SNX19 (sorting nexin 19) - Rat Genome Database

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Gene: SNX19 (sorting nexin 19) Sus scrofa
Analyze
Symbol: SNX19
Name: sorting nexin 19
RGD ID: 13848298
Description: ENCODES a protein that exhibits phosphatidylinositol binding (inferred); phosphatidylinositol-3-phosphate binding (inferred); INVOLVED IN chondrocyte differentiation (ortholog); dense core granule maturation (ortholog); establishment of localization in cell (ortholog); ASSOCIATED WITH chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); Jacobsen Syndrome (ortholog); FOUND IN cytoplasm (inferred); early endosome membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sorting nexin-19
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl957,510,486 - 57,558,339 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1957,509,186 - 57,558,361 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2963,780,727 - 63,829,824 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SNX19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl957,510,486 - 57,558,339 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1957,509,186 - 57,558,361 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2963,780,727 - 63,829,824 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SNX19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811130,866,250 - 130,916,479 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11130,866,250 - 130,916,479 (-)EnsemblGRCh38hg38GRCh38
GRCh3711130,736,145 - 130,786,374 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611130,250,976 - 130,291,592 (-)NCBINCBI36Build 36hg18NCBI36
Celera11127,914,643 - 127,955,264 (-)NCBICelera
Cytogenetic Map11q24.3-q25NCBI
HuRef11126,700,502 - 126,741,119 (-)NCBIHuRef
CHM1_111130,631,931 - 130,672,553 (-)NCBICHM1_1
T2T-CHM13v2.011130,901,996 - 130,952,245 (-)NCBIT2T-CHM13v2.0
Snx19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39930,338,284 - 30,378,437 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl930,338,404 - 30,378,029 (+)EnsemblGRCm39 Ensembl
GRCm38930,426,988 - 30,467,141 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl930,427,108 - 30,466,733 (+)EnsemblGRCm38mm10GRCm38
MGSCv37930,234,914 - 30,274,311 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36930,176,896 - 30,216,287 (+)NCBIMGSCv36mm8
Celera927,687,735 - 27,727,331 (+)NCBICelera
Cytogenetic Map9A4NCBI
cM Map916.04NCBI
Snx19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8837,088,142 - 37,125,317 (+)NCBIGRCr8
mRatBN7.2828,829,881 - 28,867,600 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl828,829,886 - 28,867,061 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx832,896,451 - 32,933,015 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0831,190,858 - 31,227,422 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0829,068,313 - 29,105,324 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0831,497,034 - 31,534,077 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl831,497,639 - 31,534,077 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0831,526,141 - 31,563,756 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4830,149,376 - 30,186,285 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1830,158,000 - 30,192,395 (+)NCBI
Celera830,300,004 - 30,336,519 (+)NCBICelera
Cytogenetic Map8q13NCBI
Snx19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541231,747,760 - 31,791,044 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541231,747,519 - 31,791,022 (-)NCBIChiLan1.0ChiLan1.0
SNX19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29131,548,955 - 131,599,228 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111132,669,158 - 132,709,818 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011125,691,537 - 125,732,206 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111129,581,876 - 129,622,517 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11129,581,876 - 129,622,517 (-)Ensemblpanpan1.1panPan2
SNX19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.154,044,597 - 4,085,438 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl54,045,097 - 4,084,363 (+)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.054,005,551 - 4,046,279 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.154,041,102 - 4,081,805 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.054,048,129 - 4,089,041 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.054,075,351 - 4,116,069 (+)NCBIUU_Cfam_GSD_1.0
