SLC22A23 (solute carrier family 22 member 23) - Rat Genome Database

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Gene: SLC22A23 (solute carrier family 22 member 23) Sus scrofa
Analyze
Symbol: SLC22A23
Name: solute carrier family 22 member 23
RGD ID: 13937692
Description: ENCODES a protein that exhibits transmembrane transporter activity (inferred); INVOLVED IN transmembrane transport (inferred); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN endomembrane system (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl71,988,696 - 2,131,908 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.171,988,690 - 2,131,778 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.272,049,521 - 2,194,262 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
SLC22A23
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl71,988,696 - 2,131,908 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.171,988,690 - 2,131,778 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.272,049,521 - 2,194,262 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC22A23
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3863,268,973 - 3,457,050 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl63,268,962 - 3,457,050 (-)EnsemblGRCh38hg38GRCh38
GRCh3763,269,207 - 3,457,284 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3663,214,691 - 3,390,217 (-)NCBINCBI36Build 36hg18NCBI36
Build 3463,214,690 - 3,390,217NCBI
Celera64,498,122 - 4,685,667 (-)NCBICelera
Cytogenetic Map6p25.2NCBI
HuRef63,147,050 - 3,335,140 (-)NCBIHuRef
CHM1_163,271,684 - 3,459,219 (-)NCBICHM1_1
T2T-CHM13v2.063,137,376 - 3,325,795 (-)NCBIT2T-CHM13v2.0
Slc22a23
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391334,363,141 - 34,530,666 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1334,363,141 - 34,529,165 (-)EnsemblGRCm39 Ensembl
GRCm381334,179,158 - 34,345,275 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1334,179,158 - 34,345,182 (-)EnsemblGRCm38mm10GRCm38
MGSCv371334,271,027 - 34,437,051 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361334,186,623 - 34,352,647 (-)NCBIMGSCv36mm8
Celera1335,306,053 - 35,472,573 (-)NCBICelera
Cytogenetic Map13A3.3NCBI
cM Map1314.05NCBI
Slc22a23
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81730,749,445 - 30,915,139 (+)NCBIGRCr8
mRatBN7.21730,544,106 - 30,709,790 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1730,544,106 - 30,709,790 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1730,358,550 - 30,523,491 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01731,962,296 - 32,127,243 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01730,354,290 - 30,519,235 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01731,236,015 - 31,403,685 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1731,236,015 - 31,403,685 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01733,132,227 - 33,298,110 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41736,883,334 - 37,049,975 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11737,007,393 - 37,049,894 (+)NCBI
Celera1730,108,140 - 30,274,171 (+)NCBICelera
Cytogenetic Map17p12NCBI
Slc22a23
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554659,840,017 - 10,006,384 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554659,840,017 - 10,006,114 (+)NCBIChiLan1.0ChiLan1.0
SLC22A23
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2517,901,199 - 18,087,463 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1613,904,755 - 14,091,556 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v063,107,790 - 3,294,510 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.163,296,927 - 3,481,346 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl63,296,927 - 3,481,350 (-)Ensemblpanpan1.1panPan2
SLC22A23
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1353,545,426 - 3,671,702 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl353,545,097 - 3,692,422 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha353,555,937 - 3,719,101 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0353,605,071 - 3,768,469 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl353,605,275 - 3,768,469 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1353,481,096 - 3,644,184 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0353,503,459 - 3,667,018 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0354,836,312 - 4,999,695 (-)NCBIUU_Cfam_GSD_1.0
Slc22a23
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494620,735,455 - 20,914,210 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365349,005,664 - 9,183,577 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365349,004,441 - 9,183,201 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC22A23
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11768,727,525 - 68,912,488 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660443,205,829 - 3,396,449 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc22a23
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475621,533,394 - 21,686,357 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475621,532,541 - 21,689,471 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC22A23
7490 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 1 5 14 12 23 3 6 2

