LOC100627222 (zinc finger protein 596) - Rat Genome Database

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Gene: LOC100627222 (zinc finger protein 596) Sus scrofa
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Symbol: LOC100627222 (Ensembl: ZNF596)
Name: zinc finger protein 596
RGD ID: 13990247
Description: ENCODES a protein that exhibits DNA binding (inferred); metal ion binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger protein 705A; ZNF596
RGD Orthologs
Human
Bonobo
Dog
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1012,510,547 - 12,528,968 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11012,497,216 - 12,529,040 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21014,945,633 - 14,976,523 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC100627222
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1012,510,547 - 12,528,968 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11012,497,216 - 12,529,040 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21014,945,633 - 14,976,523 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF596
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388232,137 - 247,340 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8232,137 - 264,703 (+)EnsemblGRCh38hg38GRCh38
GRCh378182,137 - 197,340 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368172,200 - 187,339 (+)NCBINCBI36Build 36hg18NCBI36
Build 348172,384 - 187,338NCBI
Celera8152,397 - 167,535 (+)NCBICelera
Cytogenetic Map8p23.3NCBI
HuRef826,712 - 41,833 (+)NCBIHuRef
CHM1_18182,033 - 197,202 (+)NCBICHM1_1
T2T-CHM13v2.0828,942 - 44,149 (+)NCBIT2T-CHM13v2.0
ZNF596
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2714,904,305 - 14,919,476 (+)NCBINHGRI_mPanPan1-v2
Mhudiblu_PPA_v087,161,986 - 7,177,298 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
ZNF596
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12537,242,384 - 37,258,399 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2537,250,775 - 37,257,199 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2537,838,844 - 37,854,137 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02537,473,873 - 37,489,165 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2537,473,961 - 37,488,675 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12537,413,384 - 37,429,126 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02537,254,915 - 37,269,907 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02537,427,360 - 37,442,650 (+)NCBIUU_Cfam_GSD_1.0
ZNF596
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1829,165 - 50,523 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605441,656,582 - 41,672,634 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in LOC100627222
1381 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005653769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005653770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005653771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013978235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013978236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013978239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013978240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013978241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013978242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021064382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021064383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021064384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002336216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002336217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FP340281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01130856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSSCT00000041717   ⟹   ENSSSCP00000037967
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1012,510,547 - 12,528,968 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000065401   ⟹   ENSSSCP00000056437
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1012,510,673 - 12,523,206 (-)Ensembl
RefSeq Acc Id: XM_005653769   ⟹   XP_005653826
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11012,511,379 - 12,529,029 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005653770   ⟹   XP_005653827
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11012,511,379 - 12,529,029 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005653771   ⟹   XP_005653828
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11012,510,540 - 12,528,938 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013978235   ⟹   XP_013833689
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11012,511,379 - 12,529,040 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013978236   ⟹   XP_013833690
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11012,511,379 - 12,529,029 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013978239   ⟹   XP_013833693
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11012,511,379 - 12,529,029 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013978240   ⟹   XP_013833694
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11012,511,379 - 12,529,040 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013978241   ⟹   XP_013833695
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11012,511,379 - 12,529,029 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013978242   ⟹   XP_013833696
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11012,497,216 - 12,529,029 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021064382   ⟹   XP_020920041
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11012,511,379 - 12,529,029 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021064383   ⟹   XP_020920042
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11012,511,379 - 12,529,040 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021064384   ⟹   XP_020920043
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11012,511,379 - 12,529,029 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002336216
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11012,511,379 - 12,529,029 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002336217
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11012,510,540 - 12,528,959 (-)NCBI
Sequence:
RefSeq Acc Id: XP_013833696   ⟸   XM_013978242
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_005653828   ⟸   XM_005653771
- Peptide Label: isoform X1
- UniProtKB: A0A8D1AGT9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013833694   ⟸   XM_013978240
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020920042   ⟸   XM_021064383
- Peptide Label: isoform X4
- UniProtKB: A0A4X1SMK4 (UniProtKB/TrEMBL),   A0A287BK30 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013833689   ⟸   XM_013978235
- Peptide Label: isoform X1
- UniProtKB: A0A8D1AGT9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020920043   ⟸   XM_021064384
- Peptide Label: isoform X6
- UniProtKB: A0A287A208 (UniProtKB/TrEMBL),   A0A4X1SN03 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013833695   ⟸   XM_013978241
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_020920041   ⟸   XM_021064382
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013833693   ⟸   XM_013978239
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013833690   ⟸   XM_013978236
- Peptide Label: isoform X4
- UniProtKB: A0A4X1SMK4 (UniProtKB/TrEMBL),   A0A287BK30 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005653826   ⟸   XM_005653769
- Peptide Label: isoform X1
- UniProtKB: A0A8D1AGT9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005653827   ⟸   XM_005653770
- Peptide Label: isoform X1
- UniProtKB: A0A8D1AGT9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000056437   ⟸   ENSSSCT00000065401
Ensembl Acc Id: ENSSSCP00000037967   ⟸   ENSSSCT00000041717
Protein Domains
C2H2-type   KRAB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000025290 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025019033 UniProtKB/TrEMBL
  ENSSSCG00030029548 UniProtKB/TrEMBL
  ENSSSCG00035058510 UniProtKB/TrEMBL
  ENSSSCG00045031045 UniProtKB/TrEMBL
  ENSSSCG00050049507 UniProtKB/TrEMBL
  ENSSSCG00065076839 UniProtKB/TrEMBL
  ENSSSCG00070002381 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000041717 ENTREZGENE
  ENSSSCT00000041717.2 UniProtKB/TrEMBL
  ENSSSCT00000065401 ENTREZGENE
  ENSSSCT00000065401.3 UniProtKB/TrEMBL
  ENSSSCT00025025816.1 UniProtKB/TrEMBL
  ENSSSCT00025025826.1 UniProtKB/TrEMBL
  ENSSSCT00030041087.1 UniProtKB/TrEMBL
  ENSSSCT00030041105.1 UniProtKB/TrEMBL
  ENSSSCT00035078303.1 UniProtKB/TrEMBL
  ENSSSCT00035078312.1 UniProtKB/TrEMBL
  ENSSSCT00045052880.1 UniProtKB/TrEMBL
  ENSSSCT00045052973.1 UniProtKB/TrEMBL
  ENSSSCT00050067346.1 UniProtKB/TrEMBL
  ENSSSCT00050067350.1 UniProtKB/TrEMBL
  ENSSSCT00065106213.1 UniProtKB/TrEMBL
  ENSSSCT00065106224.1 UniProtKB/TrEMBL
  ENSSSCT00070004519.1 UniProtKB/TrEMBL
  ENSSSCT00070004534.1 UniProtKB/TrEMBL
  ENSSSCT00070004541.1 UniProtKB/TrEMBL
  ENSSSCT00070004556.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report ssc:100627222 UniProtKB/TrEMBL
NCBI Gene LOC100627222 ENTREZGENE
PANTHER NOVEL KRAB BOX AND ZINC FINGER, C2H2 TYPE DOMAIN CONTAINING PROTEIN-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 596 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 771 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-H2C2_2 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A287A208 ENTREZGENE, UniProtKB/TrEMBL
  A0A287BK30 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SMJ5_PIG UniProtKB/TrEMBL
  A0A4X1SMK4 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SN03 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1AGT9 ENTREZGENE, UniProtKB/TrEMBL