Snx19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947112,871,560 - 112,921,032 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365721,529,262 - 1,571,144 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365721,529,329 - 1,567,991 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNX19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11121,927,660 - 121,968,101 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1121,930,165 - 121,968,075 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660434,134,817 - 4,175,289 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snx19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248125,329,460 - 5,381,593 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248125,328,091 - 5,381,537 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SNX19
1024 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003130084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013979582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013979583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013979584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013979586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021063163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002335748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002335749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002335750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002335751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002335752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002335753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002335754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002335755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_305478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU915801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01082355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSSCT00000016621   ⟹   ENSSSCP00000016175
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl957,509,797 - 57,558,301 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000037716   ⟹   ENSSSCP00000058120
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl957,510,486 - 57,558,301 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000045004   ⟹   ENSSSCP00000038555
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl957,547,723 - 57,558,339 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000061320   ⟹   ENSSSCP00000056812
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl957,510,487 - 57,558,323 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000071336   ⟹   ENSSSCP00000070526
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl957,509,191 - 57,538,885 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000085678   ⟹   ENSSSCP00000069409
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl957,510,487 - 57,550,709 (-)Ensembl
RefSeq Acc Id: XM_003130084   ⟹   XP_003130132
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1957,510,268 - 57,558,361 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013979582   ⟹   XP_013835036
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1957,545,544 - 57,558,308 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013979583   ⟹   XP_013835037
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1957,510,268 - 57,553,938 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013979584   ⟹   XP_013835038
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1957,510,268 - 57,554,081 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013979586   ⟹   XP_013835040
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1957,510,268 - 57,558,348 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021063163   ⟹   XP_020918822
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1957,519,008 - 57,558,308 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002335748
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1957,510,268 - 57,558,342 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002335749
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1957,510,268 - 57,558,308 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002335750
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1957,510,268 - 57,558,308 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002335751
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1957,510,268 - 57,558,308 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002335752
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1957,510,268 - 57,558,308 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002335753
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1957,521,440 - 57,558,308 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002335754
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1957,521,454 - 57,558,308 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002335755
