C2CD2L (C2CD2 like) - Rat Genome Database

Name: C2CD2L
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: C2CD2L (C2CD2 like) Sus scrofa

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Symbol:

C2CD2L

Name:

C2CD2 like

RGD ID:

13969875

Description:

ENCODES a protein that exhibits insulin binding (inferred); phosphatidylinositol binding (inferred); phosphatidylinositol transfer activity (inferred); INVOLVED IN positive regulation of insulin secretion involved in cellular response to glucose stimulus (ortholog); ASSOCIATED WITH CD3epsilon deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog); congenital disorder of glycosylation Ij (ortholog); FOUND IN cortical endoplasmic reticulum (inferred); cytoplasmic side of apical plasma membrane (inferred); endoplasmic reticulum-plasma membrane contact site (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

c2 domain-containing protein 2-like; phospholipid transfer protein C2CD2L

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	C2CD2L (C2CD2 like)	HGNC	EggNOG, Ensembl, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	C2cd2l (C2 calcium-dependent domain containing 2-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	C2cd2l (C2CD2-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	C2cd2l (C2CD2 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	C2CD2L (C2CD2 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	C2CD2L (C2CD2 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	C2cd2l (C2CD2 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	C2CD2L (C2CD2 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	C2cd2l (C2CD2 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	46,321,817 - 46,331,078 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	46,321,761 - 46,331,078 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	51,356,903 - 51,366,225 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

CD3epsilon deficiency (ISO)

chromosome 11 partial duplication syndrome (ISO)

congenital disorder of glycosylation Ij (ISO)

congenital myasthenic syndrome 13 (ISO)

Dwarfism (ISO)

Familial Atrial Fibrillation 14 (ISO)

immunodeficiency 17 (ISO)

immunodeficiency 18 (ISO)

immunodeficiency 19 (ISO)

inflammatory bowel disease 28 (ISO)

isolated microphthalmia 5 (ISO)

long QT syndrome 10 (ISO)

RASopathy (ISO)

schizophrenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intermembrane lipid transfer (IEA)

phospholipid transport (IEA)

positive regulation of insulin secretion involved in cellular response to glucose stimulus (IBA,IEA,ISO)

Cellular Component

cortical endoplasmic reticulum (IEA)

cytoplasmic side of apical plasma membrane (IBA,IEA)

endoplasmic reticulum-plasma membrane contact site (IEA)

membrane (IEA)

plasma membrane (IEA)

Molecular Function

insulin binding (IEA)

phosphatidylinositol binding (IBA,IEA)

phosphatidylinositol transfer activity (IBA,IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

C2CD2L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	46,321,817 - 46,331,078 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	46,321,761 - 46,331,078 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	51,356,903 - 51,366,225 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

C2CD2L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	119,102,249 - 119,118,544 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	119,102,198 - 119,118,544 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	118,977,460 - 118,989,254 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	118,483,303 - 118,493,037 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	118,483,302 - 118,493,036	NCBI
Celera	11	116,135,506 - 116,145,233 (+)	NCBI		Celera
Cytogenetic Map	11	q23.3	NCBI
HuRef	11	114,917,539 - 114,927,267 (+)	NCBI		HuRef
CHM1_1	11	118,864,397 - 118,874,130 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	119,127,131 - 119,138,918 (+)	NCBI		T2T-CHM13v2.0

C2cd2l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	44,220,534 - 44,231,579 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	44,220,534 - 44,231,582 (-)	Ensembl		GRCm39 Ensembl
GRCm38	9	44,309,237 - 44,320,282 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	44,309,237 - 44,320,285 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	44,117,320 - 44,128,365 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	44,061,210 - 44,071,141 (-)	NCBI		MGSCv36	mm8
Celera	9	41,563,858 - 41,575,016 (-)	NCBI		Celera
Cytogenetic Map	9	A5.2	NCBI
cM Map	9	24.84	NCBI

C2cd2l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	53,544,887 - 53,557,127 (-)	NCBI		GRCr8
mRatBN7.2	8	44,648,074 - 44,658,856 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	44,648,079 - 44,658,340 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	50,143,991 - 50,154,257 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	48,422,710 - 48,432,974 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	46,293,079 - 46,303,345 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	48,641,792 - 48,652,119 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	48,641,801 - 48,652,071 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	47,259,701 - 47,269,990 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	47,288,755 - 47,299,021 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	47,297,520 - 47,307,787 (-)	NCBI
Celera	8	44,234,307 - 44,244,573 (-)	NCBI		Celera
Cytogenetic Map	8	q22	NCBI

