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Gene: CFAP54 (cilia and flagella associated protein 54) Sus scrofa

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Symbol:

CFAP54

Name:

cilia and flagella associated protein 54

RGD ID:

14072098

Description:

INVOLVED IN cerebrospinal fluid circulation (ortholog); establishment of localization in cell (ortholog); mucociliary clearance (ortholog); FOUND IN extracellular region (inferred); membrane (inferred); INTERACTS WITH deoxynivalenol

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

cilia- and flagella-associated protein 54

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	86,792,450 - 87,102,623 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	86,792,443 - 87,102,621 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	91,180,101 - 91,258,194 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

deoxynivalenol (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cerebrospinal fluid circulation (IEA,ISO)

cilium assembly (IEA)

cilium movement involved in cell motility (IEA)

establishment of localization in cell (IEA,ISO)

mucociliary clearance (IEA,ISO)

sperm flagellum assembly (IEA,ISO)

spermatogenesis (IEA)

Cellular Component

extracellular region (IEA)

membrane (IEA)

References

Additional References at PubMed

PMID:14681463	PMID:17145712	PMID:30032202

Genomics

Comparative Map Data

CFAP54
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	86,792,450 - 87,102,623 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	86,792,443 - 87,102,621 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	91,180,101 - 91,258,194 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CFAP54
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	96,489,577 - 96,875,555 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	96,489,571 - 96,875,555 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	96,883,355 - 97,269,333 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	95,407,519 - 95,546,701 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	96,549,428 - 96,706,938 (+)	NCBI		Celera
Cytogenetic Map	12	q23.1	NCBI
HuRef	12	93,945,652 - 94,221,189 (+)	NCBI		HuRef
CHM1_1	12	96,931,919 - 97,234,274 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	96,463,738 - 96,849,324 (+)	NCBI		T2T-CHM13v2.0

Cfap54
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	92,611,471 - 92,919,085 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	92,611,481 - 92,917,480 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	92,775,609 - 93,083,487 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	92,775,619 - 93,081,618 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	92,331,454 - 92,544,363 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	92,298,508 - 92,511,701 (-)	NCBI		MGSCv36	mm8
Celera	10	94,862,897 - 95,067,323 (-)	NCBI		Celera
Cytogenetic Map	10	C2	NCBI
cM Map	10	47.44	NCBI

Cfap54
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	29,203,143 - 29,489,551 (-)	NCBI		GRCr8
mRatBN7.2	7	27,316,498 - 27,601,630 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	27,316,502 - 27,602,144 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	7	33,623,692 - 33,916,849 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	33,702,770 - 33,793,565 (-)	NCBI	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	33,697,102 - 33,882,972 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	29,868,634 - 30,038,401 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	24,421,100 - 24,703,815 (-)	NCBI		Celera
Cytogenetic Map	7	q13	NCBI

Cfap54
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	32,759,176 - 33,036,774 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955405	32,728,455 - 33,036,612 (+)	NCBI	ChiLan1.0	ChiLan1.0

CFAP54
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	104,551,805 - 104,948,892 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	104,548,195 - 104,945,282 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	94,069,654 - 94,466,858 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	97,488,816 - 97,882,846 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	97,488,849 - 97,868,869 (+)	Ensembl	panpan1.1		panPan2

CFAP54
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	36,206,194 - 36,498,890 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	36,206,418 - 36,497,261 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	36,591,367 - 36,882,248 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	36,871,401 - 37,162,169 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	36,871,396 - 37,161,622 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	36,143,401 - 36,434,121 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	36,237,597 - 36,527,911 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	36,501,755 - 36,799,155 (+)	NCBI		UU_Cfam_GSD_1.0

Cfap54
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	23,462,465 - 23,750,961 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936507	12,484,595 - 12,772,950 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CFAP54
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	91,853,456 - 92,226,841 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666037	152,873,257 - 153,273,449 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cfap54
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624750	10,575,933 - 10,902,388 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CFAP54
10378 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021092730	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK397464	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01010003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000045047 ⟹ ENSSSCP00000040348

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	5	87,055,235 - 87,102,623 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000103885 ⟹ ENSSSCP00000081118

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	5	86,792,450 - 87,102,594 (-)	Ensembl

RefSeq Acc Id:

