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Gene: LOC100511466 (olfactory receptor 13-like) Sus scrofa

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Symbol:

LOC100511466

Name:

olfactory receptor 13-like

RGD ID:

14081586

Description:

ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); FOUND IN membrane (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	9	113,457,987 - 113,458,928 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	124,906,828 - 124,907,760 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

detection of chemical stimulus involved in sensory perception of smell (IBA,IEA)

G protein-coupled receptor signaling pathway (IEA)

sensory perception of smell (IEA)

Cellular Component

membrane (IBA,IEA)

plasma membrane (IEA)

Molecular Function

G protein-coupled receptor activity (IEA)

odorant binding (IBA)

olfactory receptor activity (IBA,IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

LOC100511466
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	9	113,457,987 - 113,458,928 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	124,906,828 - 124,907,760 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

OR2A7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	144,257,663 - 144,264,792 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	144,257,663 - 144,264,792 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	143,954,756 - 143,961,885 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	143,586,722 - 143,587,654 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	143,393,436 - 143,394,369	NCBI
Celera	6	132,768,253 - 132,769,185 (-)	NCBI		Celera
Cytogenetic Map	7	q35	NCBI
HuRef	7	138,089,781 - 138,090,713 (+)	NCBI		HuRef
CHM1_1	7	143,893,176 - 143,894,108 (-)	NCBI		CHM1_1
CRA_TCAGchr7v2	7	143,294,047 - 143,294,979 (-)	NCBI

Or2a7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	43,150,922 - 43,151,854 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	43,149,074 - 43,154,394 (+)	Ensembl		GRCm39 Ensembl
GRCm38	6	43,173,988 - 43,174,920 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	43,172,140 - 43,177,460 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	43,123,987 - 43,124,919 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	43,103,595 - 43,104,527 (+)	NCBI		MGSCv36	mm8
Celera	6	43,121,688 - 43,122,620 (+)	NCBI		Celera
Cytogenetic Map	6	B2.1	NCBI
cM Map	6	21.1	NCBI

Or2a7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	72,979,036 - 72,979,968 (+)	NCBI		GRCr8
mRatBN7.2	4	71,979,026 - 71,979,958 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	71,976,693 - 71,980,863 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	76,970,375 - 76,971,307 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	72,883,605 - 72,884,537 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	71,272,943 - 71,273,875 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	72,603,242 - 72,604,174 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	72,603,242 - 72,604,174 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	137,305,509 - 137,306,191 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	70,919,543 - 70,920,475 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	71,195,672 - 71,196,605 (+)	NCBI
Celera	4	66,924,820 - 66,925,752 (+)	NCBI		Celera
Cytogenetic Map	4	q24	NCBI

OR2A7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	5,725,634 - 5,730,268 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	5,725,751 - 5,726,683 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	6,837,769 - 6,838,701 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	5,590,151 - 5,594,791 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	5,590,268 - 5,591,200 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	16	5,519,547 - 5,520,479 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	5,377,978 - 5,378,910 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	5,449,155 - 5,450,087 (-)	NCBI		UU_Cfam_GSD_1.0

LOC103227416
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	112,930,270 - 112,939,631 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666072	9,708,052 - 9,709,773 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in LOC100511466
31 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system
1

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003130292	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000070	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_003130292 ⟹ XP_003130340

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	9	113,457,987 - 113,458,928 (-)	NCBI

Sequence:

show sequence

CATAGTGATATGGGAGACAATATGACCTCTGTCACAGAGTTCATCCTGCTGGGATTTTCTCTTG
ACCCAAGGATTCAGCTGTTCCTCTTTGGGCTCTTCTTCCTGTGCTATGCCTTCACCCTGCTGGG
GAATGGGGTCATCCTGGGGCTCATCTCATTGGACTCCAGACTGCACACCCCCATGTACTTCTTC
CTCTCACACCTGGCCATCGTTGACATAGCTTATGCCTGCAACACGGTGCCCCAGATGCTGATAA
ACCTCCTGAGTCCAACCAAGCCCATCTCCTTCACTGGCTGCATGACACAGACCTTTCTCTTTTT
GAGCTTTGCTCACATTGAATGTCTTCTCCTGGTGGTGATGTCCTATGATCGGTACGTGGCCATC
TGCCACCCCCTCCGATATTCTGCCATCGTGAGCTGGAGAGTTTGCATTACCCTGGTAGTGATTC
CCTGGGCCATTGGAGTCCTTCTGTCTTTGATTCATCTAGTGTTACTTTTACCCTTACCTTTCTG
TATCTCCCAGAAAATCAATCACTTTTTCTGTGAAATCATGGCTCTACTCAAACTTGCTTGTGCA
GATACCCACATTAATGAAACTGTGGTATTGGCTGGAGCAATTTCTGTGCTACTGGGACCATTCT
CCTTAATTGTAATCTCATACATGTGCATCTTCTGTTCCATCCTTAGGATCCAATCTGGGGGAGG
GCAAAAAAAAGCCTTCTCCACCTGCTCATCTCACCTCTGTGTGGTTGGGCTCTTTTATGGCACA
GCCATTATCACCTATGTTGGGCCCAGATATGGGAACCCCAAGGAGCCGAAGAAATATCTTCTCC
TGTTTCATAGCCTTTTCAATCCCATGCTCAATCCTCTTATATACACTCTTAGAAATTTGGAAGT
AAAGGGTGCCTTAAAGAGAGTGCTGGGAATAAAGAGAGCTTTATGA

