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Gene: LOC100524947 (olfactory receptor 8D4) Sus scrofa

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Symbol:

LOC100524947 (Ensembl: OR8D4)

Name:

olfactory receptor 8D4 (Ensembl:olfactory receptor family 8 subfamily D member 4)

RGD ID:

13861836

Description:

ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); ASSOCIATED WITH chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); holoprosencephaly 11 (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	50,713,124 - 50,714,062 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	50,713,124 - 50,714,241 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	56,002,518 - 56,003,456 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chromosome 11 partial duplication syndrome (ISO)

Dwarfism (ISO)

holoprosencephaly 11 (ISO)

schizophrenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

detection of chemical stimulus involved in sensory perception of smell (IEA)

G protein-coupled receptor signaling pathway (IBA,IEA)

sensory perception of smell (IBA,IEA)

Cellular Component

membrane (IEA)

plasma membrane (IEA)

Molecular Function

G protein-coupled receptor activity (IEA)

odorant binding (IBA)

olfactory receptor activity (IBA,IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

LOC100524947
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	50,713,124 - 50,714,062 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	50,713,124 - 50,714,241 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	56,002,518 - 56,003,456 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

OR8D4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	123,902,167 - 123,909,229 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	123,902,167 - 123,909,229 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	123,772,874 - 123,779,936 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	123,282,349 - 123,283,293 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	123,282,348 - 123,283,293	NCBI
Celera	11	120,936,319 - 120,937,263 (+)	NCBI		Celera
Cytogenetic Map	11	q24.1	NCBI
HuRef	11	119,717,893 - 119,718,837 (+)	NCBI		HuRef
CHM1_1	11	123,663,308 - 123,664,252 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	123,930,777 - 123,937,833 (+)	NCBI		T2T-CHM13v2.0

Or8d4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	40,038,220 - 40,039,335 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	40,037,604 - 40,041,480 (-)	Ensembl		GRCm39 Ensembl
GRCm38	9	40,126,924 - 40,128,039 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	40,126,308 - 40,130,184 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	39,934,509 - 39,935,624 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	39,877,595 - 39,878,530 (-)	NCBI		MGSCv36	mm8
Celera	9	37,365,610 - 37,366,725 (-)	NCBI		Celera
Cytogenetic Map	9	A5.1	NCBI
cM Map	9	21.42	NCBI

Or8d4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	49,367,154 - 49,368,089 (-)	NCBI		GRCr8
mRatBN7.2	8	40,469,997 - 40,470,932 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	40,469,997 - 40,470,932 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	8	43,969,459 - 43,970,400 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	43,969,459 - 43,970,394 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	61,561,742 - 61,562,677 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	43,069,683 - 43,078,215 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	43,078,448 - 43,086,981 (-)	NCBI
Celera	8	40,085,203 - 40,086,144 (-)	NCBI		Celera
Cytogenetic Map	8	q22	NCBI

LOC102028842
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	24,557,873 - 24,558,808 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955412	24,557,873 - 24,558,811 (+)	NCBI	ChiLan1.0	ChiLan1.0

LOC100972169
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	124,599,166 - 124,606,567 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	125,703,625 - 125,711,027 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	118,734,966 - 118,736,039 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	122,651,849 - 122,652,922 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	122,651,884 - 122,652,828 (+)	Ensembl	panpan1.1		panPan2

OR8D4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	10,572,932 - 10,588,563 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	10,587,439 - 10,588,374 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	10,643,580 - 10,644,515 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	10,526,888 - 10,537,965 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	10,536,941 - 10,537,876 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	10,642,548 - 10,643,484 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	10,572,619 - 10,573,554 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	10,617,933 - 10,618,868 (+)	NCBI		UU_Cfam_GSD_1.0

LOC101955299
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	105,383,048 - 105,384,062 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936542	8,304,492 - 8,305,427 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936542	8,304,457 - 8,305,471 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LOC103248710
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	115,167,659 - 115,221,248 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	115,220,148 - 115,221,089 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666043	10,894,508 - 10,896,137 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

LOC101697622
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624880	1,280,736 - 1,281,671 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624880	1,280,733 - 1,281,695 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in LOC100524947
56 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003129964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000070	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU855492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000016516 ⟹ ENSSSCP00000016073

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	9	50,713,124 - 50,714,062 (-)	Ensembl

RefSeq Acc Id:

XM_003129964 ⟹ XP_003130012

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	9	50,713,124 - 50,714,241 (-)	NCBI

Sequence:

