LOC100621954 (olfactory receptor 5H8-like) - Rat Genome Database

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Gene: LOC100621954 (olfactory receptor 5H8-like) Sus scrofa
Analyze
No known orthologs.
Symbol: LOC100621954
Name: olfactory receptor 5H8-like
RGD ID: 13974627
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.113161,176,873 - 161,177,841 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213172,007,411 - 172,008,379 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in LOC100621954
144 total Variants

Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013981170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_013981170   ⟹   XP_013836624
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.113161,176,873 - 161,177,841 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013836624 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000076366
  ENSSSCP00000076366.1
  ENSSSCP00025018410.1
  ENSSSCP00030031372.1
  ENSSSCP00035027312.1
  ENSSSCP00040019806.1
  ENSSSCP00045042521.1
  ENSSSCP00055009280.1
RefSeq Acc Id: XP_013836624   ⟸   XM_013981170
- UniProtKB: A0A5G2R433 (UniProtKB/TrEMBL),   A0A8D0RN57 (UniProtKB/TrEMBL),   A0A8D0X297 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000058727 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025031876 UniProtKB/TrEMBL
  ENSSSCG00030049255 UniProtKB/TrEMBL
  ENSSSCG00035050561 UniProtKB/TrEMBL
  ENSSSCG00040035242 UniProtKB/TrEMBL
  ENSSSCG00045035241 UniProtKB/TrEMBL
  ENSSSCG00055006052 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000102698 ENTREZGENE
  ENSSSCT00000102698.1 UniProtKB/TrEMBL
  ENSSSCT00025043295.1 UniProtKB/TrEMBL
  ENSSSCT00030068688.1 UniProtKB/TrEMBL
  ENSSSCT00035067374.1 UniProtKB/TrEMBL
  ENSSSCT00040047343.1 UniProtKB/TrEMBL
  ENSSSCT00045060544.1 UniProtKB/TrEMBL
  ENSSSCT00055011721.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
  Olfactory_GPCR UniProtKB/TrEMBL
KEGG Report ssc:100621954 UniProtKB/TrEMBL
NCBI Gene LOC100621954 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR FAMILY 5 SUBFAMILY H MEMBER 33 UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A5G2R433 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0RN57 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0X297 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1EB82_PIG UniProtKB/TrEMBL
  A0A8D1J051_PIG UniProtKB/TrEMBL
  A0A8D1PNR8_PIG UniProtKB/TrEMBL