C2cd2l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	20,223,890 - 20,236,709 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955412	20,214,915 - 20,232,260 (+)	NCBI	ChiLan1.0	ChiLan1.0

C2CD2L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	119,811,525 - 119,821,896 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	120,915,226 - 120,925,593 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	113,944,939 - 113,955,296 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	117,874,533 - 117,884,442 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	117,875,077 - 117,883,581 (+)	Ensembl	panpan1.1		panPan2

C2CD2L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	14,746,613 - 14,755,952 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	14,747,208 - 14,755,925 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	14,799,654 - 14,808,590 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	14,689,970 - 14,698,925 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	14,689,974 - 14,699,207 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	14,828,022 - 14,836,974 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	14,732,039 - 14,740,991 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	14,772,426 - 14,781,368 (-)	NCBI		UU_Cfam_GSD_1.0

C2cd2l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	101,132,837 - 101,146,771 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936542	4,058,945 - 4,068,187 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C2CD2L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	110,475,073 - 110,490,431 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	110,480,738 - 110,491,508 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666043	15,543,655 - 15,559,150 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

C2cd2l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624784	14,489,478 - 14,501,175 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624784	14,489,638 - 14,498,617 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in C2CD2L
183 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	4	23	3	2	5	14	12	23	3	6	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013979464	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013979465	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000070	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK394889	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU639481	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01042246	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000016477 ⟹ ENSSSCP00000016034

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	9	46,321,817 - 46,331,078 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000064254 ⟹ ENSSSCP00000033723

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	9	46,321,817 - 46,331,078 (+)	Ensembl

RefSeq Acc Id:

XM_013979464 ⟹ XP_013834918

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	9	46,321,761 - 46,331,078 (+)	NCBI

Sequence:

