DNAJC24 (DnaJ heat shock protein family (Hsp40) member C24) - Rat Genome Database

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Gene: DNAJC24 (DnaJ heat shock protein family (Hsp40) member C24) Sus scrofa
Analyze
Symbol: DNAJC24
Name: DnaJ heat shock protein family (Hsp40) member C24
RGD ID: 14024815
Description: ENCODES a protein that exhibits ATPase activator activity (inferred); ferrous iron binding (inferred); zinc ion binding (inferred); INVOLVED IN positive regulation of ATP-dependent activity (ortholog); ASSOCIATED WITH aniridia (ortholog); aniridia 1 (ortholog); Denys-Drash syndrome (ortholog); FOUND IN actin cytoskeleton (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dnaJ homolog subfamily C member 24
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl229,305,417 - 29,365,184 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1229,305,688 - 29,365,244 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2231,813,001 - 31,872,535 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
actin cytoskeleton  (IEA,ISO)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:30032202  


Genomics

Comparative Map Data
DNAJC24
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl229,305,417 - 29,365,184 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1229,305,688 - 29,365,244 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2231,813,001 - 31,872,535 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DNAJC24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381131,369,860 - 31,432,835 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1131,369,840 - 31,432,835 (+)EnsemblGRCh38hg38GRCh38
GRCh371131,391,407 - 31,454,382 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361131,347,953 - 31,410,958 (+)NCBINCBI36Build 36hg18NCBI36
Build 341131,348,009 - 31,410,957NCBI
Celera1131,538,800 - 31,601,804 (+)NCBICelera
Cytogenetic Map11p13NCBI
HuRef1131,085,726 - 31,148,789 (+)NCBIHuRef
CHM1_11131,390,918 - 31,453,909 (+)NCBICHM1_1
T2T-CHM13v2.01131,505,697 - 31,568,659 (+)NCBIT2T-CHM13v2.0
Dnajc24
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392105,797,053 - 105,833,894 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2105,797,054 - 105,833,894 (-)EnsemblGRCm39 Ensembl
GRCm382105,966,708 - 106,003,549 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2105,966,709 - 106,003,549 (-)EnsemblGRCm38mm10GRCm38
MGSCv372105,806,874 - 105,843,706 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362105,767,556 - 105,804,388 (-)NCBIMGSCv36mm8
Celera2107,182,660 - 107,219,678 (-)NCBICelera
Cytogenetic Map2E3NCBI
cM Map255.46NCBI
Dnajc24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83112,905,369 - 112,940,741 (-)NCBIGRCr8
mRatBN7.2392,450,631 - 92,486,004 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl392,450,639 - 92,485,901 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx395,946,385 - 95,981,664 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03104,545,315 - 104,580,594 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03102,373,395 - 102,408,667 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0396,025,388 - 96,065,765 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl396,025,396 - 96,065,711 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03102,647,266 - 102,688,215 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4391,438,714 - 91,473,974 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera391,504,094 - 91,534,740 (-)NCBICelera
Cytogenetic Map3q33NCBI
Dnajc24
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554769,743,736 - 9,777,164 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554769,742,909 - 9,780,321 (+)NCBIChiLan1.0ChiLan1.0
DNAJC24
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2933,580,059 - 33,643,488 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11133,584,539 - 33,647,580 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01131,333,447 - 31,396,852 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11131,223,109 - 31,286,055 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1131,223,109 - 31,286,055 (+)Ensemblpanpan1.1panPan2
DNAJC24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11835,935,826 - 36,024,062 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1835,639,011 - 36,024,005 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1835,593,043 - 35,672,828 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01836,588,058 - 36,666,992 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1836,282,375 - 36,667,220 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11836,161,212 - 36,240,856 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01835,742,639 - 35,822,596 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01836,377,778 - 36,457,694 (-)NCBIUU_Cfam_GSD_1.0
Dnajc24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494733,164,061 - 33,215,757 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365336,286,058 - 6,340,865 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365336,289,490 - 6,340,506 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAJC24
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1133,755,285 - 33,812,904 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl133,756,137 - 33,813,364 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038130,922,640 - 130,981,229 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dnajc24
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476620,235,589 - 20,282,145 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476620,235,556 - 20,293,952 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in DNAJC24
1803 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000032359   ⟹   ENSSSCP00000020238
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl229,305,417 - 29,365,141 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000059636   ⟹   ENSSSCP00000044614
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl229,305,695 - 29,365,184 (-)Ensembl
RefSeq Acc Id: XM_013994473   ⟹   XP_013849927
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1229,305,688 - 29,365,164 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013994474   ⟹   XP_013849928
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1229,305,688 - 29,365,242 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021085296   ⟹   XP_020940955
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1229,305,688 - 29,365,244 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020940955   ⟸   XM_021085296
- Peptide Label: isoform X2
- UniProtKB: A0A8D0MDZ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013849928   ⟸   XM_013994474
- Peptide Label: isoform X1
- UniProtKB: I3L880 (UniProtKB/TrEMBL),   A0A4X1SXG8 (UniProtKB/TrEMBL),   A0A8D0MDZ6 (UniProtKB/TrEMBL),   A0A8D1B6R3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013849927   ⟸   XM_013994473
- Peptide Label: isoform X1
- UniProtKB: I3L880 (UniProtKB/TrEMBL),   A0A4X1SXG8 (UniProtKB/TrEMBL),   A0A8D0MDZ6 (UniProtKB/TrEMBL),   A0A8D1B6R3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000044614   ⟸   ENSSSCT00000059636
Ensembl Acc Id: ENSSSCP00000020238   ⟸   ENSSSCT00000032359
Protein Domains
DPH-type MB   J