XM_021092730 ⟹ XP_020948389

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	5	86,792,443 - 87,102,621 (-)	NCBI

Sequence:

show sequence

TCCTGGTGAGGCCAGGGTCTTGGCAATATGGCGGCGCACGGCACCTGTTCGTTCTCCCCATCCA
ACTTGTCTCCCACCTCGGTGTCGCCACCAGGACCGCCGCCCACGCCACCCCCCACCTCGACCGC
GATCTCAAAATCACCCCTGGAGTCGAAGGCGAGCTCGCTGAGCCCAGTGCCTCACTCGACCTGC
CATGAGGATTCGTTGCCCCTTGCCGTGTTTTATGGGCCACTGGATGCTAAAAACCCACTCCTGG
TCTCCTGTGAGAAGGAGATCCAGGAGTTGCTAGGCTTTATGAAGAGAAAGAAGGCTTTAGCTAC
AACGGAGGAACAGAAGCACGAATTCCACCGGCGTTGTGCCACCTCTCTGTTTAATATCTGGACC
AAATACGCCCCCCGGCTGCCAGCTGCCTATTACAACGAGAAGCTTCTGAAAGTTGGAGATAGCC
TTTGTGAAATGAAAGAATATAAGTTGGCCCTTTTACAGTGCTATGGGAGGTACCTTCAGCAGTT
CACCGTCAACTTTGATGAGCATAAAGCAGACGTGAACGAATTCAAAGCTGTATTTTTTCCAAAA
GGCCTTGGAGACAAAACCGCTGCACAAACATTTCATGCTTTAAATGGCAAAAATATTTGCAGCT
ACCAGCTAGTCTGTGACAGTGACACAAACCTGCAGAATAGAGAATCTGTGATCCATTGTCTGCA
CATCTTGTCCTCCTTGAGACTCATCATGCAGGCGGCTTTGCCACAGGAGCACCTTTGCTGGATT
ATCTTCAATGGTACCATTTACATTTACACCATTTGCAGAAAGCTGATGATCATAGGTCACTCTT
CCAAGGCCTTGGAATATCTCCTGTGGGCAAGTATGTGTATGGAGTCCTCGGTGCCACTCCTGGC
CGTCAGGTACCTGACGTGGAGAGCCAGCCTCTACACCGCCGTCTGCCAGTGCTACTATGACTGC
CACGCGGGTGTCCACGGAGAGGCATTTGCTCGGCGTGCTTTAGCTAAAATTGATGAGTTAAGGC
AACTGGAATTAATGAGTTCCTCACCATCGCAGGAGGAGTCCAGAAGATGTTACAGAGAGGCCGC
GATAAAGATGGCAGTCATGATCTTCAAAAGAGGAGTGTTTGAATCTCGAAGAAAAAACAAAAGT
CTCTTTAGACCAAAGATAAGAGTTAACCTAAGGGAAGCACAGACCCTGCAGTGGCCCCGTACTG
TCACAGAACGGCTGTTGGATGAGATGTTTGATAGCACTGCGTCCCGATTTCTGGCCGTCTTGGA
AGCTCTTTCTGATTCAAATCGGCGAACCCTGCAAACTGGGCCCGTTGTTACAGAAGAAGTAGAA
GTTCGTGATGTTGTCTCAGAACTGTTTATAGCAGGACGAGAACTACTCATCACATCAAACACTG
GTGCAGAAGGGACGCTTGATTTTCCAAAATCATCTCTTCTGCCACTTATTATACAAAGAAAAAA
TGTTATTTCTGTGGATGCTGCTGTGAAGTTTATAAAATTAGCTTTTACTTACGAGGAATGGAGT
TTATTTGAATCTTCAGCTGGGCAGCTTATTGATTTTCTCCAGAGGCAGGATGATCCAGAGTCAA
AGAAAGCAGAGAAGGAGTTACTTCTTCTGATTGCAATAGAACCTTTAATCAATGTAAAGAGAAA
CAAAGGTTTGATCTTTCCTCTTGAAAACTTCAAAGAAGGTCAAGTTTACTGTAAAAAAATTGCT
TTTCATGATACCTGCGGGAAGGCTTGTGGACATTCAGAAGATGTTTTCCTTTTGGCGACAACCT
