LOC110257935 (matrix-remodeling-associated protein 5-like) - Rat Genome Database

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Gene: LOC110257935 (matrix-remodeling-associated protein 5-like) Sus scrofa
Analyze
Symbol: LOC110257935
Name: matrix-remodeling-associated protein 5-like
RGD ID: 13908174
Description: INVOLVED IN response to transforming growth factor beta (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Dwarfism (ortholog); lung non-small cell carcinoma (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1Y6,511,350 - 6,524,989 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC110257935
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1Y6,511,350 - 6,524,989 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
MXRA5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X3,308,565 - 3,346,652 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX3,308,565 - 3,346,652 (-)EnsemblGRCh38hg38GRCh38
GRCh37X3,226,606 - 3,264,693 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X3,236,606 - 3,274,681 (-)NCBINCBI36Build 36hg18NCBI36
CeleraX7,506,768 - 7,545,904 (-)NCBICelera
Cytogenetic MapXp22.33NCBI
HuRefX1,169,098 - 1,208,180 (-)NCBIHuRef
CHM1_1X3,257,299 - 3,295,226 (-)NCBICHM1_1
T2T-CHM13v2.0X2,922,161 - 2,960,959 (-)NCBIT2T-CHM13v2.0
MXRA5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X1,525,422 - 1,563,711 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660563,420,371 - 3,454,413 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mxra5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248341,502,409 - 1,535,098 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248341,502,487 - 1,535,177 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in LOC110257935
15 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 17 3 5 14 12 17 3 5 1

Sequence


RefSeq Acc Id: XM_021080944   ⟹   XP_020936603
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1Y6,511,350 - 6,524,989 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020936603 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_020936603   ⟸   XM_021080944
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene LOC110257935 ENTREZGENE