show sequence

GGGACGGGGGGGCGAGCCGTGTTGTCAGTGTCAGCTCTGCGCACGCAGCCCTCCCGGAGCCGGT
GCCGGCCCGCGAGCCCCAGCGTCTCTGCAAACGAGTCCCCGCCCGGGTCCGGCGGGGCCCCCGC
CGTGGGAGGAGTCGGGCGCTGGCCGGCGACTAACCCGGGTTGGACGGCCAAACCAACCGAGGAG
GGCCCTGGGCCACGGAGAGAGGGACCCCGGCGTCGTAGCCCCCAGGAATCTCCTTTCCTGGATC
TGTGGCACCCACTAGTCCCGGGCACCAAGCCTGGGAGAGCCCCCGATCCCGCGCGCCCAGCCCC
GGGGGAGCCCGCCCCCGCCCCGCGGCCCGCCCGGGCCATGCTCCCCCGGGGCAGCCGCTGAGCC
GGAGCCGGAACCAGGACCGTAGCCCGCACAGAGCATGGATCCGGGCTGGGGGCAGCAGGACATG
GGCTGGGCGGCCCTACTGATCCTCTTCGCCGCCTCGCTGCTCACGGTGTTCGGCTGGCTGCTGC
AATATGCCCGGGGCTTGTGGCTGGCGCGGTCCCGCGGGGGCCGGGGCCCGGGACCCGCCTTAGC
TGCCGAGCCCGCCGGCTCCCTGCGGGAGCTGGGCGTGTGGCGCTCGCTGCTGCGACTGAGGGGG
ACTCGGGCTGGCGCCCCAGAGGAGCCAGGCGTCCGGGGCCTCCTGGCGTCGCTCTTCGCCTTCA
AGTCTTTTCGGGAGAACTGGCAGCGGGCTTGGGTGCGAGCGCTGAACGAGCAGGCCTGCAGGGA
TGGGAGCTCCATCCAAATCGCCTTTGAGGAGGTGCCCCAACTCCCACCCAGAGCCAGCATCAGT
CGTGTGACCTGCGTAGACCAGTCAGAGCGCACCATGGTGCTGCACTGCCAGCTCTCTGCTGAGG
AGGTGATGTTCCCAGTCTCTGTGACCCAGCAGTCCCCCGCTGCCGTCTCCATGGAGACCTACCA
CGTCACTCTGACACTGCCACCAACACAGTTGGAAGTCCACCTGGAGGAAATCCCTGGGGAGGGC
TTGCTTGTATCCTGGGCCTTTGCTGATCGCCCAGACCTCAGGCTGACGGTGCTCCCCAAGCTGC
AGGCCAGGGAGAGAGGTGAGGAGCAGGTAGAGCTGTCCACCATCGAGGAGTTGATCGAGGATGC
CATCGTCAGCACCCAGCCAGCTATGGTGGTCAACCTCAGGGCTTGCTCTGCCCCTGGGGGCCCG
ATACCCAGTGAGAAGCCAGCCACGGTGCCCCAGGCCCAGCCAGCCACCCCTAGACCTACCCGGT
TATTCCTAAGGCAGCTTCGAGCATCTAATCTGGGAAGCGAGCTGGAAGGCTCTGGGGAAGTGTG
CTGTGTGGCTGAGCTGGACGTCCCCATGCAACAGAAGTGGACCAAGCCCATGAGGGCTGGGCCT
GAGGTGGAGTGGAGCGAGGACCTGACCTTGAATCTGGGCCCCCAGAGCCAGGAGCTGACCCTCA
AAGTGCTGAGGAGTAGCAGCCGCGGAGACACTGAACTCTTGGGCCAAGCCACACTGAACGTGGG
TGCCCCTTCCAGACCACTGACCCGAAGACAGGTGTGCCCACTCACCCCTGGGCCAGGGAAAGCC
CTGGGGCAGGCGGCCACCCTGGCAGTAGAGCTTCAGTACGAGGAGGGCTCCCCCCGGAATCTGG
GCACTTCCACCCCCTCCACGCCACGCCCCAGCATCACACCTACCAAGAAGATTGAGCTGGACCG
AACCATCATGCCCGATGGCACCATTGTCACCACAGTCACCACCGTCCAGTCCCGGCCCCGGGTA
GATGGCAAATTAGACTCCCCCTCCCGCTCCCCGTCCAAGGTGGAGGTGACCGAGAAGACGACAA
CTGTGCTGAGTGAGAGCGGTGGCCCCGGCAGTACCTCCCACAGCAGCAGCCCAGGGGAGAGCCA
CCTTTCCAATGGCCTGGACCCAGTAGCAGAGACCGCGATTCGCCAGCTGACTGAGCCCAGCGGG
CGGGCAGCCAAAAAGACACCCACCAAGCGTAGCACACTCATCATCTCTGGGGTTTCCAAGGTGC
CCATTGCTCAGGACGAGTTGGCACTGTCCCTGGGCTATGCGGCATCCCTGGAAGCCTCCATGCA
GGAAGATGCAGGGACCAGCGGAGGCCCCTCCTCACCTCCCTCAGACCCACCGGCCACGTCGCCG
GGACCCCTAGATGCCCTCTCCAGTCCCACGAGTGTCCAGGAAGCAGATGAGACGACACGTTCGG
ACATTTCTGAGAGGCCCTCTGTGGATGACGTAGAGTCAGAAACGGGGTCTACTGGTGCCCTGGA
AACCCGCAGCCTCAAGGATCACAAAGTGAGCTTCCTGCGCAGCGGCACGAAGCTCATCTTCCGA
AGGAGGCCTCGGCAGAAGGAAGCTGGTCTGAGCCAATCACACGATGACCTCTCCAACACGACGG
CCACCCCCAGCGTCCGAAAGAAGGCTGGCAGCTTCTCTCGCCGTCTTATCAAGCGCTTTTCCTT
CAAATCCAAACCCAAAGCCAATGGCAACCCCAGCCCGCAACTCTGAGGGCCCTGCTCACCTCCT
GAGCTAGGAGAGGGCAGGAGTCTTCTCAGTCCCTTCCCCACACCCCCCTCAATTCCCCTTCCTG
GATTCCCAACAGCCTGGACCGGGGAAGTCCTCCGGATTCCAGGAAAGCCTGTCCACCCTGGGCC
GTGGGGCCGGTTGGAAGGGTATTTGCAGCGGGAAGCATGTGAGAGGTGGATGCCTGCCCGTTGC
TGAGGACACAGGAGAGGGCTCGGGGGGCTGGGAGCAAGAGGAGGCTCTGTCCTGGCATGCGTGG
GTGTCCCTCGGACCCACTGGCCTGCTGTTGGCACCGGCCCCTCAGAGGAGTCCCAGGGTGCTCA
GCTCCTCAGCTGATCCTTCGTCCCTTATTTATTCTCTTTTCTATTTATATGTGTGGTCCAGGAC
CCTCAGTGAACAGATAAGCGAGGGCATCTCTCCCAGGTGACCCTTCTTTCCTGTCCCAGGAGGG
TAGGCAGTTCCCTTTGGGATGGGACTCCCACACCTCCCTCAGGTCCCCACTCCGACCAGCACCA
GTGTCTGCCTCTACGGACACTGGCAGCTCCTAGAAAGCCGGGCCGGTGCCCGGGATGGGGGGCA
GGTACTCCCCACCGCCCTGCCTCCCCTTCTGCTCCTCATCCCTCCCTCCCCCTTTATTACCGTT
TTTGTACTTGATGCCTTCTCTGTGAGCAGTGGCTCTGTTTGAAGGAGGGAGCCAGGAGCCTGGT
GGGAAGCCCTCCCCAGAGAGATGGCTGTAGGGGCTTTATTTTGCAGACTGTGTGATGATAGAGC
AAGAGCAGGACTGCACCTCTGTATATTGGGAGATGATGATGTCCATTGCTGTGTGATGGCTTGG
AATTTAATTTATTAAATTAAAGTCAAATTGGAGTTTA