TATATTCCTGCGTCTGTGACTCTCCACAGGATGCTCAGCCTGATAAGGAAATTGTGGTGGACAC
GATAATGTTCCTGTGGCAGAAATGCAAATTAGGCCTCCAGCGGCTCAATGTGGCCAGGAATGAC
TCTGCGAAGCTCACCCAGAAAATCAGTACTAATAAATGGGTTTACCTTCTCTGGCAGATAAATG
AAGTAATTCAGTGCTATAACATGGAAAACATTGACGTGGTGGTGGTGGCAGAGGTCACATTACG
ATTAAGTGAAATACTGGAGTCGTTAGGAAACCCAAGAAGAAAACTTAAAAAGTCTCTAGATACA
CCTTTAAAAGACGGGACTAATGAATTGCTTGGGACTCAGAAAGGGAGCATGGAAACTCTTCCAA
TATTAAAGAAAAAACCTGAGGAACAGTTACTTTTGGCCTATGAACTTCTTGATAAAGCAATTGA
TGGAGTAAATTTGAACTGCATGTTAACTGCTTTGCCAAATGGATCATCAGTGGTTGACCATTGC
TATGCCATGCACACCAACTATGTAGACGGAGACCTGTGCAAACCAGTCACACCAAATAGTTTCA
TGATGGATTTGCATCTTGAGCTAATTCAAGCCCAGCACCGAATAGCCGTTCTGCTTCTTGACCA
ATTGCAAGTTTTGCAGACCCCAACTGTTAGAAAAAATGTATCTACCACAGGCCCGGAGAAGCTA
AAAAACTCTGGAAGCCCTGATTGTTTTACAGAATTAAGTGTAATGAATAAAATAAGGAAGAATA
AGCTATCCAAAGCAATTTACTTGATGCAGAAAGCTCTTCTGATGTTTGAGAAAGATGCGACCTG
TTCATCTGTCCATAACTTCTTGATGGAAGCTTATTCTTTAATTGAGAAGACTGAAGCAGAACAA
AGAATACTCTATTCATATCAGAGATATTTGGAAATTACCAAAAGAAGGAAAAGCAGAGTCCCTC
CTCCACCCATTCTGCTGGCCCGAACTCATTGTTCTGTGACGTTAAAACCGGCTCCTTTTATTTC
GGATGTTAAGGTCTCCTGGTACTGCATTTTGGGATGCAAAGCAAAAGGGAGCTATGGAAAAGTG
AGACTAAATAATAACCATCTCCCAAACTCAGGGGAAGCGATACCAGCTGATGGCAAAAGCATCT
TTGAAGTAAAAGGTTTAGAGACCAATGAAAAATACATCTTTGCAGTTGCTGCTTATTGTTCTAA
TGGGAAGCTCATTGGTGATGCTGTTGGGGAGACAACTAAACCAATTCTGGTTTACCCACCTCTT
TCTGCTGTTACTACTCGGATGTTACTGACACAGGTCGCCTATCAGATTGGGAACTACCAGTTGG
CTAAGAAAGTCTTCTCACCAGTCTGGGATTATTTTGTTGTTTCGCCACCTCAGGATGACCAATC
CATTGTTTGTTTAAGCAATATAATGACTATTACACAGAGAAGATTACATTCAGATATCTTGGCA
GAGACGTCTTCCATTCTCTTAAATCTTTTTCTTAGAAATATTTTTGTAACAAGTGACATTAAAA
TTAAAGAGGAACATCTTTTCTGTGATAATATTAAAGGCAATGAGATTTTCCCCTCTCAACAAAT
TGCTAGACTAACTGAATGTGAGAGAGTGTTAGTGGCATTGGAACTTAGCAACTACCTAAATGAT
TCCACTTATGCCCTTCAAGCAGTGACTCAATGCTATGGCCTCCTGGCTCCTATAATCTATCACA
ATATTGTTTTGGTACCTGTTGTACAGATCTTGATAAAATGTATAGTGGTTTTGCAAGGACTACC
AAATATCATCCACTCAAAGAAACACATTGCGAGCTTTGAAAGTGTGCAGCACATGATAGCTTGT
TGTATCTTCTATATAACAAAGATTCTGCGTTCGTGGAAGGAGTATGACCTGGCAGTAGCAATTA
TAAATTATGGAAAAAAGATGTTGGACATCACATCTGGATGCAAATCTCTGTTTGGTGCTGCTGA
