Crygn (crystallin gamma N) - Rat Genome Database

Name: Crygn
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Crygn (crystallin gamma N) Chinchilla lanigera

Analyze

Symbol:

Crygn

Name:

crystallin gamma N

RGD ID:

8855312

Description:

ASSOCIATED WITH genetic disease (ortholog); lethal congenital glycogen storage disease of heart (ortholog); long QT syndrome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

crystallin, gamma N; gamma-crystallin N

RGD Orthologs

Alliance Genes

More Info

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More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CRYGN (crystallin gamma N)	NCBI	Ortholog
Mus musculus (house mouse):	Crygn (crystallin, gamma N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Crygn (crystallin, gamma N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CRYGN (crystallin gamma N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CRYGN (crystallin gamma N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Crygn (crystallin gamma N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CRYGN (crystallin gamma N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CRYGN (crystallin gamma N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Crygn (crystallin gamma N)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955491	5,780,537 - 5,788,655 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

lethal congenital glycogen storage disease of heart (ISO)

long QT syndrome (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Crygn
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955491	5,780,537 - 5,788,655 (-)	NCBI	ChiLan1.0	ChiLan1.0

CRYGN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	151,428,832 - 151,440,813 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	151,428,832 - 151,440,813 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	151,125,918 - 151,137,899 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	150,757,989 - 150,768,032 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	150,564,704 - 150,574,747	NCBI
Celera	7	145,684,532 - 145,694,575 (-)	NCBI		Celera
Cytogenetic Map	7	q36.1	NCBI
HuRef	7	144,938,635 - 144,948,676 (-)	NCBI		HuRef
CHM1_1	7	151,135,454 - 151,145,497 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	152,601,666 - 152,613,647 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	150,456,639 - 150,466,682 (-)	NCBI

Crygn
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	24,956,000 - 24,962,846 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	24,956,001 - 24,963,006 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	24,751,002 - 24,757,848 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	24,751,003 - 24,758,008 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	24,256,820 - 24,263,661 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	24,261,068 - 24,267,908 (-)	NCBI		MGSCv36	mm8
Celera	5	21,706,417 - 21,709,663 (-)	NCBI		Celera
Cytogenetic Map	5	A3	NCBI
cM Map	5	11.93	NCBI

Crygn
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	11,286,475 - 11,294,002 (+)	NCBI		GRCr8
mRatBN7.2	4	10,394,015 - 10,401,542 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	10,394,020 - 10,401,543 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	15,539,981 - 15,547,506 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	11,360,172 - 11,367,701 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	9,711,966 - 9,719,495 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	6,900,811 - 6,909,167 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	6,903,198 - 6,909,167 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	6,915,267 - 6,923,284 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	5,772,670 - 5,778,384 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	5,772,497 - 5,778,331 (+)	NCBI
Celera	4	6,010,741 - 6,016,453 (+)	NCBI		Celera
Cytogenetic Map	4	q11	NCBI

CRYGN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	187,848,016 - 187,862,433 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	39,858,282 - 39,872,699 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	143,015,345 - 143,027,237 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	155,166,011 - 155,177,359 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	155,166,011 - 155,177,359 (-)	Ensembl	panpan1.1		panPan2

CRYGN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	15,416,628 - 15,427,664 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	15,414,814 - 15,422,940 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	16,024,111 - 16,035,068 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	17,138,744 - 17,149,734 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	17,136,930 - 17,145,053 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	16	15,511,029 - 15,521,992 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	16,092,346 - 16,103,272 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	16,143,022 - 16,153,974 (-)	NCBI		UU_Cfam_GSD_1.0

Crygn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	6,094,449 - 6,101,242 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936527	6,803,428 - 6,807,078 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936527	6,804,193 - 6,808,558 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CRYGN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	5,839,825 - 5,849,914 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	18	5,840,024 - 5,848,163 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	6,308,921 - 6,318,870 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CRYGN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	119,609,764 - 119,621,449 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	119,612,087 - 119,618,488 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666072	15,579,861 - 15,591,128 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Crygn
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624800	5,273,128 - 5,278,955 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624800	5,273,128 - 5,278,955 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013504567	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01060503	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDI01374472	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_013504567 ⟹ XP_013360021

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955491	5,780,537 - 5,788,655 (-)	NCBI

Sequence:

show sequence

ATGCTCGAGGCTCGTCATGCCTGGGATGGGGCCCTGCTGCAGCGGACACAGGGAGAGTCGCTGT
GGTCGCCCCGGCCACCGAATTCCTTGTTCTACCTGCGCGCGGCTGGCCGCTTCCACCGCCAGGG
ATGCAGTCCCCACTGTCACAGCCTTGAGACGCGGGCCGCGTGCGGTGAGGATGGATCGGTTCCC
CCAGAGCCGGCAGTGCCGGGCCCTACTGAGCACAGCGGGCTGGCTGTGGTGGCCTCTCTGCCCT
GGCCCTCCCAGATCACCTTCTATGAGGGCCAACACTTCACGGGGCGGAAGCTGGAGGTCTTCGG
GGACTGCGACAACTTCCAGGACCGAGGCTTTATGAACCGGGTCAACTCCATCCGCGTGGAGAGC
GGGGCGTGGGTCTGCTTCGATCACCCTGACTTCCGGGGCCAGCAGTTCATTCTGGAGCACGGCG
ACTACCCCGACTTCTTCCGCTGGAACGGCCACAATGACCACATGGGCTCCTGTCGGCCTGTGGG
GATGCACGGAGAGCACTTCCGCATAGAAATCTTCGAGGGCTGCAACTTCACAGGCCAGAGCCTG
GAGCTGGTGGAGGACTGCCCCTTCCTGCAGAGCCGCGGCTGGCCCAAGAGCTGCGTCAACGCCG
CCAAGGTGTACGGGGATGGAGCGTGGGTGCTGTACGAGGAGCCCAACTACCGCGGCCGCATGTT
CCTGCTGGAGCGCGGCGACTTCCGCGGCTTCTCCGACTGGGAGGCGCACAGCGGCCGCGTGCAG
TCGCTGCGCAGGGTCGTCAACTTCTTCTAGCCGCGGGCGGCGAGCGCGGGAATAAAGTGCTGGA
GCGGC

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Protein Sequences


Protein RefSeqs	XP_013360021	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_013360021 ⟸ XM_013504567

- Sequence:

show sequence

MLEARHAWDGALLQRTQGESLWSPRPPNSLFYLRAAGRFHRQGCSPHCHSLETRAACGEDGSVP
PEPAVPGPTEHSGLAVVASLPWPSQITFYEGQHFTGRKLEVFGDCDNFQDRGFMNRVNSIRVES
GAWVCFDHPDFRGQQFILEHGDYPDFFRWNGHNDHMGSCRPVGMHGEHFRIEIFEGCNFTGQSL
ELVEDCPFLQSRGWPKSCVNAAKVYGDGAWVLYEEPNYRGRMFLLERGDFRGFSDWEAHSGRVQ
SLRRVVNFF

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Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	Crygn	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-16	Crygn	crystallin gamma N		crystallin, gamma N	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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