THYN1 (thymocyte nuclear protein 1) - Rat Genome Database

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Gene: THYN1 (thymocyte nuclear protein 1) Sus scrofa
Analyze
Symbol: THYN1
Name: thymocyte nuclear protein 1
RGD ID: 14080802
Description: ASSOCIATED WITH chromosome 11 partial duplication syndrome (ortholog); Experimental Liver Cirrhosis (ortholog); Isobutyryl-CoA Dehydrogenase Deficiency (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl960,802,928 - 60,807,409 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1960,802,925 - 60,807,404 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2967,487,439 - 67,490,210 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:30032202  


Genomics

Comparative Map Data
THYN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl960,802,928 - 60,807,409 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1960,802,925 - 60,807,404 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2967,487,439 - 67,490,210 (-)NCBISscrofa10.2Sscrofa10.2susScr3
THYN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811134,248,282 - 134,253,352 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11134,248,279 - 134,253,370 (-)EnsemblGRCh38hg38GRCh38
GRCh3711134,118,176 - 134,123,246 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611133,623,383 - 133,628,470 (-)NCBINCBI36Build 36hg18NCBI36
Celera11131,291,036 - 131,296,123 (-)NCBICelera
Cytogenetic Map11q25NCBI
HuRef11130,072,934 - 130,078,021 (-)NCBIHuRef
CHM1_111134,004,909 - 134,009,996 (-)NCBICHM1_1
T2T-CHM13v2.011134,290,127 - 134,295,197 (-)NCBIT2T-CHM13v2.0
Thyn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39926,910,950 - 26,918,632 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl926,911,006 - 26,918,632 (+)EnsemblGRCm39 Ensembl
GRCm38926,999,642 - 27,007,336 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl926,999,710 - 27,007,336 (+)EnsemblGRCm38mm10GRCm38
MGSCv37926,807,262 - 26,814,919 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36926,749,168 - 26,756,780 (+)NCBIMGSCv36mm8
Celera924,257,858 - 24,265,515 (+)NCBICelera
Cytogenetic Map9A4NCBI
cM Map912.06NCBI
Thyn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8833,665,614 - 33,674,593 (+)NCBIGRCr8
mRatBN7.2825,406,563 - 25,415,445 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl825,406,500 - 25,415,445 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx829,448,526 - 29,457,408 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0827,742,824 - 27,751,706 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0825,622,821 - 25,631,701 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0828,045,093 - 28,053,974 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl828,045,093 - 28,054,040 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0828,064,823 - 28,073,704 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera826,894,403 - 26,903,284 (+)NCBICelera
Cytogenetic Map8q13NCBI
Thyn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541235,061,874 - 35,067,352 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541235,061,874 - 35,067,631 (-)NCBIChiLan1.0ChiLan1.0
THYN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29134,973,015 - 134,978,114 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111136,072,201 - 136,077,297 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011129,101,422 - 129,106,521 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111132,958,850 - 132,963,927 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11132,958,850 - 132,963,911 (-)Ensemblpanpan1.1panPan2
THYN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.15992,126 - 999,609 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl5993,705 - 999,597 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha51,113,214 - 1,119,427 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.05949,494 - 955,705 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl5949,604 - 955,655 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.15982,706 - 988,908 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.05982,880 - 989,086 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.051,020,810 - 1,027,022 (+)NCBIUU_Cfam_GSD_1.0
Thyn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947116,001,021 - 116,011,924 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366841,591,270 - 1,597,609 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366841,591,158 - 1,601,833 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
THYN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11125,308,232 - 125,313,553 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666043731,010 - 736,452 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Thyn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248128,805,196 - 8,810,582 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248128,805,196 - 8,810,559 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in THYN1
96 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000026386   ⟹   ENSSSCP00000021651
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl960,802,931 - 60,807,409 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000075636   ⟹   ENSSSCP00000071125
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl960,802,928 - 60,805,976 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000078195   ⟹   ENSSSCP00000064817
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl960,803,106 - 60,807,409 (-)Ensembl
RefSeq Acc Id: XM_021063174   ⟹   XP_020918833
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1960,802,925 - 60,807,361 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021063175   ⟹   XP_020918834
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1960,802,925 - 60,807,404 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020918834   ⟸   XM_021063175
- Peptide Label: isoform X2
- UniProtKB: A0A4X1V9Q4 (UniProtKB/TrEMBL),   I3LC77 (UniProtKB/TrEMBL),   A0A8D1P3F6 (UniProtKB/TrEMBL),   A0A8D1R6B4 (UniProtKB/TrEMBL),   A0A8D0PXS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020918833   ⟸   XM_021063174
- Peptide Label: isoform X1
- UniProtKB: A0A8D1DVF5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000064817   ⟸   ENSSSCT00000078195
Ensembl Acc Id: ENSSSCP00000021651   ⟸   ENSSSCT00000026386
Ensembl Acc Id: ENSSSCP00000071125   ⟸   ENSSSCT00000075636
Protein Domains
EVE