ACACGAAGAGGTGCAAGACGAGGGTTCTTTGAAGAAGTCTTCCAAGACTAAGAAGCCACAGCAA
ATATTACTACCTGAAAAAATAAATGAACAGCTGGTCTTACTGGAGACACACCTACTCAAACTGA
CAAAGCAATATGTTACGACTGAACTCTCAGGAGCAGAGGATCCTATATTTCTTTACCCTATAGT
TTTAAATTGGTCGGTCAAAAGTGCTGTGAAAGAAGTTATGAAATTTAAGCAGAGACCTCGATTC
CTGGAATTCTTTACACAAGTTATGCTCAAATGTATGAATGATGAAAAATTTCAAATTATGGTGG
AGATAACAAATCCTGTCCACGACTTCTTGAAAAGGAGGAATGAATCCCTACTTGGAATTAAAAA
AATGAAATGTAAGGAAGGTACTTGGAGTAAAAAGGCCGCCAAACCTTTGCAGAAGTTCAGCGCT
GCAGTCCTGGAGATTGGAAGAGTAAACAGATACGATGCCAAGAAAAAGAAATAAAGAAAGGAAA
CTCTAAGAGAATTTTTGAATAAAAATCCTTGTGTTTCTGAAATGGGAGAGCAAGAAAGAAATAA
GAGAACTGATGTTCGAAAAGTAGCATATCGATTCCTGATGGATAACTTGAATCCTTTAATATTA
AATTATGTGAAAAGGAAGAGGTTCCATCAAATATGTCTTGAGGAGATGCCCTGGAAAGCTCAGA
TGAACCTTTATCTGGCAAATGCACACTTCAACCTGCTTTTAACGAAGCTAGGGGAGCGTATGAA
GTTGAAATATGGCACCTCACCTGTGATGGTCAGTTTCCGATCATGTGATCCTAGTATGTTCTCA
CTGTATAATTCAGGAACAGTATTACCAACAGGAAAACTGACTCTAGAAAACTATAAAGTGATGC
TTGATTTCCTTCTTACAGCTAAAAAAAGAAAGGCCCACTTACCGTCAGATGCTGAAGAATTCTC
GGCATTTCTTAATTCCAAAACGAGTGATGACGATGTTTCCAAAACACAAACGGGTTATGAATCA
GACTCTCAGTCAGGACTCAGTGGGAAAGAAAAGGATCAATCCACCCATGTGGGTCTATTGGATC
ATGTTATGAAGATCTTTCTCTATTGCAGGAGAGCAATGGTTCTGGCTCATCGTGGGGGCTATTG
GACTCTGCTTCAAAACTGCTGTAGGGCCCTTTGGAATTTTACCCAGGAGCTACAGATACTTCAT
AAACAAGCGGTGGATCTGTATAAAACATTTCCCGTTAGCCAGGATGGCTTTCTCTGTATCTCTG
TTTTACCATTCTATTTGGGAGCAGAATTACTTATTGACATGTTAATAGAACTACAAAATATCAA
TTCTATTAAGACTATTGAAGACAAAGGAGAGTTCAGTGTTCCAAGTTGCTATGGAAATATTAAA
AATGACAGCGGTGGTTCTAGCCTTACTTTTGAGGATCCTTTGGATGATGTAAATGTAGTTGATT
TGAAATGGATCCACGACTTCGTATTAAAATCTCTGGAACTTTTATACCAAGTGGAAAAATGGGA
AACGCTAGTATCACTTGCCATTCAGTTCAATACAATTTCACATGAGAGATATACAGAGCAAGTG
ACACCACTCCTGGTGTATGCACAGCGCCAGCTACTTCTACGAATATCCAAGTTCAAGGACCCAG
ATATTACCCAACAGCCTTGTGTGAGATATGAGGCTGAGCATGAACAAAAGATTACCTGTCGAAA
TTTCATTGGGAAACAACTCAAGATTAATCCTCCAACCAGTGAAGTGACAGCAGCTGGAAACCAC
ACAGATTTCCTTAAAAAGCTCATCTCTTCAGAATACAGCAAAGCCAAAGGGCTCCTCTGTGTGC
CCGTGGACGTGACAGACACTTTGAGATGTTTTAGAGAGACCTTGGAAAAATCCAAATATCATAA
CAGATCAATCCGACACAGCAGAAAGTTGCTTTCCTTATTTCTTGCACAGACACAAGATGTTCTT
CAAACCAGCAATCAAAGGAGTCTTAACGTTCAGGCGTTGCATGAANCTGGAAATCTTCTCGTCT
TCGCACAAAAGAAAAGGGATGCTTTTAAATGCTGGCGTCAAGCTCTTGACAGCATATTCAGGAA
AGAAGACGTGCTCCGTACGTGGAAGGAGTTTGGCGCCTCCCTCACCCATGCCACCCACAGCTCT
TCACCTCCGGTTTCCAAAGACTACAGTGAGGAGTTTCTGGCGAAAGTTGGCATTTGGGGATGTT
TGCAAGGAGCGGTGATATCTGCAAAGATTGCACAATTTATTATGACAGTGGATGTTGAAAAGAG
AATCAACTGTTGCCTCTTGTCTGCATTACTCTTTCAGGGTTTGCTCAGAACCACCCTTCCTCAT
CCCAAAGCTGAACGTTGCTATGCTCAGTATGAAATCCTTCAGCTACTCCCCGGCCTTGAGCTCT
TCTCTGACAGATACCGGGCTGACATCTGCTCAGTGGTCGCAAGTCTGTATTACGTTATACGTGA
ACTGCACTTTGCTGAGCAGAATCTCATAATTCTACCTCTCCTCGCATTGTACCAATATTTTGTT
TCTGGAGTTTGCCAAGACCTAGTCAGAAACCTAGAAGCAAGAATTCTCAAGATAGAAGTTCTTA
TAGACTTAAGATTCTTTTCCGAAGCCTTTCACGAGATATCTCAGATTTTTTATGGGAAAAACAT
GCCTTCCTCAGTAACTGCTGGCTGTAAAGCTATTGGAAAAATGAAGATATTTCAATCCTTTGAC
TCTGGGAAACCCCTTACTAGTAAAGAAAATATACAGGCAATCGATGAACTAATAAACAAAGGCT
TGCCTCTCATGCTGGTTACAATCGGTCAGCAACATCTCTTAAATAAGTTTTCTTTCGTTAAAGC
GTACTTTTTCATAAAAGTGGCTGCAACAATAAATTGTGTCCCAGAACGTAGGATGAAAACAGTC
TGCCATGGACTCACTAATGAGAAAAGCAGAGGAAACCTCTCAAGCCTGAAAGATCTGCATTTAA
AGGATGAAGGAGGCTCACTTACTCCGCTTGCGAAGATGAAGGAGGACGTCACTCTTAGCGCACT
AAAGTCACTTTTACTGACAGAAGCTGAAGACAGGCTCAACATCCTTGCGTCAGAGATGGAGCAC
CCAGACGACAAGGACCTCGCTCAGTGTTCAGCGGGCGACTTGGAGATGATGGTGAAGGTCAGGC
TGCAGCTGGCTGCCATCGCCCTGCAGAGACACCAGCGGCATACAGGCAATGCCGCGATCCTATT
CTCCACACTTAAACTTCTCCAGGATTCAAAACTTTTTAAAAAGAAGGTAGTAGAAGATGACACA
GGAGGTTATGCCGCTGAACATGAAGATGATAATGAGTTTTTAGATCCCACTTCCCTAAATTCTC
GAGAATATTTCAACATTCACCTATGGTTGAGGTGCCGCTTAGCATTGGTGACTGCGTTCGTTGC
ACAGATTCGTGGCATTGGAATCGTGAAAGAAGATGATGTAACAGATTACATGAGCCTCATCAAT
GCCATGTGTGTGGAGGCAAAAAGTGCAGGCGACAGGGAGCTACAGGCTGAATTGCTGATGCAAG
CTGTGATCATTGGCCTACAAGAAAAGCATTTAAAAGCAGACATCAGAAAAAACCTTCAGGACAT
AATACAGTTGCTTGAAGGACATGAGTTTATTTCTCCTCGATCTCACTTAACCCTGGTGAGAAGC
ATGCTTTTGCTGGATGACTTAACAAAAGCTGAGAAATTCAAGGAAACTCCCTCTTCAAAAACAG
AAAAATTGTGTTTGTTGACTCAGTCTCACAACATTCTTATTGAACAGATGCTGACTTTTGGAGA
AACCATTGAATTTCCTTTATCAAACATGGACTATGCAAGTCCATTACTGCCTTTGAAAAATATC
TATCTTCCTCATGTCATGTTACTGGCCAAAACAAAAATGAGAATTGGGCATACAGTGGCCAAGC
AAACATATACGAGTAAAAGGAGGGATCCCTCGAAGTGGTTACCCGCCCTTCACCTTTTTGAAGT
CGCTCTGAAGCTTGCTAAGACATCAGGAGCAGAAGAGCATGAGGTAGAAGCTGAAATCTGTTTT
CAGAAAGGCAAAATAGAATGTCAAATGCTGATGGAAGAGAAATCTCCAATTTTGCAACTTAAGA
GTTTATTTGAAGCTATACAACTGAGCCTGAGACATGATCAAAACTCAAGGTTGATAAGAGACGC
CTACCTAGAAATAGCCCTGCTCTTTTTACACATGAGGAAGCCAAAGAGAAAACTTTCAGCATCA
CCTGTAACCCTTAAGGCTGTTCCCAGAAGGCGTAGTTCTGTTAAAGAACCCACAGTAAACAAAT
CTGAAATGTACAGTTTATTTGCCTGGATTGCAATAAGAGCTGCTATGCAGGTCAGCGAGGCTGT
GCTGGCAATTAACCTGCTTATTGGAAAGAAGAATGCTAGAACTGATAAAGTTAGCCAAGGGGCA
TTACCACATATCCCAGAATTTGCCACCATGGATCTTTTGTCTTCATACACAGATTATTTGCGTG
ATAACTACCAAGTCGTCTTCCAGACGGGCTATACAGACTCTTGCCCAAGTGATGATACATATGA
GAATGCAGATGCCGGAACAAAGCCCCCATCTAAAGTGGATATTACATGGATTCTTCTGCTGCGC
TACTATATTCACCTGCAAAGAATTAATAATGTGAGCAAGCTGCTAGCCTCTCGGAAGCCAGGAT
CCGGAATGTCTTTGCCAGATGACACACTTCTGACTTCTCTTTTCAACTCTGGGTTCATGCTGCG
CCAAAAAGAAATGCATTTTTTCCTGAAAAGATTCTTACAGCTGTACTCTGCCTCTTGTATTGAT
GAATTTCCAATAGAACTACTTCAAGTCACGGAGAATCTGTCTTTTTCAGAAAAAATCATATATG
ACTCATCAAGCAAGTCACGTCATGAAAGTTCTTTATACTCCGATTCATCATTAAAGGTTTTTAC
CAGCCCATCATACGGAGAGGTGGTATCATCGGTCATGGCAACACAAGCTTTAAACAAAGAACTT
TGCTTTCAGTGGTACATTCCTCCCCTGGAAAAACCTCCAAAGGAAACAGAACCTATGGTATGTG
TTATTGTTTATGCGTATAATATGAAGCCCCTGAATGTTTCAGATGTTGCATCTACTGCTTACAG
CAGTGTATACACTGGCTCTTTCTGGCTTCCACTGAACAGAGTTATTTCAATTCATGAGAAACTA
TCTAACCTTACGCAAATTGCTGAAATATCATTGCCAACACCTCCTAAAGTTGCTTCAAATGAAA
ATGTATCCGAAGTACAAGAAACAGAAGAGAAACCAGTTGATAAAGAAATGGAACACATGATTAT
TGACTGTTGCTCTGAAATTGTGTCTTTGTTCTTCATGGATGGAGAGAAACCACCACTGTCTGAG
GTCCCATTTGATATTTCGCTGCCATCTATATTCGATCTTGAGAGACTATTTGATCTTGCTAATG
GCTGTATCATATCAGGAGGAAGCCTTTTCGACTGGGTAGTGTCGATTATTCCCTGAACATCCTT
TATATGTTATCCTCATAAAGGATTTAATTGTTACTATTCTTCTTGGTTTGAAATAAATCTTTGG
AACTATCCTCTTATAACAAAATAAAATTGTTTTCCTGCACAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_020948389	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000040348.2
	ENSSSCP00000081118
	ENSSSCP00000081118.1
	ENSSSCP00070003659.1

RefSeq Acc Id:

XP_020948389 ⟸ XM_021092730

- UniProtKB:

A0A4X1SMD8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAHGTCSFSPSNLSPTSVSPPGPPPTPPPTSTAISKSPLESKASSLSPVPHSTCHEDSLPLAV
FYGPLDAKNPLLVSCEKEIQELLGFMKRKKALATTEEQKHEFHRRCATSLFNIWTKYAPRLPAA
YYNEKLLKVGDSLCEMKEYKLALLQCYGRYLQQFTVNFDEHKADVNEFKAVFFPKGLGDKTAAQ
TFHALNGKNICSYQLVCDSDTNLQNRESVIHCLHILSSLRLIMQAALPQEHLCWIIFNGTIYIY
TICRKLMIIGHSSKALEYLLWASMCMESSVPLLAVRYLTWRASLYTAVCQCYYDCHAGVHGEAF
ARRALAKIDELRQLELMSSSPSQEESRRCYREAAIKMAVMIFKRGVFESRRKNKSLFRPKIRVN
LREAQTLQWPRTVTERLLDEMFDSTASRFLAVLEALSDSNRRTLQTGPVVTEEVEVRDVVSELF
IAGRELLITSNTGAEGTLDFPKSSLLPLIIQRKNVISVDAAVKFIKLAFTYEEWSLFESSAGQL
IDFLQRQDDPESKKAEKELLLLIAIEPLINVKRNKGLIFPLENFKEGQVYCKKIAFHDTCGKAC
GHSEDVFLLATTLYSCVCDSPQDAQPDKEIVVDTIMFLWQKCKLGLQRLNVARNDSAKLTQKIS
TNKWVYLLWQINEVIQCYNMENIDVVVVAEVTLRLSEILESLGNPRRKLKKSLDTPLKDGTNEL
LGTQKGSMETLPILKKKPEEQLLLAYELLDKAIDGVNLNCMLTALPNGSSVVDHCYAMHTNYVD
GDLCKPVTPNSFMMDLHLELIQAQHRIAVLLLDQLQVLQTPTVRKNVSTTGPEKLKNSGSPDCF
TELSVMNKIRKNKLSKAIYLMQKALLMFEKDATCSSVHNFLMEAYSLIEKTEAEQRILYSYQRY
LEITKRRKSRVPPPPILLARTHCSVTLKPAPFISDVKVSWYCILGCKAKGSYGKVRLNNNHLPN
SGEAIPADGKSIFEVKGLETNEKYIFAVAAYCSNGKLIGDAVGETTKPILVYPPLSAVTTRMLL
TQVAYQIGNYQLAKKVFSPVWDYFVVSPPQDDQSIVCLSNIMTITQRRLHSDILAETSSILLNL
FLRNIFVTSDIKIKEEHLFCDNIKGNEIFPSQQIARLTECERVLVALELSNYLNDSTYALQAVT
QCYGLLAPIIYHNIVLVPVVQILIKCIVVLQGLPNIIHSKKHIASFESVQHMIACCIFYITKIL
RSWKEYDLAVAIINYGKKMLDITSGCKSLFGAAEHEEVQDEGSLKKSSKTKKPQQILLPEKINE
QLVLLETHLLKLTKQYVTTELSGAEDPIFLYPIVLNWSVKSAVKEVMKFKQRPRFLEFFTQVML
KCMNDEKFQIMVEITNPVHDFLKRRNESLLGIKKMKCKEGTWSKKAAKPLQKFSAAVLEIGRVN
RYDAKKKKXRKETLREFLNKNPCVSEMGEQERNKRTDVRKVAYRFLMDNLNPLILNYVKRKRFH
QICLEEMPWKAQMNLYLANAHFNLLLTKLGERMKLKYGTSPVMVSFRSCDPSMFSLYNSGTVLP
TGKLTLENYKVMLDFLLTAKKRKAHLPSDAEEFSAFLNSKTSDDDVSKTQTGYESDSQSGLSGK
EKDQSTHVGLLDHVMKIFLYCRRAMVLAHRGGYWTLLQNCCRALWNFTQELQILHKQAVDLYKT
FPVSQDGFLCISVLPFYLGAELLIDMLIELQNINSIKTIEDKGEFSVPSCYGNIKNDSGGSSLT
FEDPLDDVNVVDLKWIHDFVLKSLELLYQVEKWETLVSLAIQFNTISHERYTEQVTPLLVYAQR
QLLLRISKFKDPDITQQPCVRYEAEHEQKITCRNFIGKQLKINPPTSEVTAAGNHTDFLKKLIS
SEYSKAKGLLCVPVDVTDTLRCFRETLEKSKYHNRSIRHSRKLLSLFLAQTQDVLQTSNQRSLN
VQALHEXGNLLVFAQKKRDAFKCWRQALDSIFRKEDVLRTWKEFGASLTHATHSSSPPVSKDYS
EEFLAKVGIWGCLQGAVISAKIAQFIMTVDVEKRINCCLLSALLFQGLLRTTLPHPKAERCYAQ
YEILQLLPGLELFSDRYRADICSVVASLYYVIRELHFAEQNLIILPLLALYQYFVSGVCQDLVR
NLEARILKIEVLIDLRFFSEAFHEISQIFYGKNMPSSVTAGCKAIGKMKIFQSFDSGKPLTSKE
NIQAIDELINKGLPLMLVTIGQQHLLNKFSFVKAYFFIKVAATINCVPERRMKTVCHGLTNEKS
RGNLSSLKDLHLKDEGGSLTPLAKMKEDVTLSALKSLLLTEAEDRLNILASEMEHPDDKDLAQC
SAGDLEMMVKVRLQLAAIALQRHQRHTGNAAILFSTLKLLQDSKLFKKKVVEDDTGGYAAEHED
DNEFLDPTSLNSREYFNIHLWLRCRLALVTAFVAQIRGIGIVKEDDVTDYMSLINAMCVEAKSA
GDRELQAELLMQAVIIGLQEKHLKADIRKNLQDIIQLLEGHEFISPRSHLTLVRSMLLLDDLTK
AEKFKETPSSKTEKLCLLTQSHNILIEQMLTFGETIEFPLSNMDYASPLLPLKNIYLPHVMLLA
KTKMRIGHTVAKQTYTSKRRDPSKWLPALHLFEVALKLAKTSGAEEHEVEAEICFQKGKIECQM
LMEEKSPILQLKSLFEAIQLSLRHDQNSRLIRDAYLEIALLFLHMRKPKRKLSASPVTLKAVPR
RRSSVKEPTVNKSEMYSLFAWIAIRAAMQVSEAVLAINLLIGKKNARTDKVSQGALPHIPEFAT
MDLLSSYTDYLRDNYQVVFQTGYTDSCPSDDTYENADAGTKPPSKVDITWILLLRYYIHLQRIN
NVSKLLASRKPGSGMSLPDDTLLTSLFNSGFMLRQKEMHFFLKRFLQLYSASCIDEFPIELLQV
TENLSFSEKIIYDSSSKSRHESSLYSDSSLKVFTSPSYGEVVSSVMATQALNKELCFQWYIPPL
EKPPKETEPMVCVIVYAYNMKPLNVSDVASTAYSSVYTGSFWLPLNRVISIHEKLSNLTQIAEI
SLPTPPKVASNENVSEVQETEEKPVDKEMEHMIIDCCSEIVSLFFMDGEKPPLSEVPFDISLPS
IFDLERLFDLANGCIISGGSLFDWVVSIIP

hide sequence

Ensembl Acc Id:

ENSSSCP00000040348 ⟸ ENSSSCT00000045047

Ensembl Acc Id:

ENSSSCP00000081118 ⟸ ENSSSCT00000103885

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000033574	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00070002353	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000045047.2	UniProtKB/TrEMBL
	ENSSSCT00000103885	ENTREZGENE
	ENSSSCT00000103885.1	UniProtKB/TrEMBL
	ENSSSCT00070004443.1	UniProtKB/TrEMBL
InterPro	CFAP54	UniProtKB/TrEMBL
NCBI Gene	CFAP54	ENTREZGENE
PANTHER	CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 54	UniProtKB/TrEMBL
	CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 54	UniProtKB/TrEMBL
Pfam	DUF4486	UniProtKB/TrEMBL
UniProt	A0A287A8T7_PIG	UniProtKB/TrEMBL
	A0A4X1SMD8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8W4FPJ3_PIG	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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