RGS13 (regulator of G protein signaling 13) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: RGS13 (regulator of G protein signaling 13) Sus scrofa
Analyze
Symbol: RGS13
Name: regulator of G protein signaling 13
RGD ID: 14094048
Description: INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); negative regulation of G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); Hyperparathyroidism 1 (ortholog); parathyroid carcinoma (ortholog); FOUND IN cytosol (inferred); nucleus (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: regulator of G-protein signaling 13
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl101,057,622 - 1,082,222 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1101,056,920 - 1,082,394 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2102,695,589 - 2,702,748 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA)
nucleus  (IEA)
plasma membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
RGS13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl101,057,622 - 1,082,222 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1101,056,920 - 1,082,394 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2102,695,589 - 2,702,748 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RGS13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381192,636,147 - 192,660,311 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1192,636,138 - 192,660,311 (+)EnsemblGRCh38hg38GRCh38
GRCh371192,605,277 - 192,629,441 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361190,871,905 - 190,896,013 (+)NCBINCBI36Build 36hg18NCBI36
Celera1165,715,071 - 165,739,113 (+)NCBICelera
Cytogenetic Map1q31.2NCBI
HuRef1163,841,268 - 163,865,380 (+)NCBIHuRef
CHM1_11194,027,097 - 194,051,266 (+)NCBICHM1_1
T2T-CHM13v2.01191,983,284 - 192,007,378 (+)NCBIT2T-CHM13v2.0
Rgs13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391144,013,083 - 144,053,240 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1144,014,392 - 144,053,110 (-)EnsemblGRCm39 Ensembl
GRCm381144,137,386 - 144,177,372 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1144,138,654 - 144,177,372 (-)EnsemblGRCm38mm10GRCm38
MGSCv371145,985,797 - 146,024,502 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361145,900,885 - 145,939,590 (-)NCBIMGSCv36mm8
Celera1146,698,430 - 146,735,959 (-)NCBICelera
Cytogenetic Map1FNCBI
cM Map162.56NCBI
Rgs13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81358,472,604 - 58,505,922 (-)NCBIGRCr8
mRatBN7.21355,922,290 - 55,955,753 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1355,922,395 - 55,955,648 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01360,970,172 - 61,004,260 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1360,970,247 - 61,003,744 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01365,957,018 - 65,989,542 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41358,016,245 - 58,042,762 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1355,997,004 - 56,031,895 (-)NCBICelera
Cytogenetic Map13q21NCBI
Rgs13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540630,111,760 - 30,135,283 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540630,111,770 - 30,134,605 (+)NCBIChiLan1.0ChiLan1.0
RGS13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2157,128,862 - 57,152,921 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1156,791,844 - 56,815,911 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01168,073,338 - 168,124,215 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11172,395,240 - 172,419,307 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1172,395,240 - 172,419,307 (+)Ensemblpanpan1.1panPan2
RGS13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1386,291,146 - 6,316,662 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl386,291,182 - 6,315,198 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha386,385,503 - 6,413,908 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0386,305,783 - 6,334,197 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl386,308,730 - 6,334,213 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1386,304,512 - 6,332,968 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0386,670,204 - 6,698,602 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0386,905,903 - 6,934,312 (-)NCBIUU_Cfam_GSD_1.0
Rgs13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934481,181,016 - 81,210,806 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936638940,677 - 963,585 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936638940,691 - 963,585 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RGS13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12536,775,602 - 36,802,311 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2536,776,345 - 36,791,180 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605537,725,660 - 37,749,745 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rgs13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624814916,732 - 931,380 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624814914,509 - 1,012,924 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RGS13