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000028149 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015073371 UniProtKB/TrEMBL
  ENSSSCG00035068778 UniProtKB/TrEMBL
  ENSSSCG00040022534 UniProtKB/TrEMBL
  ENSSSCG00045033328 UniProtKB/TrEMBL
  ENSSSCG00050077457 UniProtKB/TrEMBL
  ENSSSCG00055019878 UniProtKB/TrEMBL
  ENSSSCG00065043670 UniProtKB/TrEMBL
  ENSSSCG00070022682 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000026386 ENTREZGENE
  ENSSSCT00000026386.4 UniProtKB/TrEMBL
  ENSSSCT00000075636.2 UniProtKB/TrEMBL
  ENSSSCT00000078195.2 UniProtKB/TrEMBL
  ENSSSCT00015098726.1 UniProtKB/TrEMBL
  ENSSSCT00015098815.1 UniProtKB/TrEMBL
  ENSSSCT00015098928.1 UniProtKB/TrEMBL
  ENSSSCT00035092899.1 UniProtKB/TrEMBL
  ENSSSCT00035092923.1 UniProtKB/TrEMBL
  ENSSSCT00035092984.1 UniProtKB/TrEMBL
  ENSSSCT00040030511.1 UniProtKB/TrEMBL
  ENSSSCT00040030618.1 UniProtKB/TrEMBL
  ENSSSCT00045057011.1 UniProtKB/TrEMBL
  ENSSSCT00045057053.1 UniProtKB/TrEMBL
  ENSSSCT00045057127.1 UniProtKB/TrEMBL
  ENSSSCT00050106628.1 UniProtKB/TrEMBL
  ENSSSCT00055039089.1 UniProtKB/TrEMBL
  ENSSSCT00055039153.1 UniProtKB/TrEMBL
  ENSSSCT00055039277.1 UniProtKB/TrEMBL
  ENSSSCT00065059753.1 UniProtKB/TrEMBL
  ENSSSCT00065059756.1 UniProtKB/TrEMBL
  ENSSSCT00065059763.1 UniProtKB/TrEMBL
  ENSSSCT00070045090.1 UniProtKB/TrEMBL
  ENSSSCT00070045095.1 UniProtKB/TrEMBL
Gene3D-CATH ph1033 like domains UniProtKB/TrEMBL
InterPro 5hmC_binding UniProtKB/TrEMBL
  EVE_domain UniProtKB/TrEMBL
  PUA-like_sf UniProtKB/TrEMBL
  THYN1-like_EVE UniProtKB/TrEMBL
NCBI Gene THYN1 ENTREZGENE
PANTHER THYMOCYTE NUCLEAR PROTEIN 1 UniProtKB/TrEMBL
  THYMOCYTE NUCLEAR PROTEIN 1 UniProtKB/TrEMBL
Pfam EVE UniProtKB/TrEMBL
Superfamily-SCOP SSF88697 UniProtKB/TrEMBL
UniProt A0A4X1V9Q4 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1V9R2_PIG UniProtKB/TrEMBL
  A0A5G2QS34_PIG UniProtKB/TrEMBL
  A0A5G2RAH1_PIG UniProtKB/TrEMBL
  A0A8D0PXS3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0PXZ7_PIG UniProtKB/TrEMBL
  A0A8D0UBW6_PIG UniProtKB/TrEMBL
  A0A8D1DVF5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1ITT0_PIG UniProtKB/TrEMBL
  A0A8D1P3F6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1R6B4 ENTREZGENE
  I3LC77 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:93974 ENTREZGENE