ASB9 (ankyrin repeat and SOCS box containing 9) - Rat Genome Database

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Gene: ASB9 (ankyrin repeat and SOCS box containing 9) Sus scrofa
Analyze
Symbol: ASB9
Name: ankyrin repeat and SOCS box containing 9
RGD ID: 13942012
Description: ENCODES a protein that exhibits ubiquitin-like ligase-substrate adaptor activity (inferred); INVOLVED IN positive regulation of protein catabolic process (ortholog); protein ubiquitination (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Fanconi anemia (ortholog); multiple congenital anomalies-hypotonia-seizures syndrome 2 (ortholog); FOUND IN Cul5-RING ubiquitin ligase complex (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ankyrin repeat and SOCS box protein 9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX11,799,636 - 11,828,000 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X11,800,546 - 11,828,251 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X12,761,112 - 12,788,824 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ASB9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX11,799,636 - 11,828,000 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X11,800,546 - 11,828,251 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X12,761,112 - 12,788,824 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ASB9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X15,243,987 - 15,270,467 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX15,235,288 - 15,270,467 (-)EnsemblGRCh38hg38GRCh38
GRCh37X15,262,109 - 15,288,589 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X15,172,030 - 15,203,654 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X15,021,767 - 15,047,840NCBI
CeleraX19,377,104 - 19,404,177 (-)NCBICelera
Cytogenetic MapXp22.2NCBI
HuRefX13,019,996 - 13,047,217 (-)NCBIHuRef
CHM1_1X15,293,063 - 15,319,543 (-)NCBICHM1_1
T2T-CHM13v2.0X14,826,046 - 14,853,350 (-)NCBIT2T-CHM13v2.0
Asb9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X163,280,899 - 163,322,748 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX163,289,323 - 163,322,748 (+)EnsemblGRCm39 Ensembl
GRCm38X164,497,903 - 164,539,752 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX164,506,327 - 164,539,752 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X160,935,835 - 160,977,684 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X159,830,579 - 159,883,857 (+)NCBIMGSCv36mm8
CeleraX147,711,671 - 147,753,666 (+)NCBICelera
Cytogenetic MapXF5NCBI
cM MapX76.73NCBI
Asb9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X33,588,484 - 33,633,285 (-)NCBIGRCr8
mRatBN7.2X29,956,576 - 30,001,436 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX29,956,576 - 30,001,105 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX30,996,068 - 31,031,823 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X34,426,480 - 34,462,346 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X30,620,402 - 30,656,160 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X31,700,637 - 31,745,790 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX31,700,633 - 31,780,425 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X32,074,331 - 32,119,069 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X50,712,265 - 50,748,863 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX30,303,294 - 30,339,406 (-)NCBICelera
Cytogenetic MapXq14NCBI
Asb9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555192,902,802 - 2,941,433 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555192,902,802 - 2,941,358 (+)NCBIChiLan1.0ChiLan1.0
ASB9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X17,041,763 - 17,069,493 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X17,045,430 - 17,073,160 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X7,869,174 - 7,896,783 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X15,152,698 - 15,179,218 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX15,152,698 - 15,179,182 (-)Ensemblpanpan1.1panPan2
ASB9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X11,505,941 - 11,533,335 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX11,505,941 - 11,533,135 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX11,413,188 - 11,440,572 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X11,468,028 - 11,495,417 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX11,468,043 - 11,503,671 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X11,530,975 - 11,558,331 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X11,522,320 - 11,549,680 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X11,550,393 - 11,577,769 (-)NCBIUU_Cfam_GSD_1.0
Asb9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X4,660,432 - 4,692,363 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364704,660,443 - 4,692,173 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364704,660,417 - 4,692,175 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ASB9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X13,708,256 - 13,738,740 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX13,708,259 - 13,737,790 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605615,548,877 - 15,576,631 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Asb9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462482963,605 - 78,016 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462482963,524 - 86,042 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ASB9
436 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 1 5 14 12 23 3 6 2

Sequence


Ensembl Acc Id: ENSSSCT00000013271   ⟹   ENSSSCP00000012915
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX11,800,553 - 11,828,000 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000035090   ⟹   ENSSSCP00000029292
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX11,799,636 - 11,827,979 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000036502   ⟹   ENSSSCP00000029514
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX11,800,553 - 11,827,716 (-)Ensembl
RefSeq Acc Id: NM_001243703   ⟹   NP_001230632
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X11,800,547 - 11,827,877 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005673415   ⟹   XP_005673472
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X11,800,546 - 11,828,092 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005673416   ⟹   XP_005673473
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X11,800,546 - 11,828,092 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005673417   ⟹   XP_005673474
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X11,800,546 - 11,828,092 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005673418   ⟹   XP_005673475
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X11,800,546 - 11,828,092 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013985902   ⟹   XP_013841356
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X11,800,546 - 11,828,251 (-)NCBI
Sequence:
RefSeq Acc Id: XP_013841356   ⟸   XM_013985902
- Peptide Label: isoform X1
- UniProtKB: K7GN41 (UniProtKB/TrEMBL),   A0A480MYH3 (UniProtKB/TrEMBL),   A0A8D1PS95 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005673474   ⟸   XM_005673417
- Peptide Label: isoform X3
- UniProtKB: A0A8D0JIT3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005673475   ⟸   XM_005673418
- Peptide Label: isoform X4
- UniProtKB: F1SQU7 (UniProtKB/TrEMBL),   A0A4X1UV88 (UniProtKB/TrEMBL),   A0A8D0JIT3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005673472   ⟸   XM_005673415
- Peptide Label: isoform X1
- UniProtKB: K7GN41 (UniProtKB/TrEMBL),   A0A480MYH3 (UniProtKB/TrEMBL),   A0A8D1PS95 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005673473   ⟸   XM_005673416
- Peptide Label: isoform X2
- UniProtKB: A0A4X1UWB3 (UniProtKB/TrEMBL),   A0A480SUC3 (UniProtKB/TrEMBL),   A0A480MYH3 (UniProtKB/TrEMBL),   A0A8D1PS95 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001230632   ⟸   NM_001243703
- UniProtKB: F1SQU7 (UniProtKB/TrEMBL),   A0A4X1UV88 (UniProtKB/TrEMBL),   A0A8D0JIT3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000029292   ⟸   ENSSSCT00000035090
Ensembl Acc Id: ENSSSCP00000012915   ⟸   ENSSSCT00000013271
Ensembl Acc Id: ENSSSCP00000029514   ⟸   ENSSSCT00000036502
Protein Domains
SOCS box