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1957,534,847 - 57,558,308 (-)NCBI
Sequence:
RefSeq Acc Id: XR_305478
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1957,509,186 - 57,558,342 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003130132   ⟸   XM_003130084
- Peptide Label: isoform X1
- UniProtKB: A0A287BNC7 (UniProtKB/TrEMBL),   A0A4X1VAT3 (UniProtKB/TrEMBL),   A0A480TYX8 (UniProtKB/TrEMBL),   A0A8D1N473 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013835040   ⟸   XM_013979586
- Peptide Label: isoform X4
- UniProtKB: A0A4X1VAN1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013835038   ⟸   XM_013979584
- Peptide Label: isoform X4
- UniProtKB: A0A4X1VAN1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013835037   ⟸   XM_013979583
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020918822   ⟸   XM_021063163
- Peptide Label: isoform X5
- UniProtKB: A0A4X1VAY0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013835036   ⟸   XM_013979582
- Peptide Label: isoform X2
- UniProtKB: A0A287A3U1 (UniProtKB/TrEMBL),   A0A4X1V7B7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000016175   ⟸   ENSSSCT00000016621
Ensembl Acc Id: ENSSSCP00000056812   ⟸   ENSSSCT00000061320
Ensembl Acc Id: ENSSSCP00000038555   ⟸   ENSSSCT00000045004
Ensembl Acc Id: ENSSSCP00000069409   ⟸   ENSSSCT00000085678
Ensembl Acc Id: ENSSSCP00000070526   ⟸   ENSSSCT00000071336
Ensembl Acc Id: ENSSSCP00000058120   ⟸   ENSSSCT00000037716
Protein Domains
PX   PXA   Sorting nexin C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000015252 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015031746 UniProtKB/TrEMBL
  ENSSSCG00025026452 UniProtKB/TrEMBL
  ENSSSCG00030050163 UniProtKB/TrEMBL
  ENSSSCG00035073625 UniProtKB/TrEMBL
  ENSSSCG00040015153 UniProtKB/TrEMBL
  ENSSSCG00045026232 UniProtKB/TrEMBL
  ENSSSCG00050054576 UniProtKB/TrEMBL
  ENSSSCG00055014573 UniProtKB/TrEMBL
  ENSSSCG00060072149 UniProtKB/TrEMBL
  ENSSSCG00065034088 UniProtKB/TrEMBL
  ENSSSCG00070023056 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000037716 ENTREZGENE
  ENSSSCT00000037716.3 UniProtKB/TrEMBL
  ENSSSCT00000045004 ENTREZGENE
  ENSSSCT00000045004.3 UniProtKB/TrEMBL
  ENSSSCT00000085678.2 UniProtKB/TrEMBL
  ENSSSCT00015043473.1 UniProtKB/TrEMBL
  ENSSSCT00025035757.1 UniProtKB/TrEMBL
  ENSSSCT00025036224.1 UniProtKB/TrEMBL
  ENSSSCT00030069899.1 UniProtKB/TrEMBL
  ENSSSCT00030070018.1 UniProtKB/TrEMBL
  ENSSSCT00035099758.1 UniProtKB/TrEMBL
  ENSSSCT00035099862.1 UniProtKB/TrEMBL
  ENSSSCT00035099924.1 UniProtKB/TrEMBL
  ENSSSCT00040020458.1 UniProtKB/TrEMBL
  ENSSSCT00040020683.1 UniProtKB/TrEMBL
  ENSSSCT00045044634.1 UniProtKB/TrEMBL
  ENSSSCT00045045026.1 UniProtKB/TrEMBL
  ENSSSCT00045045218.1 UniProtKB/TrEMBL
  ENSSSCT00050074421.1 UniProtKB/TrEMBL
  ENSSSCT00050074447.1 UniProtKB/TrEMBL
  ENSSSCT00055028945.1 UniProtKB/TrEMBL
  ENSSSCT00055029439.1 UniProtKB/TrEMBL
  ENSSSCT00060098577.1 UniProtKB/TrEMBL
  ENSSSCT00060098719.1 UniProtKB/TrEMBL
  ENSSSCT00065046385.1 UniProtKB/TrEMBL
  ENSSSCT00065046422.1 UniProtKB/TrEMBL
  ENSSSCT00070045914.1 UniProtKB/TrEMBL
  ENSSSCT00070045921.1 UniProtKB/TrEMBL
  ENSSSCT00070045923.1 UniProtKB/TrEMBL
  ENSSSCT00070045927.1 UniProtKB/TrEMBL
  ENSSSCT00070045937.1 UniProtKB/TrEMBL
  ENSSSCT00070045946.1 UniProtKB/TrEMBL
  ENSSSCT00070045950.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1520.10 UniProtKB/TrEMBL
InterPro Phox UniProtKB/TrEMBL
  Phox_assoc UniProtKB/TrEMBL
  PX_dom_sf UniProtKB/TrEMBL
  SNX19_PX UniProtKB/TrEMBL
  Sorting_nexin_C UniProtKB/TrEMBL
KEGG Report ssc:100519207 UniProtKB/TrEMBL
NCBI Gene SNX19 ENTREZGENE
PANTHER PTHR22775:SF31 UniProtKB/TrEMBL
  SORTING NEXIN UniProtKB/TrEMBL
Pfam Nexin_C UniProtKB/TrEMBL
  PF00787 UniProtKB/TrEMBL
  PXA UniProtKB/TrEMBL
PROSITE PS50195 UniProtKB/TrEMBL
  PXA UniProtKB/TrEMBL
SMART PXA UniProtKB/TrEMBL
  SM00312 UniProtKB/TrEMBL
Superfamily-SCOP SSF64268 UniProtKB/TrEMBL
UniProt A0A287A3U1 ENTREZGENE, UniProtKB/TrEMBL
  A0A287BJW4_PIG UniProtKB/TrEMBL
  A0A287BNC7 ENTREZGENE, UniProtKB/TrEMBL
  A0A480TYX8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1V797_PIG UniProtKB/TrEMBL
  A0A4X1V7B7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VAN1 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VAR6_PIG UniProtKB/TrEMBL
  A0A4X1VAT3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VAY0 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VD67_PIG UniProtKB/TrEMBL
  A0A8D1N473 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A5G2QWT5 UniProtKB/TrEMBL
VGNC ID VGNC:93311 ENTREZGENE