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Gene: TYW1 (tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)) Sus scrofa

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Symbol:

TYW1

Name:

tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)

RGD ID:

13910861

Description:

ENCODES a protein that exhibits 4 iron, 4 sulfur cluster binding (inferred); calcium ion binding (inferred); catalytic activity (inferred); INVOLVED IN tRNA processing (inferred); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN cytoplasm (inferred); Golgi apparatus (inferred); membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase; tRNA wybutosine-synthesizing protein 1 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	3	15,969,573 - 16,160,652 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	16,268,153 - 16,407,307 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

pleomorphic xanthoastrocytoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

tRNA processing (IEA)

Cellular Component

cytoplasm (IEA)

Golgi apparatus (IEA)

membrane (IEA)

perinuclear region of cytoplasm (IEA)

plasma membrane (IEA)

Molecular Function

4 iron, 4 sulfur cluster binding (IEA)

calcium ion binding (IEA)

catalytic activity (IEA)

FMN binding (IEA)

lyase activity (IEA)

metal ion binding (IEA)

tRNA-4-demethylwyosine synthase activity (IEA)

References

Additional References at PubMed

PMID:14681463	PMID:17145712	PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

TYW1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	3	15,969,573 - 16,160,652 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	16,268,153 - 16,407,307 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TYW1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	66,996,833 - 67,239,514 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	66,995,173 - 67,239,514 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	66,461,820 - 66,704,501 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	66,099,252 - 66,341,934 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	65,905,966 - 66,148,646	NCBI
Celera	7	65,404,719 - 65,654,392 (-)	NCBI		Celera
Cytogenetic Map	7	q11.21	NCBI
HuRef	7	62,645,117 - 62,888,045 (+)	NCBI		HuRef
CHM1_1	7	66,557,015 - 66,797,606 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	68,216,506 - 68,459,212 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	65,799,354 - 66,042,069 (+)	NCBI

Tyw1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	130,284,460 - 130,370,408 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	130,284,460 - 130,370,404 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	130,255,572 - 130,341,568 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	130,255,619 - 130,341,563 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	130,731,489 - 130,817,437 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	130,540,322 - 130,625,860 (+)	NCBI		MGSCv36	mm8
Celera	5	127,268,547 - 127,354,754 (+)	NCBI		Celera
Cytogenetic Map	5	G1.3	NCBI
cM Map	5	69.0	NCBI

Tyw1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	31,968,198 - 32,054,454 (-)	NCBI		GRCr8
mRatBN7.2	12	26,332,020 - 26,418,286 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	26,330,351 - 26,418,208 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	27,480,231 - 27,566,470 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	28,090,756 - 28,176,978 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	27,149,061 - 27,235,174 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	29,824,990 - 29,919,240 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	29,824,981 - 29,919,320 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	31,761,916 - 31,856,112 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	12	31,135,209 - 31,178,761 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	27,368,907 - 27,455,110 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	27,232,122 - 27,318,272 (-)	NCBI
Celera	12	28,046,508 - 28,132,529 (-)	NCBI		Celera
Cytogenetic Map	12	q12	NCBI

LOC479708
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	1,263,661 - 1,502,800 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	2,963,338 - 3,202,262 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	1,068,769 - 1,314,298 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	6	1,003,760 - 1,243,099 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	1,005,554 - 1,251,074 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	1,177,346 - 1,423,042 (+)	NCBI		UU_Cfam_GSD_1.0

Variants

Variants in TYW1
8469 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003481010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021086356	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021086357	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK237819	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK352131	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK395856	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01120234	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_003481010 ⟹ XP_003481058

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	3	16,017,973 - 16,160,652 (-)	NCBI

Sequence:

