H2BC10 (H2B clustered histone 10) - Rat Genome Database

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Gene: H2BC10 (H2B clustered histone 10) Sus scrofa
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Symbol: H2BC10
Name: H2B clustered histone 10
RGD ID: 13922478
Description: ENCODES a protein that exhibits DNA binding (inferred); protein heterodimerization activity (inferred); structural constituent of chromatin (inferred); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); innate immune response in mucosa (ortholog); substantia nigra development (ortholog); FOUND IN cytosol (ortholog); extracellular space (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: histone H2B type 1; LOC110261663
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl720,907,099 - 20,908,327 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1720,907,083 - 20,908,336 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
H2BC10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl720,907,099 - 20,908,327 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1720,907,083 - 20,908,336 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
H2BC12L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38215,972,947 - 5,973,385 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2143,565,182 - 43,565,648 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic Map21p12NCBI
CHM1_12144,543,247 - 44,543,686 (+)NCBICHM1_1

Variants

.
Variants in H2BC10
21 total Variants

Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSSCT00000105027   ⟹   ENSSSCP00000078803
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl720,907,099 - 20,908,327 (+)Ensembl
RefSeq Acc Id: XM_021099836   ⟹   XP_020955495
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1720,907,083 - 20,908,336 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020955495 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000078803
  ENSSSCP00030030690.1
  ENSSSCP00060005701.1
RefSeq Acc Id: XP_020955495   ⟸   XM_021099836
- UniProtKB: A0A4X1VJL1 (UniProtKB/TrEMBL),   I3LAJ9 (UniProtKB/TrEMBL),   A0A480K1G1 (UniProtKB/TrEMBL),   A0A8D0X504 (UniProtKB/TrEMBL),   A0A8D1SZF9 (UniProtKB/TrEMBL),   A0A8D1RZK9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000078803   ⟸   ENSSSCT00000105027
Protein Domains
Histone H2A/H2B/H3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000056711 Ensembl, ENTREZGENE
  ENSSSCG00030047979 UniProtKB/TrEMBL
  ENSSSCG00060011260 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000105027 ENTREZGENE
  ENSSSCT00030066996.1 UniProtKB/TrEMBL
  ENSSSCT00060014684.1 UniProtKB/TrEMBL
Gene3D-CATH Histone, subunit A UniProtKB/TrEMBL
InterPro Histone-fold UniProtKB/TrEMBL
  Histone_H2A/H2B/H3 UniProtKB/TrEMBL
  Histone_H2B UniProtKB/TrEMBL
  HISTONE_H2B_site UniProtKB/TrEMBL
NCBI Gene LOC110261663 ENTREZGENE
PANTHER HISTONE H2B UniProtKB/TrEMBL
Pfam Histone UniProtKB/TrEMBL
PRINTS HISTONEH2B UniProtKB/TrEMBL
PROSITE HISTONE_H2B UniProtKB/TrEMBL
SMART H2B UniProtKB/TrEMBL
Superfamily-SCOP Histone-fold UniProtKB/TrEMBL
UniProt A0A480K1G1 ENTREZGENE
  A0A4X1VJL1 ENTREZGENE
  A0A8D0X504 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1RZK9 ENTREZGENE
  A0A8D1SZF9 ENTREZGENE, UniProtKB/TrEMBL
  I3LAJ9 ENTREZGENE
VGNC ID VGNC:109816 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-13 H2BC10  H2B clustered histone 10  LOC110261663  histone H2B type 1  Symbol and/or name change 19259463 PROVISIONAL