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000026083 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015002909 UniProtKB/TrEMBL
  ENSSSCG00025014642 UniProtKB/TrEMBL
  ENSSSCG00030000453 UniProtKB/TrEMBL
  ENSSSCG00035070948 UniProtKB/TrEMBL
  ENSSSCG00040053500 UniProtKB/TrEMBL
  ENSSSCG00045036806 UniProtKB/TrEMBL
  ENSSSCG00050014558 UniProtKB/TrEMBL
  ENSSSCG00060051472 UniProtKB/TrEMBL
  ENSSSCG00065039523 UniProtKB/TrEMBL
  ENSSSCG00070004559 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000032359 ENTREZGENE
  ENSSSCT00000032359.3 UniProtKB/TrEMBL
  ENSSSCT00000059636.2 UniProtKB/TrEMBL
  ENSSSCT00015003655.1 UniProtKB/TrEMBL
  ENSSSCT00025019524.1 UniProtKB/TrEMBL
  ENSSSCT00030000642.1 UniProtKB/TrEMBL
  ENSSSCT00035095872.1 UniProtKB/TrEMBL
  ENSSSCT00040072298.1 UniProtKB/TrEMBL
  ENSSSCT00045063370.1 UniProtKB/TrEMBL
  ENSSSCT00050019659.1 UniProtKB/TrEMBL
  ENSSSCT00060070060.1 UniProtKB/TrEMBL
  ENSSSCT00065054022.1 UniProtKB/TrEMBL
  ENSSSCT00070008607.1 UniProtKB/TrEMBL
  ENSSSCT00070008617.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.110 UniProtKB/TrEMBL
  3.10.660.10 UniProtKB/TrEMBL
InterPro DnaJ_domain UniProtKB/TrEMBL
  DNAJC24 UniProtKB/TrEMBL
  J_dom_sf UniProtKB/TrEMBL
  Znf_DHP UniProtKB/TrEMBL
  Znf_DHP_sf UniProtKB/TrEMBL
KEGG Report ssc:100515252 UniProtKB/TrEMBL
NCBI Gene DNAJC24 ENTREZGENE
PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 24 UniProtKB/TrEMBL
  PTHR45255 UniProtKB/TrEMBL
Pfam DnaJ UniProtKB/TrEMBL
  zf-CSL UniProtKB/TrEMBL
PRINTS JDOMAIN UniProtKB/TrEMBL
PROSITE DNAJ_2 UniProtKB/TrEMBL
  ZF_DPH UniProtKB/TrEMBL
SMART DnaJ UniProtKB/TrEMBL
Superfamily-SCOP SSF144217 UniProtKB/TrEMBL
  SSF46565 UniProtKB/TrEMBL
UniProt A0A287AL34_PIG UniProtKB/TrEMBL
  A0A4X1SW16_PIG UniProtKB/TrEMBL
  A0A4X1SXG8 ENTREZGENE
  A0A8D0MDZ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1B6R3 ENTREZGENE, UniProtKB/TrEMBL
  I3L880 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1SXG8 UniProtKB/TrEMBL
VGNC ID VGNC:99634 ENTREZGENE