show sequence

CCCGCCCCTTCCCCCTCTGAGCCAATCCAGACAGGCCTGCGAATGGCATGGCTGCCCCCAGTTT
CTCAGGCTCTGGGCACACGGCTAATGCTACAAGGAGGTTCTGGCGGTTTCCCAGTATTCGCGCC
GGACGCTAGGTTTGTTAGGTCCGCTGTCCTGGGCTCCAGTCGCGCCGCAGGACTTGGGCTCTAA
GAAGAATGGATCCTTTGGATACGTGGGACTTCTCCTCGCCTTTGATATCATTATGGATAAACAG
GTTTTACATATATTTGGGCTTAGCCTTTGGCTTTAGCCTTTGGATATGTTTCCAGATTGTTATC
AGGAAGCAGGACAAGAACTCACAGGAAAAGACTGTTCAAAATGCATCACGGAATTTGATGACCA
ATGGCTCTCTCTCTCTTGAAAGGAAGGAAGTCTTTGTGTCTGGAGTGAAGATTTTCTATGGTTC
CCAGACTGGCACAGCAAAGGGGTTTGCAGCAATTCTGGCAGAAGCAGTGACCTCCCTTGACCTG
CCTGTGGCAGTGGTGGATCTGAAGGCATATGATCCGGACGATTATCTGCTAGAAGAGGTCACTA
GTAAGAGTGTCTGTGCCTTCCTGGTTGCCACCTACACGGATGGTCGCCCGACGGAGAGCGCAGA
GTGGTTCTGCAAGTGGCTGGAGGAGGCAGCCAGTGACTTTCGATTTGGCAAAACCTACCTGAAG
GGTATGCGATATGCCGTGTTTGGCCTGGGAAACTCCGCCTATGCCAGCCACTTCAACAAGGTGG
GGAAGAACGTGGACAAGTGGCTGTGGATGCTGGGAGCTCATCGCGTGATGGCCCGTGGGGAGGG
TGACTGCGATGTGGTTAAAAGCAAACATGGCAGCATCGAGGCCGACTTCACAGCTTGGAAGGCC
AAGTTCATCTCCCGACTACAGGCACTCCGTCAGGGAGAGAGGAAGCCCTGCAGTGGTAACTGCA
GGAAAGGCAAGTGCGAGTCTCATCAGCGCGGCACAGGGCAAGCGGAGCCAGGGCCCCAGGCTCA
GGAGGGATTTCGTCGGAGAGATGCCGAGGAGGAGGAGCTCCTTGGGAGCACCAGTGAGGAGGAG
TCTGGCTCAGAGGACCAGCAGAGTGGCAGTTCTGTCATTGACGTCGAAGACCTCGGCCAAGTGA
TGGATCGTGTGAAGAAAGAAAAGAGAGAAAAGGCGCAGCAGGAAGGGGAAACTGGCGTGTTGAG
GAGTGCAGTGAAGAACGAAGCCAATGAACCAAGAGCTATGATAACTCCCGCTCTCCGAGAAGCC
CTTACTAAACAAGGTTATCAGCTGATTGGGAGCCACTCTGGGGTGAAGCTTTGCAGGTGGACAA
AGTCCATGCTCCGAGGGAGAGGAGGTTGCTATAAACATACATTCTATGGCATTGAAAGCCATCG
CTGCATGGAAACTACCCCAAGCTTGGCATGTGCGAATAAATGTGTCTTCTGTTGGCGGCACCAC
ACCAATCCAGTGGGTACTGAATGGCGGTGGAAGATGGACCAGCCTGATATCATCTTAAAGGAAG
CCATCGAAAACCATCAGAACATGATCAAGCAGTTTAAAGGAGTACCAGGTGTCAAGGAAGAACG
CTTTGAGGAAGGAATGACAGTCAAACACTGCGCCTTGTCCCTTGTGGGAGAACCCATCATGTAC
CCAGAAATCAACAGGTTTGTGAAGCTGCTGCACGAGTGTAAAATCTCCAGCTTCCTGGTCACAA
ACGCACAGTTCCCTGCGGAAATCAGGAACCTCAAACCAGTTACCCAACTATATGTCAGTGTGGA
CGCTAGCACCAAAGAGAGCCTGAAGAAAATTGACCGCCCGCTCTTCAAGGATTTCTGGCAAAGA