hide sequence

RefSeq Acc Id:

XM_013979465 ⟹ XP_013834919

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	9	46,321,761 - 46,331,078 (+)	NCBI

Sequence:

show sequence

GGGACGGGGGGGCGAGCCGTGTTGTCAGTGTCAGCTCTGCGCACGCAGCCCTCCCGGAGCCGGT
GCCGGCCCGCGAGCCCCAGCGTCTCTGCAAACGAGTCCCCGCCCGGGTCCGGCGGGGCCCCCGC
CGTGGGAGGAGTCGGGCGCTGGCCGGCGACTAACCCGGGTTGGACGGCCAAACCAACCGAGGAG
GGCCCTGGGCCACGGAGAGAGGGACCCCGGCGTCGTAGCCCCCAGGAATCTCCTTTCCTGGATC
TGTGGCACCCACTAGTCCCGGGCACCAAGCCTGGGAGAGCCCCCGATCCCGCGCGCCCAGCCCC
GGGGGAGCCCGCCCCCGCCCCGCGGCCCGCCCGGGCCATGCTCCCCCGGGGCAGCCGCTGAGCC
GGAGCCGGAACCAGGACCGTAGCCCGCACAGAGCATGGATCCGGGCTGGGGGCAGCAGGACATG
GGCTGGGCGGCCCTACTGATCCTCTTCGCCGCCTCGCTGCTCACGGTGTTCGGCTGGCTGCTGC
AATATGCCCGGGGCTTGTGGCTGGCGCGGTCCCGCGGGGGCCGGGGCCCGGGACCCGCCTTAGC
TGCCGAGCCCGCCGGCTCCCTGCGGGAGCTGGGCGTGTGGCGCTCGCTGCTGCGACTGAGGGGG
ACTCGGGCTGGCGCCCCAGAGGAGCCAGGCGTCCGGGGCCTCCTGGCGTCGCTCTTCGCCTTCA
AGTCTTTTCGGGAGAACTGGCAGCGGGCTTGGGTGCGAGCGCTGAACGAGCAGGCCTGCAGGGA
TGGGAGCTCCATCCAAATCGCCTTTGAGGAGGTGCCCCAACTCCCACCCAGAGCCAGCATCAGT
CGTGTGACCTGCGTAGACCAGTCAGAGCGCACCATGGTGCTGCACTGCCAGCTCTCTGCTGAGG
AGGTGATGTTCCCAGTCTCTGTGACCCAGCAGTCCCCCGCTGCCGTCTCCATGGAGACCTACCA
CGTCACTCTGACACTGCCACCAACACAGTTGGAAGTCCACCTGGAGGAAATCCCTGGGGAGGGC
TTGCTTGTATCCTGGGCCTTTGCTGATCGCCCAGACCTCAGGCTGACGGTGCTCCCCAAGCTGC
AGGCCAGGGAGAGAGGTGAGGAGCAGGTAGAGCTGTCCACCATCGAGGAGTTGATCGAGGATGC
CATCGTCAGCACCCAGCCAGCTATGGTGGTCAACCTCAGGGCTTGCTCTGCCCCTGGGGGCCCG
ATACCCAGTGAGAAGCCAGCCACGGTGCCCCAGGCCCAGCCAGCCACCCCTAGACCTACCCGGT
TATTCCTAAGGCAGCTTCGAGCATCTAATCTGGGAAGCGAGCTGGAAGGCTCTGGGGAAGTGTG
CTGTGTGGCTGAGCTGGACGTCCCCATGCAACAGAAGTGGACCAAGCCCATGAGGGCTGGGCCT
GAGGTGGAGTGGAGCGAGGACCTGACCTTGAATCTGGGCCCCCAGAGCCAGGAGCTGACCCTCA
AAGTGCTGAGGAGTAGCAGCCGCGGAGACACTGAACTCTTGGGCCAAGCCACACTGAACGTGGG
TGCCCCTTCCAGACCACTGACCCGAAGACAGGTGTGCCCACTCACCCCTGGGCCAGGGAAAGCC
CTGGGGCAGGCGGCCACCCTGGCAGTAGAGCTTCAGTACGAGGAGGGCTCCCCCCGGAATCTGG
GCACTTCCACCCCCTCCACGCCACGCCCCAGCATCACACCTACCAAGAAGATTGAGCTGGACCG
AACCATCATGCCCGATGGCACCATTGTCACCACAGTCACCACCGTCCAGTCCCGGCCCCGGGTA
GATGGCAAATTAGACTCCCCCTCCCGCTCCCCGTCCAAGGTGGAGGTGACCGAGAAGACGACAA
