CRYGN (crystallin gamma N) - Rat Genome Database

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Gene: CRYGN (crystallin gamma N) Sus scrofa
Analyze
Symbol: CRYGN
Name: crystallin gamma N
RGD ID: 13862147
Description: ENCODES a protein that exhibits structural constituent of eye lens (inferred); ASSOCIATED WITH lethal congenital glycogen storage disease of heart (ortholog); long QT syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: gamma-crystallin N
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl185,839,825 - 5,849,914 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1185,840,024 - 5,848,163 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2186,308,921 - 6,318,870 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CRYGN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl185,839,825 - 5,849,914 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1185,840,024 - 5,848,163 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2186,308,921 - 6,318,870 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CRYGN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387151,428,832 - 151,440,813 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7151,428,832 - 151,440,813 (-)EnsemblGRCh38hg38GRCh38
GRCh377151,125,918 - 151,137,899 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367150,757,989 - 150,768,032 (-)NCBINCBI36Build 36hg18NCBI36
Build 347150,564,704 - 150,574,747NCBI
Celera7145,684,532 - 145,694,575 (-)NCBICelera
Cytogenetic Map7q36.1NCBI
HuRef7144,938,635 - 144,948,676 (-)NCBIHuRef
CHM1_17151,135,454 - 151,145,497 (-)NCBICHM1_1
T2T-CHM13v2.07152,601,666 - 152,613,647 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27150,456,639 - 150,466,682 (-)NCBI
Crygn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39524,956,000 - 24,962,846 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl524,956,001 - 24,963,006 (-)EnsemblGRCm39 Ensembl
GRCm38524,751,002 - 24,757,848 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl524,751,003 - 24,758,008 (-)EnsemblGRCm38mm10GRCm38
MGSCv37524,256,820 - 24,263,661 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36524,261,068 - 24,267,908 (-)NCBIMGSCv36mm8
Celera521,706,417 - 21,709,663 (-)NCBICelera
Cytogenetic Map5A3NCBI
cM Map511.93NCBI
Crygn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8411,286,475 - 11,294,002 (+)NCBIGRCr8
mRatBN7.2410,394,015 - 10,401,542 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl410,394,020 - 10,401,543 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx415,539,981 - 15,547,506 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0411,360,172 - 11,367,701 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.049,711,966 - 9,719,495 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.046,900,811 - 6,909,167 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl46,903,198 - 6,909,167 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.046,915,267 - 6,923,284 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.445,772,670 - 5,778,384 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.145,772,497 - 5,778,331 (+)NCBI
Celera46,010,741 - 6,016,453 (+)NCBICelera
Cytogenetic Map4q11NCBI
Crygn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554915,780,537 - 5,788,655 (-)NCBIChiLan1.0ChiLan1.0
CRYGN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26187,848,016 - 187,862,433 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1739,858,282 - 39,872,699 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07143,015,345 - 143,027,237 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17155,166,011 - 155,177,359 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7155,166,011 - 155,177,359 (-)Ensemblpanpan1.1panPan2
CRYGN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11615,416,628 - 15,427,664 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1615,414,814 - 15,422,940 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1616,024,111 - 16,035,068 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01617,138,744 - 17,149,734 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1617,136,930 - 17,145,053 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11615,511,029 - 15,521,992 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01616,092,346 - 16,103,272 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01616,143,022 - 16,153,974 (-)NCBIUU_Cfam_GSD_1.0
Crygn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051186,094,449 - 6,101,242 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365276,803,428 - 6,807,078 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365276,804,193 - 6,808,558 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRYGN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121119,609,764 - 119,621,449 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21119,612,087 - 119,618,488 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607215,579,861 - 15,591,128 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Crygn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248005,273,128 - 5,278,955 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248005,273,128 - 5,278,955 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CRYGN
256 total Variants

Expression

RNA-SEQ Expression

circulatory system
hemolymphoid system
mesoderm
1 1 1

Sequence


Ensembl Acc Id: ENSSSCT00000059580   ⟹   ENSSSCP00000054834
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl185,840,012 - 5,848,740 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000059982   ⟹   ENSSSCP00000038619
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl185,839,825 - 5,849,795 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000088224   ⟹   ENSSSCP00000061687
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl185,839,825 - 5,849,914 (+)Ensembl
RefSeq Acc Id: XM_021079182   ⟹   XP_020934841
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1185,840,024 - 5,848,163 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020934841 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000038619
  ENSSSCP00000038619.2
  ENSSSCP00000061687.1
  ENSSSCP00025028033.1
  ENSSSCP00070029914.1
RefSeq Acc Id: XP_020934841   ⟸   XM_021079182
- UniProtKB: A0A287BE61 (UniProtKB/TrEMBL),   A0A4X1UNZ7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000061687   ⟸   ENSSSCT00000088224
Ensembl Acc Id: ENSSSCP00000054834   ⟸   ENSSSCT00000059580
Ensembl Acc Id: ENSSSCP00000038619   ⟸   ENSSSCT00000059982
Protein Domains
Beta/gamma crystallin 'Greek key'


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000038413 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025048209 UniProtKB/TrEMBL
  ENSSSCG00070018139 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000059982 ENTREZGENE
  ENSSSCT00000059982.3 UniProtKB/TrEMBL
  ENSSSCT00000088224.2 UniProtKB/TrEMBL
  ENSSSCT00025065716.1 UniProtKB/TrEMBL
  ENSSSCT00070035799.1 UniProtKB/TrEMBL
Gene3D-CATH Crystallins UniProtKB/TrEMBL
InterPro Beta/Gamma-Crystallin UniProtKB/TrEMBL
  Beta/gamma_crystallin UniProtKB/TrEMBL
  G_crystallin-like UniProtKB/TrEMBL
NCBI Gene CRYGN ENTREZGENE
PANTHER BETA/GAMMA CRYSTALLIN UniProtKB/TrEMBL
  GAMMA-CRYSTALLIN N UniProtKB/TrEMBL
Pfam Crystall UniProtKB/TrEMBL
PRINTS BGCRYSTALLIN UniProtKB/TrEMBL
PROSITE CRYSTALLIN_BETA_GAMMA UniProtKB/TrEMBL
SMART XTALbg UniProtKB/TrEMBL
Superfamily-SCOP SSF49695 UniProtKB/TrEMBL
UniProt A0A287A3S6_PIG UniProtKB/TrEMBL
  A0A287BE61 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UNZ7 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QB60_PIG UniProtKB/TrEMBL
VGNC ID VGNC:87021 ENTREZGENE