TTCCTTGACAGTTTAAAAGCCTTGGCTGAAAAGCAACAACGTACTGTATACAGACTGACACTGG
TGAAAGCGTGGAACGTGGATGAGCTCCAGGCCTATGCCCAGCTGGTGTCCCTGGGGAGCCCCGA
CTTCATCGAGGTGAAGGGCGTTACCTACTGTGGAGAGAGTTCAGCGAGCAGTCTTACCATGGCC
AACGTGCCCTGGCACGAGGAAGTGGTGCGTTTTGTCTCGGAGTTGGTGGGTCTGATCCCCGACT
ACGAAATTGCTTGCGAACACGAACATTCCAACTGCCTCCTGATAGCTCACAAGAAGTTTAAGAT
TGGCAGAGAATGGTGGACGTGGATCGATTATAACCGCTTCCAGGAGCTCATCCAGGAATACGAA
GACAGTGGTGGATCAAAAACGTTCAGCGCAAAGGATTACATGGCCAGAACGCCTCACTGGGCAC
TATTTGGTGCCAGTGAAAGAGGCTTTGATCCCAAGGACACAAGATATCAGAGAAAGAACAAAGC
AAAGGATATTTCCGGATGTTGAGATTATCTGAATGTAGGATCCTGAAGGACACAAACCGATGGC
CTCAGAAGGTTCTCGGATTCCACTGTGATTTTCCTAAGGACAATGACCCAAATGATATCTCACA
CGGAGAAGAATAAGGAAGAACACGGGGACACCACTCACACCGCAGGCTCAGGAGACGGCACCCA
ACACTTTGAGTGGCGGGGGCTCAGCCTCACCATTTCTTTACAGAACTCAGTCCTTTTTCTGAGT
TTACTTTTGAAAGAAAATGATTTTGAGGAGGGTGTACACAGTCATTATTAGAATTTAACTGAGT
TTGGGACTAGAATTTGGAAGACGCCCTCGGATGCCATTCCTGGGCATGTCATGCAGAATGAACA
CCTGTTCCTCTTCCTCCGTCGTGGGCTGCTGGCCTTTGCTGATCGTGTTACCCTGAGGCGGCAT
ATCTGCTCCCTCCCTTTCCTACACCTTCAGATAACATCTCCTGAAAGTAATTTAAGTGGTCATA
ATTATCAATTATTTTAAGTACTGCATGGATTTCTTTAAATTTTTGCTTCATACCAACCCTTCGG
AGATTGAGTTGGATCTAAAACTGTCCCAAGTCTCATTTCTTTCCCATCCAGATTGCTTGTAGAA
GGTAATATGTGGGCTGGATTCGAGTAGAACCTCCAGCCGAAGGAATTGTCCCATGATGTCACTG
AATAATTAGTCTCTAAACTTTGAAATAATGAGCACAATTTGCTTTCAGTTTAAAAAGTCAGTGT
TGAAGGCCCTCGGCACTGCACATCTGGCGGGTTTCCCTCTTCTTTCATTCTTGGAGCCTTCGCT
CCTTTTTAGCAATCTGTTCTGTAAGGTTCCAGTTTTCTTTCTAATTGAAAATGTCATTAAATAC
TTCATAGTTTTTGAAAGGTGTTACAGGTGTTTTAAAAATTCCTTTATCCTAAAAATTTAATTAA
TAAAATGTCTTTTGTGAAGACTTGGACCACACATTGTCTTCTGAGCACTTTCTGGTCCTGTGGT
TCTCAGCCCTTTCAGACCCACCTCCTCCTCATAGATCAGCTGTTTTGTAACATGCTCTATTCTC
TGCTGAAGTAAAATTCAATGAGGTAGAATCTGCCTAACTCAGTTGAAAACTGGGCACTGTATTT
ATTGCTAAAGGATAGAGTCGAAACACATCTCTCTTGTGCCACAGGATGAGACAGGGACAAAGGA
TCACAGGATTCAGATGTTCTTGTTGAACCCAGCACACCTGCAAGCGTGTTCATTCTCCCATTCT
GCTGACCACTGAGACAAACTAGAGGCAGCAGTGGTCTAGGCCAGTGAGGCAGGGCCTCGCTGGA
TAGAGATGGATAAACACCTCCAAGTAGGATGAAGTGTTACAAAGCAAGAACTCATGCTAAGCAG
CACACAGATGGGCTCCTGTTTGTGACAGTTAACTGAGCAGACAGCTGTTAGTAAACGCTTTGGG
GGCTGCCCTGAGGAGCAGGGCAGGAAGCAGAGCATGCTGGGCTTTGGATCATCCCTCAGCCTCT
TTTTCAACCAGGCAACTCTGCTTTTATTTTTTATGTATTGAGGTTCTGCTTAAGATGTGATTTG
AACGAAGATAATTCTGTTGCTTCAAAGAAAAAAAAAACAGCAAACCTCTCACCTCCAGAATGAG
CCTTTCTGGCTCCATTACCTTCAGGTACATAAATGAGTAATTCTTCTTGCCTTCCACCCTGGAA
ATGTTTGCTTTATATTCAAGCAAACATTCAAAAAGAAACCCAAGACAAAAACATGGCGTATCCA
TCCCAGTCACAACAAAAAAATTTTTTAATGCCCAGGGGGAAAGAATGTAATGGGATCTCTGTGA
AAAAAATTTCAGTGTTTCCTGAGCAGTATTAACGCACAAGAGATTGGGAAGCTTGAATATTCTA
AGAAGGTGAGCTGTTTGAAAAATAGCATTCTAGATGTCCAGTGGAAGTTATTGTTGGAGGCTGG
GCAAATGATTGCAACATTCTGCTGAAAACTTAGCCAGGTAAGAATAGTTACAAAGTTCTAGAAA
GGAAAATTGCCTTATAAGATATAAAACACATTATCTAAAATAATTAAAACCACTTAAAACAAGA
GATCAACATCCAAAATGACAAGAGTAAGAATCTCTGCTTAGGAGTTCCCGTCATGGCACAGTGG
TTAACGAATCCAACTAGGAACCATGAGGTTGCGGGTTTGATCCTGGCCTTGCTCATTGGGTTAA
GGATCCGGCATTGCCGTGAGCTGTGGTGTAGGTTGCAGATGCAGCTCGGATCCCACGTTGCTGT
GGCTCTGGCGTAGGCCAGTGGCTATAGCTCCAATTCAACCCCTGGCCTGGGAATCTCCATATGC
CGCAGGAACGGCCCAAGAAATGGCAAAAAGACAAAAAAAAAAAAAAAAAAAAAAGAATCTCTGC
TTACTCTCCTTCTAAAATAGTGAAAATATTGGCAAAACAACTAAAATCAATTAATTTTAGAACT
CTAACAATTTAACCAAAGGTTTGTATTGAGCTGAAAATCATCTATTAAGAGAAACTACTGAACC
TTAATAAAATGAACAGCTTACATCCATCAGAAAGCATGGGGGCTGGAAGATGGGTTGATATCTT
AAAAGAACTAGAAGAAAAGACTTTGAACCAAAAATTCTATATCTAGCTAAATCGTCCTTTACAA
GTAGAGAAAAAATTGAGGAATTTTCCAGATAAAAAGTAAGAGAATTTATCACCAGCAGACCTGC
CTACAAGGAGGAGTCCGCAGGCCCTGATGAAAATGTGTTAGACACTAACTTGAAACCAGACGAA
GAAATAAAGAGCACCGGTAAACATCACTATGTGAATTTTATAAAAGACAATATAGATGTATTTT
TGTTTGTGACCCTCCTATCTGCTTTAAAAGATAGCTGCCTAAAGTCAATAATTATAAACTGTTG
ATGGACTTAGATGCAATTTGTATAATAACAGTAACAGCACAAAATTAAGTGGGTCTGATTCCAA
AGCAGATTGTTTTAAGATGCTAATTTTAATCTCAAGAGCAGCCTCTAAGAATAAATTTAGAAAT
TATAGGTAAATATATATGTGTAAAATATATATTTTTATATAATACATATTTTACATATTTTATA
TGTAAAATAAATATATAATATATAACTT

hide sequence

RefSeq Acc Id:

XM_021086356 ⟹ XP_020942015

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	3	16,003,433 - 16,160,652 (-)	NCBI

Sequence:

show sequence

CCCGCCCCTTCCCCCTCTGAGCCAATCCAGACAGGCCTGCGAATGGCATGGCTGCCCCCAGTTT
CTCAGGCTCTGGGCACACGGCTAATGCTACAAGGAGGTTCTGGCGGTTTCCCAGTATTCGCGCC
GGACGCTAGGTTTGTTAGGTCCGCTGTCCTGGGCTCCAGTCGCGCCGCAGGACTTGGGCTCTAA
GAAGAATGGATCCTTTGGATACGTGGGACTTCTCCTCGCCTTTGATATCATTATGGATAAACAG
GTTTTACATATATTTGGGCTTAGCCTTTGGCTTTAGCCTTTGGATATGTTTCCAGATTGTTATC
AGGAAGCAGGACAAGAACTCACAGGAAAAGACTGTTCAAAATGCATCACGGAATTTGATGACCA
ATGGCTCTCTCTCTCTTGAAAGGAAGGAAGTCTTTGTGTCTGGAGTGAAGATTTTCTATGGTTC
CCAGACTGGCACAGCAAAGGGGTTTGCAGCAATTCTGGCAGAAGCAGTGACCTCCCTTGACCTG
CCTGTGGCAGTGGTGGATCTGAAGGCATATGATCCGGACGATTATCTGCTAGAAGAGGTCACTA
GTAAGAGTGTCTGTGCCTTCCTGGTTGCCACCTACACGGATGGTCGCCCGACGGAGAGCGCAGA
GTGGTTCTGCAAGTGGCTGGAGGAGGCAGCCAGTGACTTTCGATTTGGCAAAACCTACCTGAAG
GGTATGCGATATGCCGTGTTTGGCCTGGGAAACTCCGCCTATGCCAGCCACTTCAACAAGGTGG
GGAAGAACGTGGACAAGTGGCTGTGGATGCTGGGAGCTCATCGCGTGATGGCCCGTGGGGAGGG
TGACTGCGATGTGGTTAAAAGCAAACATGGCAGCATCGAGGCCGACTTCACAGCTTGGAAGGCC
AAGTTCATCTCCCGACTACAGGCACTCCGTCAGGGAGAGAGGAAGCCCTGCAGTGGTAACTGCA
GGAAAGGCAAGTGCGAGTCTCATCAGCGCGGCACAGGGCAAGCGGAGCCAGGGCCCCAGGCTCA
GGAGGGATTTCGTCGGAGAGATGCCGAGGAGGAGGAGCTCCTTGGGAGCACCAGTGAGGAGGAG
TCTGGCTCAGAGGACCAGCAGAGTGGCAGTTCTGTCATTGACGTCGAAGACCTCGGCCAAGTGA
TGGATCGTGTGAAGAAAGAAAAGAGAGAAAAGGCGCAGCAGGAAGGGGAAACTGGCGTGTTGAG
GAGTGCAGTGAAGAACGAAGCCAATGAACCAAGAGCTATGATAACTCCCGCTCTCCGAGAAGCC
CTTACTAAACAAGGTTATCAGCTGATTGGGAGCCACTCTGGGGTGAAGCTTTGCAGGTGGACAA
AGTCCATGCTCCGAGGGAGAGGAGGTTGCTATAAACATACATTCTATGGCATTGAAAGCCATCG
CTGCATGGAAACTACCCCAAGCTTGGCATGTGCGAATAAATGTGTCTTCTGTTGGCGGCACCAC
ACCAATCCAGTGGGTACTGAATGGCGGTGGAAGATGGACCAGCCTGATATCATCTTAAAGGAAG
CCATCGAAAACCATCAGAACATGATCAAGCAGTTTAAAGGAGTACCAGGTGTCAAGGAAGAACG
CTTTGAGGAAGGAATGACAGTCAAACACTGCGCCTTGTCCCTTGTGGGAGAACCCATCATGTAC
CCAGAAATCAACAGGTTTGTGAAGCTGCTGCACGAGTGTAAAATCTCCAGCTTCCTGGTCACAA
ACGCACAGTTCCCTGCGGAAATCAGGAACCTCAAACCAGTTACCCAACTATATGTCAGTGTGGA
CGCTAGCACCAAAGAGAGCCTGAAGAAAATTGACCGCCCGCTCTTCAAGGATTTCTGGCAAAGA
TTCCTTGACAGTTTAAAAGCCTTGGCTGAAAAGCAACAACGTACTGTATACAGACTGACACTGG
TGAAAGCGTGGAACGTGGATGAGCTCCAGGCCTATGCCCAGCTGGTGTCCCTGGGGAGCCCCGA
CTTCATCGAGGTGAAGGGCGTTACCTACTGTGGAGAGAGTTCAGCGAGCAGTCTTACCATGGCC
AACGTGCCCTGGCACGAGGAAGTGGTGCGTTTTGTCTCGGAGTTGGTGGGTCTGATCCCCGACT
ACGAAATTGCTTGCGAACACGAACATTCCAACTGCCTCCTGATAGCTCACAAGAAGTGGCCTGG
AATAGAACCTGCAGTATCTCCGAGGTCTGCCTGTACATGTTAACCTTCGAGGAAAACGCCAGAC
TCCTTTACAAAGCGCTTGTACCATTTTGCATTTCTACCATTGGCGTATGAGAGTTCCACTTCCT
CTCGTGTACCCATA

hide sequence

RefSeq Acc Id:

XM_021086357 ⟹ XP_020942016

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	3	15,969,573 - 16,160,652 (-)	NCBI

Sequence:

show sequence

CCCGCCCCTTCCCCCTCTGAGCCAATCCAGACAGGCCTGCGAATGGCATGGCTGCCCCCAGTTT
CTCAGGCTCTGGGCACACGGCTAATGCTACAAGGAGGTTCTGGCGGTTTCCCAGTATTCGCGCC
GGACGCTAGGTTTGTTAGGTCCGCTGTCCTGGGCTCCAGTCGCGCCGCAGGACTTGGGCTCTAA
GAAGAATGGATCCTTTGGATACGTGGGACTTCTCCTCGCCTTTGATATCATTATGGATAAACAG
GTTTTACATATATTTGGGCTTAGCCTTTGGCTTTAGCCTTTGGATATGTTTCCAGATTGTTATC
AGGAAGCAGGACAAGAACTCACAGGAAAAGACTGTTCAAAATGCATCACGGAATTTGATGACCA
ATGGCTCTCTCTCTCTTGAAAGGAAGGAAGTCTTTGTGTCTGGAGTGAAGATTTTCTATGGTTC
CCAGACTGGCACAGCAAAGGGGTTTGCAGCAATTCTGGCAGAAGCAGTGACCTCCCTTGACCTG
CCTGTGGCAGTGGTGGATCTGAAGGCATATGATCCGGACGATTATCTGCTAGAAGAGGTCACTA
GTAAGAGTGTCTGTGCCTTCCTGGTTGCCACCTACACGGATGGTCGCCCGACGGAGAGCGCAGA
GTGGTTCTGCAAGTGGCTGGAGGAGGCAGCCAGTGACTTTCGATTTGGCAAAACCTACCTGAAG
GGTATGCGATATGCCGTGTTTGGCCTGGGAAACTCCGCCTATGCCAGCCACTTCAACAAGGTGG
GGAAGAACGTGGACAAGTGGCTGTGGATGCTGGGAGCTCATCGCGTGATGGCCCGTGGGGAGGG
TGACTGCGATGTGGTTAAAAGCAAACATGGCAGCATCGAGGCCGACTTCACAGCTTGGAAGGCC
AAGTTCATCTCCCGACTACAGGCACTCCGTCAGGGAGAGAGGAAGCCCTGCAGTGGTAACTGCA
GGAAAGGCAAGTGCGAGTCTCATCAGCGCGGCACAGGGCAAGCGGAGCCAGGGCCCCAGGCTCA
GGAGGGATTTCGTCGGAGAGATGCCGAGGAGGAGGAGCTCCTTGGGAGCACCAGTGAGGAGGAG
TCTGGCTCAGAGGACCAGCAGAGTGGCAGTTCTGTCATTGACGTCGAAGACCTCGGCCAAGTGA
TGGATCGTGTGAAGAAAGAAAAGAGAGAAAAGGCGCAGCAGGAAGGGGAAACTGGCGTGTTGAG
GAGTGCAGTGAAGAACGAAGCCAATGAACCAAGAGCTATGATAACTCCCGCTCTCCGAGAAGCC
CTTACTAAACAAGGTTATCAGCTGATTGGGAGCCACTCTGGGGTGAAGCTTTGCAGGTGGACAA
AGTCCATGCTCCGAGGGAGAGGAGGTTGCTATAAACATACATTCTATGGCATTGAAAGCCATCG
CTGCATGGAAACTACCCCAAGCTTGGCATGTGCGAATAAATGTGTCTTCTGTTGGCGGCACCAC
ACCAATCCAGTGGGTACTGAATGGCGGTGGAAGATGGACCAGCCTGATATCATCTTAAAGGAAG
CCATCGAAAACCATCAGAACATGATCAAGCAGTTTAAAGGAGTACCAGGTGTCAAGGAAGAACG
CTTTGAGGAAGGAATGACAGTCAAACACTGCGCCTTGTCCCTTGTGGGAGAACCCATCATGTAC
CCAGAAATCAACAGGTTTGTGAAGCTGCTGCACGAGTGTAAAATCTCCAGCTTCCTGGTCACAA
ACGCACAGTTCCCTGCGGAAATCAGGAACCTCAAACCAGTTACCCAACTATATGTCAGTGTGGA
CGCTAGCACCAAAGAGAGCCTGAAGAAAATTGACCGCCCGCTCTTCAAGGATTTCTGGCAAAGA
TTCCTTGACAGTTTAAAAGCCTTGGCTGAAAAGCAACAACGTACTGTATACAGACTGACACTGG
TGAAAGCGTGGAACGTGGATGAGCTCCAGGCCTATGCCCAGCTGGTGTCCCTGGGGAGCCCCGA
CTTCATCGAGGTGAAGGGCGTTACCTACTGTGGAGAGAGTTCAGCGAGCAGTCTTACCATGGCC
AACGTGCCCTGGCACGAGGAAGTGGTGCGTTTTGTCTCGGAGTTGGTGGGTCTGATCCCCGACT
ACGAAATTGCTTGCGAACACGAACATTCCAACTGCCTCCTGATAGCTCACAAGAAGAGATGAAA
ACTGAGGTTTGGAGACGTTTGACAACCTGCCCGAGGCAGCGCAGCCGGTCAGTGGCAGAGCTGA
GATTGAAATCCAAGTCTGGCCGACTCCAGGGGCCTTGTCGTGTGT

hide sequence

Protein Sequences


Protein RefSeqs	XP_003481058	(Get FASTA)	NCBI Sequence Viewer
	XP_020942015	(Get FASTA)	NCBI Sequence Viewer
	XP_020942016	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000008256.4
	ENSSSCP00000008259.5
	ENSSSCP00000040827
	ENSSSCP00000040827.2
	ENSSSCP00000061147.1
	ENSSSCP00000072954.2
	ENSSSCP00025036097.1
	ENSSSCP00040019484.1
	ENSSSCP00050027721.1
	ENSSSCP00050027729.1
	ENSSSCP00055028112.1
	ENSSSCP00065046017.1

RefSeq Acc Id:	XP_020942016 ⟸ XM_021086357
- Peptide Label:	isoform X3
- UniProtKB:	A0A8D1MPC9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDPLDTWDFSSPLISLWINRFYIYLGLAFGFSLWICFQIVIRKQDKNSQEKTVQNASRNLMTNG SLSLERKEVFVSGVKIFYGSQTGTAKGFAAILAEAVTSLDLPVAVVDLKAYDPDDYLLEEVTSK SVCAFLVATYTDGRPTESAEWFCKWLEEAASDFRFGKTYLKGMRYAVFGLGNSAYASHFNKVGK NVDKWLWMLGAHRVMARGEGDCDVVKSKHGSIEADFTAWKAKFISRLQALRQGERKPCSGNCRK GKCESHQRGTGQAEPGPQAQEGFRRRDAEEEELLGSTSEEESGSEDQQSGSSVIDVEDLGQVMD RVKKEKREKAQQEGETGVLRSAVKNEANEPRAMITPALREALTKQGYQLIGSHSGVKLCRWTKS MLRGRGGCYKHTFYGIESHRCMETTPSLACANKCVFCWRHHTNPVGTEWRWKMDQPDIILKEAI ENHQNMIKQFKGVPGVKEERFEEGMTVKHCALSLVGEPIMYPEINRFVKLLHECKISSFLVTNA QFPAEIRNLKPVTQLYVSVDASTKESLKKIDRPLFKDFWQRFLDSLKALAEKQQRTVYRLTLVK AWNVDELQAYAQLVSLGSPDFIEVKGVTYCGESSASSLTMANVPWHEEVVRFVSELVGLIPDYE IACEHEHSNCLLIAHKKR hide sequence

RefSeq Acc Id:	XP_020942015 ⟸ XM_021086356
- Peptide Label:	isoform X2
- UniProtKB:	A0A8D1MPC9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDPLDTWDFSSPLISLWINRFYIYLGLAFGFSLWICFQIVIRKQDKNSQEKTVQNASRNLMTNG SLSLERKEVFVSGVKIFYGSQTGTAKGFAAILAEAVTSLDLPVAVVDLKAYDPDDYLLEEVTSK SVCAFLVATYTDGRPTESAEWFCKWLEEAASDFRFGKTYLKGMRYAVFGLGNSAYASHFNKVGK NVDKWLWMLGAHRVMARGEGDCDVVKSKHGSIEADFTAWKAKFISRLQALRQGERKPCSGNCRK GKCESHQRGTGQAEPGPQAQEGFRRRDAEEEELLGSTSEEESGSEDQQSGSSVIDVEDLGQVMD RVKKEKREKAQQEGETGVLRSAVKNEANEPRAMITPALREALTKQGYQLIGSHSGVKLCRWTKS MLRGRGGCYKHTFYGIESHRCMETTPSLACANKCVFCWRHHTNPVGTEWRWKMDQPDIILKEAI ENHQNMIKQFKGVPGVKEERFEEGMTVKHCALSLVGEPIMYPEINRFVKLLHECKISSFLVTNA QFPAEIRNLKPVTQLYVSVDASTKESLKKIDRPLFKDFWQRFLDSLKALAEKQQRTVYRLTLVK AWNVDELQAYAQLVSLGSPDFIEVKGVTYCGESSASSLTMANVPWHEEVVRFVSELVGLIPDYE IACEHEHSNCLLIAHKKWPGIEPAVSPRSACTC hide sequence

RefSeq Acc Id:	XP_003481058 ⟸ XM_003481010
- Peptide Label:	isoform X1
- UniProtKB:	A0A8D1R1C6 (UniProtKB/TrEMBL), A0A8D0SSZ8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDPLDTWDFSSPLISLWINRFYIYLGLAFGFSLWICFQIVIRKQDKNSQEKTVQNASRNLMTNG SLSLERKEVFVSGVKIFYGSQTGTAKGFAAILAEAVTSLDLPVAVVDLKAYDPDDYLLEEVTSK SVCAFLVATYTDGRPTESAEWFCKWLEEAASDFRFGKTYLKGMRYAVFGLGNSAYASHFNKVGK NVDKWLWMLGAHRVMARGEGDCDVVKSKHGSIEADFTAWKAKFISRLQALRQGERKPCSGNCRK GKCESHQRGTGQAEPGPQAQEGFRRRDAEEEELLGSTSEEESGSEDQQSGSSVIDVEDLGQVMD RVKKEKREKAQQEGETGVLRSAVKNEANEPRAMITPALREALTKQGYQLIGSHSGVKLCRWTKS MLRGRGGCYKHTFYGIESHRCMETTPSLACANKCVFCWRHHTNPVGTEWRWKMDQPDIILKEAI ENHQNMIKQFKGVPGVKEERFEEGMTVKHCALSLVGEPIMYPEINRFVKLLHECKISSFLVTNA QFPAEIRNLKPVTQLYVSVDASTKESLKKIDRPLFKDFWQRFLDSLKALAEKQQRTVYRLTLVK AWNVDELQAYAQLVSLGSPDFIEVKGVTYCGESSASSLTMANVPWHEEVVRFVSELVGLIPDYE IACEHEHSNCLLIAHKKFKIGREWWTWIDYNRFQELIQEYEDSGGSKTFSAKDYMARTPHWALF GASERGFDPKDTRYQRKNKAKDISGC hide sequence

Protein Domains

Flavodoxin-like Radical SAM core

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000007733	ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00025060086	UniProtKB/TrEMBL
	ENSSSCG00040034526	UniProtKB/TrEMBL
	ENSSSCG00050047224	UniProtKB/TrEMBL
	ENSSSCG00055017784	UniProtKB/TrEMBL
	ENSSSCG00065075324	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000008475.5	UniProtKB/TrEMBL
	ENSSSCT00000008478.5	UniProtKB/TrEMBL
	ENSSSCT00000065883	ENTREZGENE
	ENSSSCT00000065883.3	UniProtKB/TrEMBL
	ENSSSCT00000078596.1	UniProtKB/TrEMBL
	ENSSSCT00000089284.2	UniProtKB/TrEMBL
	ENSSSCT00025083048.1	UniProtKB/TrEMBL
	ENSSSCT00040046448.1	UniProtKB/TrEMBL
	ENSSSCT00050064354.1	UniProtKB/TrEMBL
	ENSSSCT00050064369.1	UniProtKB/TrEMBL
	ENSSSCT00055035401.1	UniProtKB/TrEMBL
	ENSSSCT00065103966.1	UniProtKB/TrEMBL
Gene3D-CATH	3.20.20.70	UniProtKB/TrEMBL
	3.40.50.360	UniProtKB/TrEMBL
	EF-hand	UniProtKB/TrEMBL
InterPro	Aldolase_TIM	UniProtKB/TrEMBL
	Ca-binding_regulatory	UniProtKB/TrEMBL
	EF-hand-dom_pair	UniProtKB/TrEMBL
	EF_Hand_1_Ca_BS	UniProtKB/TrEMBL
	EF_hand_dom	UniProtKB/TrEMBL
	Flavdoxin-like	UniProtKB/TrEMBL
	Flavodoxin/NO_synth	UniProtKB/TrEMBL
	Flavoprotein-like_sf	UniProtKB/TrEMBL
	rSAM	UniProtKB/TrEMBL
	S100/CaBP7/8-like_CS	UniProtKB/TrEMBL
	tRNA_wybutosine-synth	UniProtKB/TrEMBL
	tRNA_wybutosine-synthase	UniProtKB/TrEMBL
KEGG Report	ssc:100516854	UniProtKB/TrEMBL
NCBI Gene	TYW1	ENTREZGENE
PANTHER	CALCIUM-BINDING PROTEIN 8	UniProtKB/TrEMBL
	CALCIUM-BINDING PROTEIN 8-RELATED	UniProtKB/TrEMBL
	PTHR13930	UniProtKB/TrEMBL
	S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE TYW1-RELATED	UniProtKB/TrEMBL
Pfam	EF-hand_7	UniProtKB/TrEMBL
	Flavodoxin_1	UniProtKB/TrEMBL
	Radical_SAM	UniProtKB/TrEMBL
	Wyosine_form	UniProtKB/TrEMBL
PRINTS	FLAVODOXIN	UniProtKB/TrEMBL
PROSITE	EF_HAND_1	UniProtKB/TrEMBL
	EF_HAND_2	UniProtKB/TrEMBL
	FLAVODOXIN_LIKE	UniProtKB/TrEMBL
	RADICAL_SAM	UniProtKB/TrEMBL
	S100_CABP	UniProtKB/TrEMBL
SMART	EFh	UniProtKB/TrEMBL
Superfamily-SCOP	Radical SAM enzymes	UniProtKB/TrEMBL
	SSF47473	UniProtKB/TrEMBL
	SSF52218	UniProtKB/TrEMBL
UniProt	A0A287AAJ1_PIG	UniProtKB/TrEMBL
	A0A4X1SU95_PIG	UniProtKB/TrEMBL
	A0A5G2QAU9_PIG	UniProtKB/TrEMBL
	A0A5G2R9F4_PIG	UniProtKB/TrEMBL
	A0A8D0SSZ8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1MPC9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1R1C6	ENTREZGENE, UniProtKB/TrEMBL
	F1RJJ2_PIG	UniProtKB/TrEMBL
UniProt Secondary	F1RJJ5	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar