ASB16 (ankyrin repeat and SOCS box containing 16) - Rat Genome Database

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Gene: ASB16 (ankyrin repeat and SOCS box containing 16) Sus scrofa
Analyze
Symbol: ASB16
Name: ankyrin repeat and SOCS box containing 16
RGD ID: 13939413
Description: INVOLVED IN intracellular signal transduction (inferred); protein ubiquitination (inferred); ASSOCIATED WITH GRN-related frontotemporal lobar degeneration with TDP43 inclusions (ortholog); hereditary breast ovarian cancer syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ankyrin repeat and SOCS box protein 16
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1219,033,482 - 19,040,221 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11219,033,471 - 19,040,481 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21219,321,709 - 19,324,766 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
ASB16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1219,033,482 - 19,040,221 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11219,033,471 - 19,040,481 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21219,321,709 - 19,324,766 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ASB16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381744,170,704 - 44,179,084 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1744,170,447 - 44,179,084 (+)EnsemblGRCh38hg38GRCh38
GRCh371742,248,072 - 42,256,452 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361739,603,600 - 39,611,977 (+)NCBINCBI36Build 36hg18NCBI36
Build 341739,603,599 - 39,611,977NCBI
Celera1738,956,789 - 38,965,185 (+)NCBICelera
Cytogenetic Map17q21.31NCBI
HuRef1738,012,104 - 38,020,552 (+)NCBIHuRef
CHM1_11742,483,490 - 42,491,861 (+)NCBICHM1_1
T2T-CHM13v2.01745,023,804 - 45,032,183 (+)NCBIT2T-CHM13v2.0
Asb16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911102,159,577 - 102,170,280 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11102,159,569 - 102,170,288 (+)EnsemblGRCm39 Ensembl
GRCm3811102,268,751 - 102,279,454 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11102,268,743 - 102,279,462 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711102,130,137 - 102,139,375 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611102,084,913 - 102,094,151 (+)NCBIMGSCv36mm8
Celera11113,975,680 - 113,984,928 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1166.29NCBI
Asb16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81087,726,128 - 87,733,228 (+)NCBIGRCr8
mRatBN7.21087,225,976 - 87,233,078 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1087,225,912 - 87,233,078 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1092,255,568 - 92,262,797 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01091,727,554 - 91,734,668 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01087,120,873 - 87,127,987 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01090,217,979 - 90,224,984 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1090,217,924 - 90,226,537 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01090,004,557 - 90,011,501 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41091,351,087 - 91,359,176 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1085,941,754 - 85,948,522 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
Asb16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545117,265,904 - 17,273,289 (+)NCBIChiLan1.0ChiLan1.0
ASB16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21920,728,298 - 20,739,035 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11722,692,645 - 22,708,427 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01713,216,586 - 13,226,101 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11713,380,166 - 13,388,638 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1713,380,166 - 13,388,638 (-)Ensemblpanpan1.1panPan2
ASB16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1919,217,508 - 19,229,451 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl919,217,721 - 19,226,242 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha918,608,825 - 18,617,401 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0919,913,771 - 19,922,351 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl919,913,050 - 19,921,984 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1918,767,286 - 18,775,726 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0918,949,706 - 18,958,789 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0919,095,163 - 19,103,740 (-)NCBIUU_Cfam_GSD_1.0
Asb16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560218,548,419 - 18,556,201 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936541638,319 - 646,167 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936541638,266 - 646,463 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ASB16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11662,203,904 - 62,222,561 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1662,210,463 - 62,221,650 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607732,979,608 - 32,991,907 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in ASB16
139 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
2 2 7 3 7 6 7 2 3

Sequence


Ensembl Acc Id: ENSSSCT00000059515   ⟹   ENSSSCP00000051614
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1219,033,482 - 19,040,221 (-)Ensembl
RefSeq Acc Id: XM_021066898   ⟹   XP_020922557
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11219,033,471 - 19,040,481 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020922557   ⟸   XM_021066898
- UniProtKB: A0A4X1TR36 (UniProtKB/TrEMBL),   A0A480DL53 (UniProtKB/TrEMBL),   A0A8D1M139 (UniProtKB/TrEMBL),   A0A8D1RFM9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000051614   ⟸   ENSSSCT00000059515
Protein Domains
SOCS box


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000039673 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00030064074 UniProtKB/TrEMBL
  ENSSSCG00035077352 UniProtKB/TrEMBL
  ENSSSCG00040046849 UniProtKB/TrEMBL
  ENSSSCG00045018074 UniProtKB/TrEMBL
  ENSSSCG00050029167 UniProtKB/TrEMBL
  ENSSSCG00055023351 UniProtKB/TrEMBL
  ENSSSCG00070011003 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000059515 ENTREZGENE
  ENSSSCT00000059515.3 UniProtKB/TrEMBL
  ENSSSCT00030089596.1 UniProtKB/TrEMBL
  ENSSSCT00035105310.1 UniProtKB/TrEMBL
  ENSSSCT00040063066.1 UniProtKB/TrEMBL
  ENSSSCT00045030784.1 UniProtKB/TrEMBL
  ENSSSCT00050039214.1 UniProtKB/TrEMBL
  ENSSSCT00055045956.1 UniProtKB/TrEMBL
  ENSSSCT00070021364.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
  SOCS box UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  SOCS_box UniProtKB/TrEMBL
  SOCS_box-like_dom_sf UniProtKB/TrEMBL
NCBI Gene ASB16 ENTREZGENE
PANTHER ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED UniProtKB/TrEMBL
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/TrEMBL
  Ank_5 UniProtKB/TrEMBL
  SOCS_box UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  SOCS UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
  SOCS_box UniProtKB/TrEMBL
Superfamily-SCOP SSF158235 UniProtKB/TrEMBL
  SSF48403 UniProtKB/TrEMBL
UniProt A0A287B699_PIG UniProtKB/TrEMBL
  A0A480DL53 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TR36 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1HMG8_PIG UniProtKB/TrEMBL
  A0A8D1M139 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1RFM9 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:98974 ENTREZGENE