProtKB/TrEMBL
	ENSSSCT00040078352.1	UniProtKB/TrEMBL
	ENSSSCT00045022117.1	UniProtKB/TrEMBL
	ENSSSCT00055051470.1	UniProtKB/TrEMBL
	ENSSSCT00070010914.1	UniProtKB/TrEMBL
Gene3D-CATH	Rhodopsin 7-helix transmembrane proteins	UniProtKB/TrEMBL
InterPro	GPCR_Rhodpsn	UniProtKB/TrEMBL
	GPCR_Rhodpsn_7TM	UniProtKB/TrEMBL
	Olfact_rcpt	UniProtKB/TrEMBL
	Olfactory_GPCR1	UniProtKB/TrEMBL
NCBI Gene	LOC100521825	ENTREZGENE
PANTHER	G-PROTEIN COUPLED RECEPTOR	UniProtKB/TrEMBL
	OLFACTORY RECEPTOR	UniProtKB/TrEMBL
Pfam	7tm_4	UniProtKB/TrEMBL
PRINTS	GPCRRHODOPSN	UniProtKB/TrEMBL
	OLFACTORYR	UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F1_1	UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F1_2	UniProtKB/TrEMBL
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/TrEMBL
UniProt	A0A287AFS5	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1T1Z4_PIG	UniProtKB/TrEMBL
	A0A8D0X5W6_PIG	UniProtKB/TrEMBL
	A0A8D0Z211_PIG	UniProtKB/TrEMBL
	A0A8D1F896_PIG	UniProtKB/TrEMBL
	A0A8D1H8V4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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