CTGTGCTGAGTGAGAGCGGTGGCCCCGGCAGTACCTCCCACAGCAGCAGCCGGGAGAGCCACCT
TTCCAATGGCCTGGACCCAGTAGCAGAGACCGCGATTCGCCAGCTGACTGAGCCCAGCGGGCGG
GCAGCCAAAAAGACACCCACCAAGCGTAGCACACTCATCATCTCTGGGGTTTCCAAGGTGCCCA
TTGCTCAGGACGAGTTGGCACTGTCCCTGGGCTATGCGGCATCCCTGGAAGCCTCCATGCAGGA
AGATGCAGGGACCAGCGGAGGCCCCTCCTCACCTCCCTCAGACCCACCGGCCACGTCGCCGGGA
CCCCTAGATGCCCTCTCCAGTCCCACGAGTGTCCAGGAAGCAGATGAGACGACACGTTCGGACA
TTTCTGAGAGGCCCTCTGTGGATGACGTAGAGTCAGAAACGGGGTCTACTGGTGCCCTGGAAAC
CCGCAGCCTCAAGGATCACAAAGTGAGCTTCCTGCGCAGCGGCACGAAGCTCATCTTCCGAAGG
AGGCCTCGGCAGAAGGAAGCTGGTCTGAGCCAATCACACGATGACCTCTCCAACACGACGGCCA
CCCCCAGCGTCCGAAAGAAGGCTGGCAGCTTCTCTCGCCGTCTTATCAAGCGCTTTTCCTTCAA
ATCCAAACCCAAAGCCAATGGCAACCCCAGCCCGCAACTCTGAGGGCCCTGCTCACCTCCTGAG
CTAGGAGAGGGCAGGAGTCTTCTCAGTCCCTTCCCCACACCCCCCTCAATTCCCCTTCCTGGAT
TCCCAACAGCCTGGACCGGGGAAGTCCTCCGGATTCCAGGAAAGCCTGTCCACCCTGGGCCGTG
GGGCCGGTTGGAAGGGTATTTGCAGCGGGAAGCATGTGAGAGGTGGATGCCTGCCCGTTGCTGA
GGACACAGGAGAGGGCTCGGGGGGCTGGGAGCAAGAGGAGGCTCTGTCCTGGCATGCGTGGGTG
TCCCTCGGACCCACTGGCCTGCTGTTGGCACCGGCCCCTCAGAGGAGTCCCAGGGTGCTCAGCT
CCTCAGCTGATCCTTCGTCCCTTATTTATTCTCTTTTCTATTTATATGTGTGGTCCAGGACCCT
CAGTGAACAGATAAGCGAGGGCATCTCTCCCAGGTGACCCTTCTTTCCTGTCCCAGGAGGGTAG
GCAGTTCCCTTTGGGATGGGACTCCCACACCTCCCTCAGGTCCCCACTCCGACCAGCACCAGTG
TCTGCCTCTACGGACACTGGCAGCTCCTAGAAAGCCGGGCCGGTGCCCGGGATGGGGGGCAGGT
ACTCCCCACCGCCCTGCCTCCCCTTCTGCTCCTCATCCCTCCCTCCCCCTTTATTACCGTTTTT
GTACTTGATGCCTTCTCTGTGAGCAGTGGCTCTGTTTGAAGGAGGGAGCCAGGAGCCTGGTGGG
AAGCCCTCCCCAGAGAGATGGCTGTAGGGGCTTTATTTTGCAGACTGTGTGATGATAGAGCAAG
AGCAGGACTGCACCTCTGTATATTGGGAGATGATGATGTCCATTGCTGTGTGATGGCTTGGAAT
TTAATTTATTAAATTAAAGTCAAATTGGAGTTTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_013834918	(Get FASTA)	NCBI Sequence Viewer
	XP_013834919	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000016034
	ENSSSCP00000016034.2
	ENSSSCP00000033723
	ENSSSCP00000033723.1
	ENSSSCP00025009293.1
	ENSSSCP00030034913.1
	ENSSSCP00035009427.1
	ENSSSCP00040042432.1
	ENSSSCP00045044254.1
	ENSSSCP00055045354.1
	ENSSSCP00060012131.1
	ENSSSCP00065048546.1
	ENSSSCP00070001023.1