845 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 20 3 2 5 14 12 20 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000041720   ⟹   ENSSSCP00000047956
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl101,058,055 - 1,082,222 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000059364   ⟹   ENSSSCP00000035191
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl101,057,622 - 1,076,814 (-)Ensembl
RefSeq Acc Id: XM_021064089   ⟹   XP_020919748
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1101,056,920 - 1,082,394 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021064090   ⟹   XP_020919749
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1101,056,920 - 1,082,394 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021064091   ⟹   XP_020919750
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1101,056,920 - 1,082,394 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021064092   ⟹   XP_020919751
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1101,056,920 - 1,082,394 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021064093   ⟹   XP_020919752
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1101,056,920 - 1,082,391 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021064094   ⟹   XP_020919753
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1101,056,920 - 1,080,726 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021064095   ⟹   XP_020919754
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1101,056,920 - 1,079,459 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020919751   ⟸   XM_021064092
- Peptide Label: isoform X2
- UniProtKB: A0A287AV19 (UniProtKB/TrEMBL),   A0A8D0R492 (UniProtKB/TrEMBL),   A0A8D1WAN3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020919748   ⟸   XM_021064089
- Peptide Label: isoform X1
- UniProtKB: A0A8D1WAN3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020919749   ⟸   XM_021064090
- Peptide Label: isoform X2
- UniProtKB: A0A287AV19 (UniProtKB/TrEMBL),   A0A8D0R492 (UniProtKB/TrEMBL),   A0A8D1WAN3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020919750   ⟸   XM_021064091
- Peptide Label: isoform X2
- UniProtKB: A0A287AV19 (UniProtKB/TrEMBL),   A0A8D0R492 (UniProtKB/TrEMBL),   A0A8D1WAN3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020919752   ⟸   XM_021064093
- Peptide Label: isoform X3
- UniProtKB: A0A8D0LQR5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020919753   ⟸   XM_021064094
- Peptide Label: isoform X3
- UniProtKB: A0A8D0LQR5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020919754   ⟸   XM_021064095
- Peptide Label: isoform X3
- UniProtKB: A0A8D0LQR5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000047956   ⟸   ENSSSCT00000041720
Ensembl Acc Id: ENSSSCP00000035191   ⟸   ENSSSCT00000059364
Protein Domains
RGS


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000040300 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015071122 UniProtKB/TrEMBL
  ENSSSCG00025018566 UniProtKB/TrEMBL
  ENSSSCG00030005877 UniProtKB/TrEMBL
  ENSSSCG00035058559 UniProtKB/TrEMBL
  ENSSSCG00040059423 UniProtKB/TrEMBL
  ENSSSCG00045025221 UniProtKB/TrEMBL
  ENSSSCG00050026490 UniProtKB/TrEMBL
  ENSSSCG00055000819 UniProtKB/TrEMBL
  ENSSSCG00060062760 UniProtKB/TrEMBL
  ENSSSCG00065055125 UniProtKB/TrEMBL
  ENSSSCG00070012053 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000041720 ENTREZGENE
  ENSSSCT00000041720.2 UniProtKB/TrEMBL
  ENSSSCT00000059364.3 UniProtKB/TrEMBL
  ENSSSCT00015095439.1 UniProtKB/TrEMBL
  ENSSSCT00025025209.1 UniProtKB/TrEMBL
  ENSSSCT00030007980.1 UniProtKB/TrEMBL
  ENSSSCT00035078374.1 UniProtKB/TrEMBL
  ENSSSCT00040080784.1 UniProtKB/TrEMBL
  ENSSSCT00045043133.1 UniProtKB/TrEMBL
  ENSSSCT00050035651.1 UniProtKB/TrEMBL
  ENSSSCT00055001426.1 UniProtKB/TrEMBL
  ENSSSCT00060085602.1 UniProtKB/TrEMBL
  ENSSSCT00065075460.1 UniProtKB/TrEMBL
  ENSSSCT00070023501.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.167.10 UniProtKB/TrEMBL
  1.10.196.10 UniProtKB/TrEMBL
InterPro RGS UniProtKB/TrEMBL
  RGS_sf UniProtKB/TrEMBL
  RGS_subdom1/3 UniProtKB/TrEMBL
  RGS_subdomain_2 UniProtKB/TrEMBL
NCBI Gene RGS13 ENTREZGENE
PANTHER PTHR10845:SF32 UniProtKB/TrEMBL
  REGULATOR OF G PROTEIN SIGNALING UniProtKB/TrEMBL
Pfam RGS UniProtKB/TrEMBL
PRINTS RGSPROTEIN UniProtKB/TrEMBL
PROSITE RGS UniProtKB/TrEMBL
SMART RGS UniProtKB/TrEMBL
Superfamily-SCOP SSF48097 UniProtKB/TrEMBL
UniProt A0A286ZUM6_PIG UniProtKB/TrEMBL
  A0A287AV19 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0LQR5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0R492 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1WAN3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:96537 ENTREZGENE