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Protein Sequences


Protein RefSeqs	XP_003130340	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000016400
	ENSSSCP00000016400.1
	ENSSSCP00015027839.1
	ENSSSCP00025000116.1
	ENSSSCP00035027968.1
	ENSSSCP00045038157.1
	ENSSSCP00050043117.1
	ENSSSCP00060035739.1
	ENSSSCP00065024018.1
	ENSSSCP00070030277.1

RefSeq Acc Id:

XP_003130340 ⟸ XM_003130292

- UniProtKB:

F1S7V0 (UniProtKB/TrEMBL), A0A4X1UNL6 (UniProtKB/TrEMBL), A0A8D1AF33 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGDNMTSVTEFILLGFSLDPRIQLFLFGLFFLCYAFTLLGNGVILGLISLDSRLHTPMYFFLSH
LAIVDIAYACNTVPQMLINLLSPTKPISFTGCMTQTFLFLSFAHIECLLLVVMSYDRYVAICHP
LRYSAIVSWRVCITLVVIPWAIGVLLSLIHLVLLLPLPFCISQKINHFFCEIMALLKLACADTH
INETVVLAGAISVLLGPFSLIVISYMCIFCSILRIQSGGGQKKAFSTCSSHLCVVGLFYGTAII
TYVGPRYGNPKEPKKYLLLFHSLFNPMLNPLIYTLRNLEVKGALKRVLGIKRAL

hide sequence

Protein Domains

G-protein coupled receptors family 1 profile

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000015469	ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015052274	UniProtKB/TrEMBL
	ENSSSCG00025000329	UniProtKB/TrEMBL
	ENSSSCG00035051872	UniProtKB/TrEMBL
	ENSSSCG00045032079	UniProtKB/TrEMBL
	ENSSSCG00050072947	UniProtKB/TrEMBL
	ENSSSCG00060060522	UniProtKB/TrEMBL
	ENSSSCG00065040448	UniProtKB/TrEMBL
	ENSSSCG00070018363	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000016851	ENTREZGENE
	ENSSSCT00000016851.3	UniProtKB/TrEMBL
	ENSSSCT00015069589.1	UniProtKB/TrEMBL
	ENSSSCT00025000396.1	UniProtKB/TrEMBL
	ENSSSCT00035069098.1	UniProtKB/TrEMBL
	ENSSSCT00045054763.1	UniProtKB/TrEMBL
	ENSSSCT00050099631.1	UniProtKB/TrEMBL
	ENSSSCT00060082531.1	UniProtKB/TrEMBL
	ENSSSCT00065055287.1	UniProtKB/TrEMBL
	ENSSSCT00070036221.1	UniProtKB/TrEMBL
Gene3D-CATH	Rhodopsin 7-helix transmembrane proteins	UniProtKB/TrEMBL
InterPro	GPCR_Rhodpsn	UniProtKB/TrEMBL
	GPCR_Rhodpsn_7TM	UniProtKB/TrEMBL
	Olfact_rcpt	UniProtKB/TrEMBL
KEGG Report	ssc:100511466	UniProtKB/TrEMBL
NCBI Gene	LOC100511466	ENTREZGENE
PANTHER	OLFACTORY RECEPTOR	UniProtKB/TrEMBL
	OLFACTORY RECEPTOR	UniProtKB/TrEMBL
	OLFACTORY RECEPTOR 13	UniProtKB/TrEMBL
Pfam	7tm_4	UniProtKB/TrEMBL
PRINTS	GPCRRHODOPSN	UniProtKB/TrEMBL
	OLFACTORYR	UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F1_1	UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F1_2	UniProtKB/TrEMBL
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/TrEMBL
UniProt	A0A4X1UNL6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0P437_PIG	UniProtKB/TrEMBL
	A0A8D1AF33	ENTREZGENE, UniProtKB/TrEMBL
	F1S7V0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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