Sequence


Ensembl Acc Id: ENSSSCT00000001096   ⟹   ENSSSCP00000001074
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl71,988,696 - 2,131,908 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000048156   ⟹   ENSSSCP00000049413
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl71,989,497 - 2,131,709 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000060595   ⟹   ENSSSCP00000056537
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl71,988,696 - 2,131,908 (-)Ensembl
RefSeq Acc Id: XM_013977405   ⟹   XP_013832859
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.171,988,690 - 2,131,778 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021100121   ⟹   XP_020955780
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.171,988,690 - 2,131,776 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021100122   ⟹   XP_020955781
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.172,000,523 - 2,131,777 (-)NCBI
Sequence:
RefSeq Acc Id: XP_013832859   ⟸   XM_013977405
- Peptide Label: isoform X1
- UniProtKB: A0A8D0VPI4 (UniProtKB/TrEMBL),   A0A287BKD0 (UniProtKB/TrEMBL),   A0A287AZT7 (UniProtKB/TrEMBL),   A0A4X1SNB3 (UniProtKB/TrEMBL),   A0A8D1DXP1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020955780   ⟸   XM_021100121
- Peptide Label: isoform X2
- UniProtKB: A0A8D0VML5 (UniProtKB/TrEMBL),   F1RWZ0 (UniProtKB/TrEMBL),   A0A4X1SNA8 (UniProtKB/TrEMBL),   A0A8D1DZ68 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020955781   ⟸   XM_021100122
- Peptide Label: isoform X3
- UniProtKB: A0A8D1DXP1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000001074   ⟸   ENSSSCT00000001096
Ensembl Acc Id: ENSSSCP00000056537   ⟸   ENSSSCT00000060595
Ensembl Acc Id: ENSSSCP00000049413   ⟸   ENSSSCT00000048156
Protein Domains
Major facilitator superfamily (MFS) profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000001004 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00030013932 UniProtKB/TrEMBL
  ENSSSCG00035046175 UniProtKB/TrEMBL
  ENSSSCG00040024709 UniProtKB/TrEMBL
  ENSSSCG00045021691 UniProtKB/TrEMBL
  ENSSSCG00055020322 UniProtKB/TrEMBL
  ENSSSCG00060013966 UniProtKB/TrEMBL
  ENSSSCG00065035944 UniProtKB/TrEMBL
  ENSSSCG00070002659 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000001096 ENTREZGENE
  ENSSSCT00000001096.5 UniProtKB/TrEMBL
  ENSSSCT00000060595 ENTREZGENE
  ENSSSCT00000060595.3 UniProtKB/TrEMBL
  ENSSSCT00030019191.1 UniProtKB/TrEMBL
  ENSSSCT00030019201.1 UniProtKB/TrEMBL
  ENSSSCT00035061420.1 UniProtKB/TrEMBL
  ENSSSCT00035061425.1 UniProtKB/TrEMBL
  ENSSSCT00040033504.1 UniProtKB/TrEMBL
  ENSSSCT00040033674.1 UniProtKB/TrEMBL
  ENSSSCT00045037218.1 UniProtKB/TrEMBL
  ENSSSCT00045037500.1 UniProtKB/TrEMBL
  ENSSSCT00055040294.1 UniProtKB/TrEMBL
  ENSSSCT00055040418.1 UniProtKB/TrEMBL
  ENSSSCT00060018472.1 UniProtKB/TrEMBL
  ENSSSCT00060018481.1 UniProtKB/TrEMBL
  ENSSSCT00065049004.1 UniProtKB/TrEMBL
  ENSSSCT00065049010.1 UniProtKB/TrEMBL
  ENSSSCT00070004964.1 UniProtKB/TrEMBL
  ENSSSCT00070004975.1 UniProtKB/TrEMBL
  ENSSSCT00070004983.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MFS_dom UniProtKB/TrEMBL
  MFS_sugar_transport-like UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
NCBI Gene SLC22A23 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 22 MEMBER UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 22 MEMBER 23 UniProtKB/TrEMBL
Pfam Sugar_tr UniProtKB/TrEMBL
PROSITE MFS UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt A0A287AZT7 ENTREZGENE, UniProtKB/TrEMBL
  A0A287BKD0 ENTREZGENE
  A0A4X1SN77_PIG UniProtKB/TrEMBL
  A0A4X1SNA8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SNB3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0VML5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0VPI4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1DXP1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1DZ68 ENTREZGENE, UniProtKB/TrEMBL
  F1RWZ0 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A287BKD0 UniProtKB/TrEMBL