LOC100154127 (tripartite motif-containing protein 26) - Rat Genome Database

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Gene: LOC100154127 (tripartite motif-containing protein 26) Sus scrofa
Analyze
No known orthologs.
Symbol: LOC100154127
Name: tripartite motif-containing protein 26
RGD ID: 13954934
Description: ENCODES a protein that exhibits zinc ion binding (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SBAB-207G8.3
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1722,780,397 - 22,806,812 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2724,770,331 - 24,795,624 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in LOC100154127
1422 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
6 2 22 3 2 5 8 7 22 2 5 3

Sequence


RefSeq Acc Id: XM_013977562   ⟹   XP_013833016
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1722,780,397 - 22,806,812 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013977563   ⟹   XP_013833017
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1722,780,397 - 22,806,812 (+)NCBI
Sequence:
RefSeq Acc Id: XP_013833016   ⟸   XM_013977562
- UniProtKB: F1RZ54 (UniProtKB/TrEMBL),   A0A8D0J600 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013833017   ⟸   XM_013977563
- UniProtKB: F1RZ54 (UniProtKB/TrEMBL),   A0A8D0J600 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
B box-type   B30.2/SPRY   RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000001232 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00035059695 UniProtKB/TrEMBL
  ENSSSCG00060078732 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000001339 ENTREZGENE
  ENSSSCT00000001339.5 UniProtKB/TrEMBL
  ENSSSCT00035079993.1 UniProtKB/TrEMBL
  ENSSSCT00060108889.1 UniProtKB/TrEMBL
  ENSSSCT00060108891.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.920 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/TrEMBL
  Butyrophylin_SPRY UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  PRY UniProtKB/TrEMBL
  SPRY_dom UniProtKB/TrEMBL
  TRIM/RBCC UniProtKB/TrEMBL
  Znf_B-box UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
KEGG Report ssc:100154127 UniProtKB/TrEMBL
NCBI Gene LOC100154127 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIM UniProtKB/TrEMBL
Pfam PRY UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
  zf-B_box UniProtKB/TrEMBL
  zf-C3HC4_4 UniProtKB/TrEMBL
PRINTS BUTYPHLNCDUF UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/TrEMBL
  ZF_BBOX UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART BBOX UniProtKB/TrEMBL
  PRY UniProtKB/TrEMBL
  RING UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
Superfamily-SCOP B-box zinc-binding domain UniProtKB/TrEMBL
  RING/U-box UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
UniProt A0A8D0J600 ENTREZGENE, UniProtKB/TrEMBL
  F1RZ54 ENTREZGENE, UniProtKB/TrEMBL