Tyw1 (tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)) - Rat Genome Database

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Gene: Tyw1 (tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)) Mus musculus
Analyze
Symbol: Tyw1
Name: tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)
RGD ID: 1550205
MGI Page MGI
Description: Predicted to enable 4 iron, 4 sulfur cluster binding activity; ion binding activity; and tRNA-4-demethylwyosine synthase activity. Predicted to be involved in wybutosine biosynthetic process. Is expressed in several structures, including alimentary system; brain; cardiovascular system; genitourinary system; and respiratory system. Orthologous to human TYW1 (tRNA-yW synthesizing protein 1 homolog) and TYW1B (tRNA-yW synthesizing protein 1 homolog B).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AW125391; radical S-adenosyl methionine and flavodoxin domain-containing protein 1; radical S-adenosyl methionine and flavodoxin domains 1; Rsa; Rsafd1; S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase; S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase TYW1; tRNA wybutosine-synthesizing protein 1 homolog; tRNA-yW-synthesizing protein
RGD Orthologs
Human
Rat
Dog
Pig
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm12161  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395130,284,460 - 130,370,408 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5130,284,460 - 130,370,404 (+)EnsemblGRCm39 Ensembl
GRCm385130,255,572 - 130,341,568 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5130,255,619 - 130,341,563 (+)EnsemblGRCm38mm10GRCm38
MGSCv375130,731,489 - 130,817,437 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365130,540,322 - 130,625,860 (+)NCBIMGSCv36mm8
Celera5127,268,547 - 127,354,754 (+)NCBICelera
Cytogenetic Map5G1.3NCBI
cM Map569.0NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:18799693   PMID:21677750   PMID:21873635   PMID:22442722   PMID:24194600   PMID:28378742   PMID:32554809  


Genomics

Comparative Map Data
Tyw1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395130,284,460 - 130,370,408 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5130,284,460 - 130,370,404 (+)EnsemblGRCm39 Ensembl
GRCm385130,255,572 - 130,341,568 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5130,255,619 - 130,341,563 (+)EnsemblGRCm38mm10GRCm38
MGSCv375130,731,489 - 130,817,437 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365130,540,322 - 130,625,860 (+)NCBIMGSCv36mm8
Celera5127,268,547 - 127,354,754 (+)NCBICelera
Cytogenetic Map5G1.3NCBI
cM Map569.0NCBI
TYW1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38766,996,833 - 67,239,514 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl766,995,173 - 67,239,514 (+)EnsemblGRCh38hg38GRCh38
GRCh37766,461,820 - 66,704,501 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36766,099,252 - 66,341,934 (+)NCBINCBI36Build 36hg18NCBI36
Build 34765,905,966 - 66,148,646NCBI
Celera765,404,719 - 65,654,392 (-)NCBICelera
Cytogenetic Map7q11.21NCBI
HuRef762,645,117 - 62,888,045 (+)NCBIHuRef
CHM1_1766,557,015 - 66,797,606 (+)NCBICHM1_1
T2T-CHM13v2.0768,216,506 - 68,459,212 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2765,799,354 - 66,042,069 (+)NCBI
Tyw1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81231,968,198 - 32,054,454 (-)NCBIGRCr8
mRatBN7.21226,332,020 - 26,418,286 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1226,330,351 - 26,418,208 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1227,480,231 - 27,566,470 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01228,090,756 - 28,176,978 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01227,149,061 - 27,235,174 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01229,824,990 - 29,919,240 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1229,824,981 - 29,919,320 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01231,761,916 - 31,856,112 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01231,135,209 - 31,178,761 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41227,368,907 - 27,455,110 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11227,232,122 - 27,318,272 (-)NCBI
Celera1228,046,508 - 28,132,529 (-)NCBICelera
Cytogenetic Map12q12NCBI
LOC479708
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.161,263,661 - 1,502,800 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha62,963,338 - 3,202,262 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.061,068,769 - 1,314,298 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.161,003,760 - 1,243,099 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.061,005,554 - 1,251,074 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.061,177,346 - 1,423,042 (+)NCBIUU_Cfam_GSD_1.0
TYW1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1315,969,573 - 16,160,652 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2316,268,153 - 16,407,307 (-)NCBISscrofa10.2Sscrofa10.2susScr3

Variants

.
Variants in Tyw1
3413 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2752
Count of miRNA genes:900
Interacting mature miRNAs:1230
Transcripts:ENSMUST00000040213, ENSMUST00000044204, ENSMUST00000100662, ENSMUST00000147619, ENSMUST00000173375
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)570057343132528839Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574460661132528839Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
1300940Actd3_mactivity-distance traveled 3 (mouse)Not determined596320385130320533Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined597021753131021986Mouse
1301858Smdq1_msegregation of mitochondrial DNA QTL 1 (mouse)Not determined597021753131021986Mouse
12904945Tammq2_mtibialis anterior muscle mass QTL 2 (mouse)5100665965134665965Mouse
12904959Smmq1_msoleus muscle mass QTL 1 (mouse)5100665965134665965Mouse
12859290Criq2_mCitrobacter rodentium infection QTL 2 (mouse)5101332579135332579Mouse
1301624Aevm2_mautoimmune extremity vasculitis in MRL mice 2 (mouse)Not determined5101863832135864028Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
11532736Sluc33b_msusceptibility to lung cancer 33b (mouse)5102945037136945196Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104583688138555455Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104705939138705939Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107906299141906412Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107906299141906412Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107906299141906412Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109167240143167381Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109167240143167381Mouse
1301543Hypch_mhypercholesterolemia (mouse)Not determined5109238624139118905Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109439348143439459Mouse
1301102Cia14_mcollagen induced arthritis 14 (mouse)Not determined5113320385138555455Mouse
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115156883149157015Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115156883149157015Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118948964151758149Mouse
10412191Bbaa24_mB.burgdorferi-associated arthritis 24 (mouse)Not determined5119945037141700466Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119945037149347326Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121455402151758149Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121555236151758149Mouse
1302079Lbw3_mlupus NZB x NZW 3 (mouse)Not determined5124700335151758149Mouse
1301363Pbwg13_mpostnatal body weight growth 13 (mouse)Not determined5125133457151758149Mouse
1301715Elmaz2_melevated maze behavior 2 (mouse)Not determined5125178229141700466Mouse
4141218Ath24_matherosclerosis 24 (mouse)Not determined129520084151758149Mouse
12880406Jcdq2_mjoint cartilage degeneration QTL 2 (mouse)5129787831151758149Mouse

Markers in Region
D5Mit245  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385130,300,108 - 130,300,252UniSTSGRCm38
MGSCv375130,775,978 - 130,776,122UniSTSGRCm37
Celera5127,313,163 - 127,313,307UniSTS
Cytogenetic Map5G1.3UniSTS
cM Map572.0UniSTS
Whitehead Genetic562.3UniSTS
Sbds  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385130,253,998 - 130,255,299UniSTSGRCm38
MGSCv375130,729,868 - 130,731,169UniSTSGRCm37
Celera5127,266,926 - 127,268,227UniSTS
Cytogenetic Map5G1.3UniSTS
cM Map5 UniSTS
AW125391  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385130,340,928 - 130,341,018UniSTSGRCm38
MGSCv375130,816,798 - 130,816,888UniSTSGRCm37
Celera5127,354,115 - 127,354,205UniSTS
Cytogenetic Map5G1.3UniSTS
Whitehead/MRC_RH51566.13UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001015876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_178897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_153350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_188930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_868551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB619468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC068126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY670442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD551326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000040213   ⟹   ENSMUSP00000037173
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5130,285,876 - 130,370,404 (+)Ensembl
GRCm38.p6 Ensembl5130,257,035 - 130,341,563 (+)Ensembl
RefSeq Acc Id: ENSMUST00000044204   ⟹   ENSMUSP00000047318
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5130,284,460 - 130,314,227 (+)Ensembl
GRCm38.p6 Ensembl5130,255,619 - 130,285,386 (+)Ensembl
RefSeq Acc Id: ENSMUST00000100662   ⟹   ENSMUSP00000098226
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5130,285,876 - 130,306,590 (+)Ensembl
GRCm38.p6 Ensembl5130,257,035 - 130,277,749 (+)Ensembl
RefSeq Acc Id: ENSMUST00000147619   ⟹   ENSMUSP00000123693
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5130,287,771 - 130,298,232 (+)Ensembl
GRCm38.p6 Ensembl5130,258,930 - 130,269,391 (+)Ensembl
RefSeq Acc Id: ENSMUST00000173375
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5130,284,460 - 130,314,227 (+)Ensembl
GRCm38.p6 Ensembl5130,255,619 - 130,285,386 (+)Ensembl
RefSeq Acc Id: NM_001015876   ⟹   NP_001015876
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395130,285,876 - 130,370,404 (+)NCBI
GRCm385130,257,037 - 130,341,567 (+)NCBI
MGSCv375130,731,489 - 130,817,437 (+)RGD
Celera5127,268,547 - 127,354,754 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001424774   ⟹   NP_001411703
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395130,284,463 - 130,370,404 (+)NCBI
RefSeq Acc Id: NM_001424775   ⟹   NP_001411704
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395130,284,463 - 130,370,404 (+)NCBI
RefSeq Acc Id: NM_001424776   ⟹   NP_001411705
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395130,285,876 - 130,370,404 (+)NCBI
RefSeq Acc Id: NM_001424777   ⟹   NP_001411706
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395130,285,876 - 130,370,404 (+)NCBI
RefSeq Acc Id: NM_001424778   ⟹   NP_001411707
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395130,285,876 - 130,370,404 (+)NCBI
RefSeq Acc Id: NM_001424779   ⟹   NP_001411708
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395130,285,876 - 130,370,404 (+)NCBI
RefSeq Acc Id: NM_001424780   ⟹   NP_001411709
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395130,285,876 - 130,306,594 (+)NCBI
RefSeq Acc Id: NM_001424782   ⟹   NP_001411711
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395130,285,876 - 130,370,404 (+)NCBI
RefSeq Acc Id: NM_178897   ⟹   NP_849228
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395130,284,460 - 130,314,227 (+)NCBI
GRCm385130,255,619 - 130,285,386 (+)NCBI
MGSCv375130,731,489 - 130,817,437 (+)RGD
Celera5127,268,547 - 127,354,754 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_153350
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395130,285,878 - 130,370,408 (+)NCBI
GRCm385130,257,037 - 130,341,567 (+)NCBI
Sequence:
RefSeq Acc Id: NR_188930
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395130,285,876 - 130,370,404 (+)NCBI
RefSeq Acc Id: XR_868551
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395130,285,849 - 130,313,670 (+)NCBI
GRCm385130,257,034 - 130,284,829 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_849228   ⟸   NM_178897
- Peptide Label: isoform 2
- UniProtKB: A0A0R4J0L2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001015876   ⟸   NM_001015876
- Peptide Label: isoform 1
- UniProtKB: Q8BLG4 (UniProtKB/Swiss-Prot),   Q3TRC5 (UniProtKB/Swiss-Prot),   Q8R0C7 (UniProtKB/Swiss-Prot),   Q8BJM7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000037173   ⟸   ENSMUST00000040213
RefSeq Acc Id: ENSMUSP00000123693   ⟸   ENSMUST00000147619
RefSeq Acc Id: ENSMUSP00000098226   ⟸   ENSMUST00000100662
RefSeq Acc Id: ENSMUSP00000047318   ⟸   ENSMUST00000044204
RefSeq Acc Id: NP_001411703   ⟸   NM_001424774
- Peptide Label: isoform 1
- UniProtKB: Q8R0C7 (UniProtKB/Swiss-Prot),   Q8BLG4 (UniProtKB/Swiss-Prot),   Q8BJM7 (UniProtKB/Swiss-Prot),   Q3TRC5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001411704   ⟸   NM_001424775
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001411711   ⟸   NM_001424782
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001411705   ⟸   NM_001424776
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001411708   ⟸   NM_001424779
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001411707   ⟸   NM_001424778
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001411706   ⟸   NM_001424777
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001411709   ⟸   NM_001424780
- Peptide Label: isoform 5
Protein Domains
Flavodoxin-like   Radical SAM core

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BJM7-F1-model_v2 AlphaFold Q8BJM7 1-721 view protein structure

Promoters
RGD ID:6888224
Promoter ID:EPDNEW_M7563
Type:multiple initiation site
Name:Tyw1_2
Description:Mus musculus tRNA-yW synthesizing protein 1 homolog , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M7564  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385130,255,622 - 130,255,682EPDNEW
RGD ID:6888226
Promoter ID:EPDNEW_M7564
Type:initiation region
Name:Tyw1_1
Description:Mus musculus tRNA-yW synthesizing protein 1 homolog , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M7563  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385130,257,060 - 130,257,120EPDNEW
RGD ID:6838568
Promoter ID:MM_KWN:44254
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_178897,   OTTMUST00000069123,   OTTMUST00000069124,   UC008ZUK.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365130,731,041 - 130,731,541 (+)MPROMDB
RGD ID:6838567
Promoter ID:MM_KWN:44255
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000069142,   OTTMUST00000069144
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365130,732,559 - 130,733,059 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2141161 AgrOrtholog
Ensembl Genes ENSMUSG00000056310 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000040213 ENTREZGENE
  ENSMUST00000040213.13 UniProtKB/Swiss-Prot
  ENSMUST00000044204 ENTREZGENE
  ENSMUST00000044204.12 UniProtKB/TrEMBL
  ENSMUST00000100662.10 UniProtKB/Swiss-Prot
  ENSMUST00000147619.2 UniProtKB/TrEMBL
Gene3D-CATH 3.20.20.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.360 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Aldolase_TIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Flavdoxin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Flavodoxin/NO_synth UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Flavoprotein-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  rSAM UniProtKB/Swiss-Prot
  tRNA_wybutosine-synth UniProtKB/Swiss-Prot
  tRNA_wybutosine-synthase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:100929 UniProtKB/Swiss-Prot
MGD MGI:2141161 ENTREZGENE
NCBI Gene 100929 ENTREZGENE
PANTHER PTHR13930 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE TYW1-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Flavodoxin_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Radical_SAM UniProtKB/Swiss-Prot
  Wyosine_form UniProtKB/Swiss-Prot
PhenoGen Tyw1 PhenoGen
PRINTS FLAVODOXIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE FLAVODOXIN_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RADICAL_SAM UniProtKB/Swiss-Prot
Superfamily-SCOP Radical SAM enzymes UniProtKB/Swiss-Prot
  SSF52218 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0R4J0L2 ENTREZGENE, UniProtKB/TrEMBL
  F6VNP0_MOUSE UniProtKB/TrEMBL
  Q3TRC5 ENTREZGENE
  Q8BJM7 ENTREZGENE
  Q8BLG4 ENTREZGENE
  Q8R0C7 ENTREZGENE
  TYW1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3TRC5 UniProtKB/Swiss-Prot
  Q8BLG4 UniProtKB/Swiss-Prot
  Q8R0C7 UniProtKB/Swiss-Prot