LOC100523945 (pregnancy-associated glycoprotein 2) - Rat Genome Database

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Gene: LOC100523945 (pregnancy-associated glycoprotein 2) Sus scrofa
Analyze
Symbol: LOC100523945
Name: pregnancy-associated glycoprotein 2
RGD ID: 14033077
Description: ENCODES a protein that exhibits aspartic-type endopeptidase activity (inferred); INVOLVED IN proteolysis (inferred); FOUND IN extracellular region (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1210,514,058 - 10,522,916 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.229,986,509 - 9,995,221 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
proteolysis  (IBA,IEA)

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in LOC100523945
658 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system hemolymphoid system
High
Medium
Low
Below cutoff 1 1 1

Sequence


Reference Sequences
RefSeq Acc Id: XM_005660830   ⟹   XP_005660887
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1210,514,058 - 10,522,916 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005660887 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000013931.4
  ENSSSCP00000051753
  ENSSSCP00000051753.2
Reference Protein Sequences
RefSeq Acc Id: XP_005660887   ⟸   XM_005660830
- UniProtKB: A0A287B618 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Peptidase A1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000013097 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000014317.4 UniProtKB/TrEMBL
  ENSSSCT00000049347 ENTREZGENE
  ENSSSCT00000049347.2 UniProtKB/TrEMBL
Gene3D-CATH 2.40.70.10 UniProtKB/TrEMBL
  6.10.140.60 UniProtKB/TrEMBL
InterPro Aspartic_peptidase_A1 UniProtKB/TrEMBL
  Aspartic_peptidase_AS UniProtKB/TrEMBL
  Aspartic_peptidase_N UniProtKB/TrEMBL
  PEPTIDASE_A1 UniProtKB/TrEMBL
  Peptidase_aspartic_dom_sf UniProtKB/TrEMBL
NCBI Gene LOC100523945 ENTREZGENE
PANTHER PEPSIN A-5 UniProtKB/TrEMBL
  PTHR47966 UniProtKB/TrEMBL
Pfam A1_Propeptide UniProtKB/TrEMBL
  Asp UniProtKB/TrEMBL
PRINTS PEPSIN UniProtKB/TrEMBL
PROSITE ASP_PROTEASE UniProtKB/TrEMBL
  PEPTIDASE_A1 UniProtKB/TrEMBL
Superfamily-SCOP SSF50630 UniProtKB/TrEMBL
UniProt A0A287B618 ENTREZGENE, UniProtKB/TrEMBL
  F1RIC9_PIG UniProtKB/TrEMBL