show sequence

TAAAGTCTCTGCACATGGATGGAAGTGCAGGCTTAGTGCCAATAGGTAAGATAACCTGGGTTCA
GTGTTTCCATGAGTAGAATATCTGGGCTCTGGGGAACCGAAGACAAGGAGTGATTCTGCCTGTC
TAATTGGACTCTAATTGGACTCATTCATCTTCACAGATTTCTCGGAGAATAATGGATATAAGAA
ATCAATCTGAAGTGACCAATTTTCTCCTTTCAGGATTAACTGACCAACCAGGGCTTCAGCTGCC
TCTCTTCTGCCTCTTCCTGGGGATTTATATGGTCACTGTAGTTGGAAACCTCGGTATGATCTCC
ATAATTGCGTTGAGTTCTCAACTTCACACCCCCATGTACTATTTCCTCAGTAGTTTATCATTTT
TAGATTTCTGCTATTCTTCCGTCATTACCCCCAAAATGCTGGCAGGATTTTTAGCAAGGGATAG
AACAATCTCCTATTCTGGATGCATGACTCAGCTGTTTTTTTTCTGTATTTTTGTCATTTCTGAG
TGCTACATGCTGGCAGCGATGGCCTATGACCGCTATGTGGCCATCTGCATCCCCCTGCTCTACA
ATGTCATCATGTCCCCCAGGGTCTGTTCTCTGCTGGTGGCTGCTGTCTTCTCAGTAGGCATCAC
TGATGCTCTGATTCATGGAGGTTGCATATTAAGGTTGACTTTCTGTGGCTCAAACATCATTGCA
CATTATTTCTGTGACATCATTCCTCTTATTAAACTCTCATGTTCCAGCACTTACATTGATGAGC
TTTTGGTTTTTGCCATTGGAGGGTTTAACATGGTAGCTACCAGCTTAACAATCATCATTTCATA
TGCTTTTATCCTTTCCAGCATCCTCTGCATCCACTCAAAAGCTGGCCGGTCCAAAGCCTTCAGC
ACCTGTAGCTCCCATTTGACAGCTGTTCTTATATTTTATGGGTCTCTCATGTCCATGTATCTCA
AACCTGCTTCTAGCAGTTCACTCACCCAAGAGAAAGTGTCCTCAGTATTTTACACCAACGTGAT
TCCCATGTTGAATCCCCTGATATATAGTTTGAGGAACAAGGAAGTAAAAAATGCATTGATGAAA
CTCTTAAGAAGAAAAATATCTTCAAAATGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003130012	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000016073
	ENSSSCP00000016073.2
	ENSSSCP00015043736.1
	ENSSSCP00025004405.1
	ENSSSCP00035025228.1
	ENSSSCP00045011321.1
	ENSSSCP00055013710.1
	ENSSSCP00060000142.1
	ENSSSCP00060033680.1
	ENSSSCP00065014214.1
	ENSSSCP00070041321.1

RefSeq Acc Id:

XP_003130012 ⟸ XM_003129964

- UniProtKB:

F1S9N5 (UniProtKB/TrEMBL), A0A4X1VHK3 (UniProtKB/TrEMBL), A0A8D0QBL4 (UniProtKB/TrEMBL), A0A8D1Y4E4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDIRNQSEVTNFLLSGLTDQPGLQLPLFCLFLGIYMVTVVGNLGMISIIALSSQLHTPMYYFLS
SLSFLDFCYSSVITPKMLAGFLARDRTISYSGCMTQLFFFCIFVISECYMLAAMAYDRYVAICI
PLLYNVIMSPRVCSLLVAAVFSVGITDALIHGGCILRLTFCGSNIIAHYFCDIIPLIKLSCSST
YIDELLVFAIGGFNMVATSLTIIISYAFILSSILCIHSKAGRSKAFSTCSSHLTAVLIFYGSLM
SMYLKPASSSSLTQEKVSSVFYTNVIPMLNPLIYSLRNKEVKNALMKLLRRKISSK

hide sequence

Ensembl Acc Id:

ENSSSCP00000016073 ⟸ ENSSSCT00000016516

Protein Domains

G-protein coupled receptors family 1 profile

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000015150	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015077410	UniProtKB/TrEMBL
	ENSSSCG00025008228	UniProtKB/TrEMBL
	ENSSSCG00035046936	UniProtKB/TrEMBL
	ENSSSCG00045009680	UniProtKB/TrEMBL
	ENSSSCG00055008883	UniProtKB/TrEMBL
	ENSSSCG00060000613	UniProtKB/TrEMBL
	ENSSSCG00060057199	UniProtKB/TrEMBL
	ENSSSCG00065025648	UniProtKB/TrEMBL
	ENSSSCG00070024522	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000016516	ENTREZGENE
	ENSSSCT00000016516.4	UniProtKB/TrEMBL
	ENSSSCT00015104569.1	UniProtKB/TrEMBL
	ENSSSCT00025010950.1	UniProtKB/TrEMBL
	ENSSSCT00035062442.1	UniProtKB/TrEMBL
	ENSSSCT00045016386.1	UniProtKB/TrEMBL
	ENSSSCT00055017343.1	UniProtKB/TrEMBL
	ENSSSCT00060000687.1	UniProtKB/TrEMBL
	ENSSSCT00060077939.1	UniProtKB/TrEMBL
	ENSSSCT00065034312.1	UniProtKB/TrEMBL
	ENSSSCT00070048932.1	UniProtKB/TrEMBL
Gene3D-CATH	Rhodopsin 7-helix transmembrane proteins	UniProtKB/TrEMBL
InterPro	GPCR_Rhodpsn	UniProtKB/TrEMBL
	GPCR_Rhodpsn_7TM	UniProtKB/TrEMBL
	Olfact_rcpt	UniProtKB/TrEMBL
KEGG Report	ssc:100524947	UniProtKB/TrEMBL
NCBI Gene	LOC100524947	ENTREZGENE
PANTHER	OLFACTORY RECEPTOR	UniProtKB/TrEMBL
	OLFACTORY RECEPTOR 8D4	UniProtKB/TrEMBL
Pfam	7tm_4	UniProtKB/TrEMBL
PRINTS	GPCRRHODOPSN	UniProtKB/TrEMBL
	OLFACTORYR	UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F1_1	UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F1_2	UniProtKB/TrEMBL
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/TrEMBL
UniProt	A0A4X1VHK3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0QBL4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1Y4E4	ENTREZGENE, UniProtKB/TrEMBL
	F1S9N5	ENTREZGENE
UniProt Secondary	F1S9N5	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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