RefSeq Acc Id:	XP_013834918 ⟸ XM_013979464
- Peptide Label:	isoform X1
- UniProtKB:	F1SAH4 (UniProtKB/TrEMBL), A0A8D1SA59 (UniProtKB/TrEMBL), A0A4X1SGP3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDPGWGQQDMGWAALLILFAASLLTVFGWLLQYARGLWLARSRGGRGPGPALAAEPAGSLRELG VWRSLLRLRGTRAGAPEEPGVRGLLASLFAFKSFRENWQRAWVRALNEQACRDGSSIQIAFEEV PQLPPRASISRVTCVDQSERTMVLHCQLSAEEVMFPVSVTQQSPAAVSMETYHVTLTLPPTQLE VHLEEIPGEGLLVSWAFADRPDLRLTVLPKLQARERGEEQVELSTIEELIEDAIVSTQPAMVVN LRACSAPGGPIPSEKPATVPQAQPATPRPTRLFLRQLRASNLGSELEGSGEVCCVAELDVPMQQ KWTKPMRAGPEVEWSEDLTLNLGPQSQELTLKVLRSSSRGDTELLGQATLNVGAPSRPLTRRQV CPLTPGPGKALGQAATLAVELQYEEGSPRNLGTSTPSTPRPSITPTKKIELDRTIMPDGTIVTT VTTVQSRPRVDGKLDSPSRSPSKVEVTEKTTTVLSESGGPGSTSHSSSPGESHLSNGLDPVAET AIRQLTEPSGRAAKKTPTKRSTLIISGVSKVPIAQDELALSLGYAASLEASMQEDAGTSGGPSS PPSDPPATSPGPLDALSSPTSVQEADETTRSDISERPSVDDVESETGSTGALETRSLKDHKVSF LRSGTKLIFRRRPRQKEAGLSQSHDDLSNTTATPSVRKKAGSFSRRLIKRFSFKSKPKANGNPS PQL hide sequence

RefSeq Acc Id:	XP_013834919 ⟸ XM_013979465
- Peptide Label:	isoform X2
- UniProtKB:	A0A4X1SGP3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDPGWGQQDMGWAALLILFAASLLTVFGWLLQYARGLWLARSRGGRGPGPALAAEPAGSLRELG VWRSLLRLRGTRAGAPEEPGVRGLLASLFAFKSFRENWQRAWVRALNEQACRDGSSIQIAFEEV PQLPPRASISRVTCVDQSERTMVLHCQLSAEEVMFPVSVTQQSPAAVSMETYHVTLTLPPTQLE VHLEEIPGEGLLVSWAFADRPDLRLTVLPKLQARERGEEQVELSTIEELIEDAIVSTQPAMVVN LRACSAPGGPIPSEKPATVPQAQPATPRPTRLFLRQLRASNLGSELEGSGEVCCVAELDVPMQQ KWTKPMRAGPEVEWSEDLTLNLGPQSQELTLKVLRSSSRGDTELLGQATLNVGAPSRPLTRRQV CPLTPGPGKALGQAATLAVELQYEEGSPRNLGTSTPSTPRPSITPTKKIELDRTIMPDGTIVTT VTTVQSRPRVDGKLDSPSRSPSKVEVTEKTTTVLSESGGPGSTSHSSSRESHLSNGLDPVAETA IRQLTEPSGRAAKKTPTKRSTLIISGVSKVPIAQDELALSLGYAASLEASMQEDAGTSGGPSSP PSDPPATSPGPLDALSSPTSVQEADETTRSDISERPSVDDVESETGSTGALETRSLKDHKVSFL RSGTKLIFRRRPRQKEAGLSQSHDDLSNTTATPSVRKKAGSFSRRLIKRFSFKSKPKANGNPSP QL hide sequence

Ensembl Acc Id:

ENSSSCP00000033723 ⟸ ENSSSCT00000064254

Ensembl Acc Id:

ENSSSCP00000016034 ⟸ ENSSSCT00000016477

Protein Domains

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000015111	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00025016675	UniProtKB/TrEMBL
	ENSSSCG00030054897	UniProtKB/TrEMBL
	ENSSSCG00035019319	UniProtKB/TrEMBL
	ENSSSCG00040069734	UniProtKB/TrEMBL
	ENSSSCG00045036463	UniProtKB/TrEMBL
	ENSSSCG00055028575	UniProtKB/TrEMBL
	ENSSSCG00060020897	UniProtKB/TrEMBL
	ENSSSCG00065078336	UniProtKB/TrEMBL
	ENSSSCG00070000598	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000016477	ENTREZGENE
	ENSSSCT00000016477.4	UniProtKB/TrEMBL
	ENSSSCT00000064254	ENTREZGENE
	ENSSSCT00000064254.2	UniProtKB/TrEMBL
	ENSSSCT00025022463.1	UniProtKB/TrEMBL
	ENSSSCT00030076498.1	UniProtKB/TrEMBL
	ENSSSCT00035025015.1	UniProtKB/TrEMBL
	ENSSSCT00040095705.1	UniProtKB/TrEMBL
	ENSSSCT00045062798.1	UniProtKB/TrEMBL
	ENSSSCT00055056719.1	UniProtKB/TrEMBL
	ENSSSCT00060028329.1	UniProtKB/TrEMBL
	ENSSSCT00065108558.1	UniProtKB/TrEMBL
	ENSSSCT00070001159.1	UniProtKB/TrEMBL
InterPro	C2_dom	UniProtKB/TrEMBL
	C2_domain_sf	UniProtKB/TrEMBL
	C2CD2/C2CD2L	UniProtKB/TrEMBL
	SMP_C2CD2L	UniProtKB/TrEMBL
KEGG Report	ssc:100518141	UniProtKB/TrEMBL
NCBI Gene	C2CD2L	ENTREZGENE
PANTHER	PHOSPHOLIPID TRANSFER PROTEIN C2CD2L	UniProtKB/TrEMBL
	PTHR21119	UniProtKB/TrEMBL
Pfam	PF00168	UniProtKB/TrEMBL
	SMP_C2CD2L	UniProtKB/TrEMBL
PROSITE	PS50004	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49562	UniProtKB/TrEMBL
UniProt	A0A286ZQJ3_PIG	UniProtKB/TrEMBL
	A0A4X1SGP3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1SA59	ENTREZGENE, UniProtKB/TrEMBL
	F1SAH4	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:85991	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar