LOC100155267 (histone H2B type 2-F-like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC100155267 (histone H2B type 2-F-like) Sus scrofa
Analyze
No known orthologs.
Symbol: LOC100155267
Name: histone H2B type 2-F-like
RGD ID: 13866214
Description: ENCODES a protein that exhibits DNA binding (inferred); protein heterodimerization activity (inferred); structural constituent of chromatin (inferred); FOUND IN nucleosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11445,760,877 - 45,761,561 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21448,724,734 - 48,725,904 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleosome  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in LOC100155267
19 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 4 4 3 5 2 20 2 3
Below cutoff 2 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021074055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_021074055   ⟹   XP_020929714
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11445,760,877 - 45,761,561 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020929714   ⟸   XM_021074055
- UniProtKB: A0A4X1SG32 (UniProtKB/TrEMBL),   F1RFJ3 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Histone H2A/H2B/H3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009969 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015054911 UniProtKB/TrEMBL
  ENSSSCG00025048276 UniProtKB/TrEMBL
  ENSSSCG00030035468 UniProtKB/TrEMBL
  ENSSSCG00040061387 UniProtKB/TrEMBL
  ENSSSCG00045038704 UniProtKB/TrEMBL
  ENSSSCG00055024052 UniProtKB/TrEMBL
  ENSSSCG00070000684 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010925 ENTREZGENE
  ENSSSCT00000010925.3 UniProtKB/TrEMBL
  ENSSSCT00015073102.1 UniProtKB/TrEMBL
  ENSSSCT00025065647.1 UniProtKB/TrEMBL
  ENSSSCT00030049157.1 UniProtKB/TrEMBL
  ENSSSCT00040083523.1 UniProtKB/TrEMBL
  ENSSSCT00045067176.1 UniProtKB/TrEMBL
  ENSSSCT00055047361.1 UniProtKB/TrEMBL
  ENSSSCT00070001269.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
InterPro Histone-fold UniProtKB/TrEMBL
  Histone_H2A/H2B/H3 UniProtKB/TrEMBL
  Histone_H2B UniProtKB/TrEMBL
NCBI Gene LOC100155267 ENTREZGENE
PANTHER HISTONE H2B TYPE 2-F UniProtKB/TrEMBL
  PTHR23428 UniProtKB/TrEMBL
Pfam Histone UniProtKB/TrEMBL
PRINTS HISTONEH2B UniProtKB/TrEMBL
SMART H2B UniProtKB/TrEMBL
Superfamily-SCOP SSF47113 UniProtKB/TrEMBL
UniProt A0A4X1SG32 ENTREZGENE, UniProtKB/TrEMBL
  F1RFJ3 ENTREZGENE, UniProtKB/TrEMBL