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000012132 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015006883 UniProtKB/TrEMBL
  ENSSSCG00025071572 UniProtKB/TrEMBL
  ENSSSCG00030069765 UniProtKB/TrEMBL
  ENSSSCG00035022743 UniProtKB/TrEMBL
  ENSSSCG00040014382 UniProtKB/TrEMBL
  ENSSSCG00045026445 UniProtKB/TrEMBL
  ENSSSCG00050059745 UniProtKB/TrEMBL
  ENSSSCG00055005170 UniProtKB/TrEMBL
  ENSSSCG00060026900 UniProtKB/TrEMBL
  ENSSSCG00065052106 UniProtKB/TrEMBL
  ENSSSCG00070019690 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000013271 ENTREZGENE
  ENSSSCT00000013271.6 UniProtKB/TrEMBL
  ENSSSCT00000035090 ENTREZGENE
  ENSSSCT00000035090.3 UniProtKB/TrEMBL
  ENSSSCT00000036502.2 UniProtKB/TrEMBL
  ENSSSCT00015009170.1 UniProtKB/TrEMBL
  ENSSSCT00015009204.1 UniProtKB/TrEMBL
  ENSSSCT00015009236.1 UniProtKB/TrEMBL
  ENSSSCT00025098360.1 UniProtKB/TrEMBL
  ENSSSCT00025098474.1 UniProtKB/TrEMBL
  ENSSSCT00025098599.1 UniProtKB/TrEMBL
  ENSSSCT00030097631.1 UniProtKB/TrEMBL
  ENSSSCT00030097637.1 UniProtKB/TrEMBL
  ENSSSCT00030097651.1 UniProtKB/TrEMBL
  ENSSSCT00035029726.1 UniProtKB/TrEMBL
  ENSSSCT00035029728.1 UniProtKB/TrEMBL
  ENSSSCT00035029734.1 UniProtKB/TrEMBL
  ENSSSCT00040019243.1 UniProtKB/TrEMBL
  ENSSSCT00040019253.1 UniProtKB/TrEMBL
  ENSSSCT00040019288.1 UniProtKB/TrEMBL
  ENSSSCT00045045044.1 UniProtKB/TrEMBL
  ENSSSCT00045045120.1 UniProtKB/TrEMBL
  ENSSSCT00045045195.1 UniProtKB/TrEMBL
  ENSSSCT00050081399.1 UniProtKB/TrEMBL
  ENSSSCT00050081404.1 UniProtKB/TrEMBL
  ENSSSCT00050081408.1 UniProtKB/TrEMBL
  ENSSSCT00055010124.1 UniProtKB/TrEMBL
  ENSSSCT00055010147.1 UniProtKB/TrEMBL
  ENSSSCT00055010187.1 UniProtKB/TrEMBL
  ENSSSCT00060036435.1 UniProtKB/TrEMBL
  ENSSSCT00060036437.1 UniProtKB/TrEMBL
  ENSSSCT00060036444.1 UniProtKB/TrEMBL
  ENSSSCT00065071360.1 UniProtKB/TrEMBL
  ENSSSCT00065071363.1 UniProtKB/TrEMBL
  ENSSSCT00065071366.1 UniProtKB/TrEMBL
  ENSSSCT00070038963.1 UniProtKB/TrEMBL
  ENSSSCT00070038970.1 UniProtKB/TrEMBL
  ENSSSCT00070038988.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
  SOCS box UniProtKB/TrEMBL
InterPro Ankyrin-SOCS_box_domain UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  SOCS_box UniProtKB/TrEMBL
  SOCS_box-like_dom_sf UniProtKB/TrEMBL
KEGG Report ssc:100158057 UniProtKB/TrEMBL
NCBI Gene ASB9 ENTREZGENE
PANTHER ANKYRIN REPEAT AND SOCS BOX PROTEIN 9 UniProtKB/TrEMBL
  SOWAH (DROSOPHILA) HOMOLOG UniProtKB/TrEMBL
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/TrEMBL
  SOCS_box UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  SOCS UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
  SOCS_box UniProtKB/TrEMBL
Superfamily-SCOP SSF158235 UniProtKB/TrEMBL
  SSF48403 UniProtKB/TrEMBL
UniProt A0A480MYH3 ENTREZGENE, UniProtKB/TrEMBL
  A0A480SUC3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UV88 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UVA0_PIG UniProtKB/TrEMBL
  A0A4X1UWB3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0JIT3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0MHD2_PIG UniProtKB/TrEMBL
  A0A8D0MHE1_PIG UniProtKB/TrEMBL
  A0A8D1PS95 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1TKM5_PIG UniProtKB/TrEMBL
  F1SQU7 ENTREZGENE, UniProtKB/TrEMBL
  K7GN41 ENTREZGENE, UniProtKB/TrEMBL
  K7GNQ9_PIG UniProtKB/TrEMBL
VGNC ID VGNC:85568 ENTREZGENE