KCTD2 (potassium channel tetramerization domain containing 2) - Rat Genome Database

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Gene: KCTD2 (potassium channel tetramerization domain containing 2) Sus scrofa
Analyze
Symbol: KCTD2
Name: potassium channel tetramerization domain containing 2
RGD ID: 14028165
Description: ENCODES a protein that exhibits protein-containing complex binding (inferred); INVOLVED IN protein homooligomerization (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BTB/POZ domain-containing protein KCTD2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl126,226,376 - 6,241,318 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1126,226,380 - 6,241,363 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2126,238,863 - 6,253,256 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
KCTD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl126,226,376 - 6,241,318 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1126,226,380 - 6,241,363 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2126,238,863 - 6,253,256 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KCTD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381775,032,571 - 75,065,886 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1775,032,575 - 75,065,889 (+)EnsemblGRCh38hg38GRCh38
GRCh371773,028,666 - 73,061,981 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361770,554,874 - 70,573,576 (+)NCBINCBI36Build 36hg18NCBI36
Build 341770,554,873 - 70,573,574NCBI
Celera1769,636,216 - 69,648,576 (+)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1768,453,047 - 68,471,555 (+)NCBIHuRef
CHM1_11773,107,758 - 73,126,460 (+)NCBICHM1_1
T2T-CHM13v2.01775,924,318 - 75,957,335 (+)NCBIT2T-CHM13v2.0
Kctd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911115,310,915 - 115,322,100 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11115,310,954 - 115,322,100 (+)EnsemblGRCm39 Ensembl
GRCm3811115,420,094 - 115,431,274 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11115,420,128 - 115,431,274 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711115,281,440 - 115,292,588 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611115,236,240 - 115,247,362 (+)NCBIMGSCv36mm8
Celera11127,169,969 - 127,197,343 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1180.84NCBI
Kctd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810101,162,091 - 101,173,721 (+)NCBIGRCr8
mRatBN7.210100,663,013 - 100,674,756 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10100,662,884 - 100,674,336 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.010103,972,700 - 103,984,398 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10103,972,888 - 103,984,402 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010104,294,907 - 104,306,268 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410105,499,682 - 105,510,985 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1099,238,524 - 99,249,880 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
Kctd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555531,899,534 - 1,917,542 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555531,899,533 - 1,918,534 (+)NCBIChiLan1.0ChiLan1.0
KCTD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21991,085,869 - 91,104,659 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11795,908,907 - 95,927,729 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01768,994,314 - 69,012,221 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11774,549,728 - 74,568,358 (+)NCBIpanpan1.1PanPan1.1panPan2
KCTD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.195,417,352 - 5,432,819 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl95,419,966 - 5,444,470 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha96,096,207 - 6,111,427 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.096,087,644 - 6,103,110 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl96,087,644 - 6,115,640 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.196,125,515 - 6,140,744 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.096,235,864 - 6,251,080 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.096,295,990 - 6,311,454 (-)NCBIUU_Cfam_GSD_1.0
Kctd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056026,040,141 - 6,052,103 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936594302,366 - 370,878 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936594359,856 - 373,499 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCTD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11646,606,832 - 46,625,366 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1646,609,675 - 46,625,289 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607717,392,424 - 17,410,766 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kctd2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248014,863,232 - 4,878,504 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248014,863,312 - 4,877,690 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in KCTD2
295 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000048742   ⟹   ENSSSCP00000037764
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl126,226,376 - 6,241,318 (-)Ensembl
RefSeq Acc Id: XM_021066666   ⟹   XP_020922325
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1126,226,380 - 6,241,363 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020922325   ⟸   XM_021066666
- UniProtKB: A0A4X1V0J7 (UniProtKB/TrEMBL),   A0A287A214 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000037764   ⟸   ENSSSCT00000048742
Protein Domains
BTB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000031958 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025028828 UniProtKB/TrEMBL
  ENSSSCG00030003687 UniProtKB/TrEMBL
  ENSSSCG00035071765 UniProtKB/TrEMBL
  ENSSSCG00040059712 UniProtKB/TrEMBL
  ENSSSCG00045037152 UniProtKB/TrEMBL
  ENSSSCG00050078916 UniProtKB/TrEMBL
  ENSSSCG00055020403 UniProtKB/TrEMBL
  ENSSSCG00060004789 UniProtKB/TrEMBL
  ENSSSCG00065071157 UniProtKB/TrEMBL
  ENSSSCG00070021641 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000048742 ENTREZGENE
  ENSSSCT00000048742.3 UniProtKB/TrEMBL
  ENSSSCT00025039148.1 UniProtKB/TrEMBL
  ENSSSCT00030004805.1 UniProtKB/TrEMBL
  ENSSSCT00030004821.1 UniProtKB/TrEMBL
  ENSSSCT00035097056.1 UniProtKB/TrEMBL
  ENSSSCT00040081180.1 UniProtKB/TrEMBL
  ENSSSCT00045064074.1 UniProtKB/TrEMBL
  ENSSSCT00045064103.1 UniProtKB/TrEMBL
  ENSSSCT00050108890.1 UniProtKB/TrEMBL
  ENSSSCT00050108891.1 UniProtKB/TrEMBL
  ENSSSCT00055040059.1 UniProtKB/TrEMBL
  ENSSSCT00055040145.1 UniProtKB/TrEMBL
  ENSSSCT00060005952.1 UniProtKB/TrEMBL
  ENSSSCT00060005955.1 UniProtKB/TrEMBL
  ENSSSCT00065097779.1 UniProtKB/TrEMBL
  ENSSSCT00070042990.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.2000 UniProtKB/TrEMBL
  6.10.140.750 UniProtKB/TrEMBL
InterPro BTB/POZ_dom UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
  T1-type_BTB UniProtKB/TrEMBL
NCBI Gene KCTD2 ENTREZGENE
PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN KCTD2 UniProtKB/TrEMBL
  POTASSIUM CHANNEL TETRAMERISATION DOMAIN CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam BTB_2 UniProtKB/TrEMBL
SMART BTB UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/TrEMBL
UniProt A0A287A214 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1V0J7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1JFN6_PIG UniProtKB/TrEMBL
VGNC ID VGNC:89398 ENTREZGENE