ULK4 (unc-51 like kinase 4) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: ULK4 (unc-51 like kinase 4) Sus scrofa
Analyze
Symbol: ULK4
Name: unc-51 like kinase 4
RGD ID: 13843388
Description: ENCODES a protein that exhibits ATP binding (inferred); kinase activity (inferred); protein kinase activity (inferred); INVOLVED IN adult behavior (ortholog); adult walking behavior (ortholog); axoneme assembly (ortholog); ASSOCIATED WITH congenital muscular dystrophy-dystroglycanopathy type A8 (ortholog); hydrocephalus (ortholog); intellectual disability (ortholog); FOUND IN cilium (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serine/threonine-protein kinase ULK4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1325,209,368 - 25,751,500 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11325,207,890 - 25,751,465 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21328,071,886 - 28,220,715 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cilium  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:22301074  


Genomics

Comparative Map Data
ULK4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1325,209,368 - 25,751,500 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11325,207,890 - 25,751,465 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21328,071,886 - 28,220,715 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ULK4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38341,246,599 - 41,962,103 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl341,246,599 - 41,962,130 (-)EnsemblGRCh38hg38GRCh38
GRCh37341,288,090 - 42,003,595 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36341,263,094 - 41,978,664 (-)NCBINCBI36Build 36hg18NCBI36
Build 34341,978,515 - 41,978,574NCBI
Celera341,226,416 - 41,942,816 (-)NCBICelera
Cytogenetic Map3p22.1NCBI
HuRef341,333,321 - 42,047,163 (-)NCBIHuRef
CHM1_1341,238,652 - 41,954,787 (-)NCBICHM1_1
T2T-CHM13v2.0341,255,217 - 41,980,057 (-)NCBIT2T-CHM13v2.0
Ulk4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399120,793,520 - 121,115,225 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9120,784,417 - 121,106,263 (-)EnsemblGRCm39 Ensembl
GRCm389120,964,454 - 121,286,159 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9120,955,351 - 121,277,197 (-)EnsemblGRCm38mm10GRCm38
MGSCv379120,873,572 - 121,186,290 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369120,982,789 - 121,186,592 (-)NCBIMGSCv36mm8
Celera9121,435,446 - 121,746,505 (-)NCBICelera
Cytogenetic Map9F4NCBI
cM Map972.19NCBI
Ulk4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88129,548,431 - 129,843,555 (-)NCBIGRCr8
mRatBN7.28120,670,879 - 120,966,026 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8120,670,866 - 120,966,924 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.08129,631,003 - 129,919,080 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8129,632,149 - 129,919,120 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08128,829,597 - 129,125,286 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48125,992,455 - 126,284,263 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8119,808,966 - 120,095,020 (-)NCBICelera
Cytogenetic Map8q32NCBI
Ulk4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542028,633,726 - 29,028,025 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542028,633,011 - 29,031,161 (+)NCBIChiLan1.0ChiLan1.0
ULK4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2241,201,181 - 41,922,285 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1341,205,941 - 41,927,169 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0341,152,261 - 41,864,865 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1341,420,162 - 42,129,218 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl341,568,907 - 42,121,959 (-)Ensemblpanpan1.1panPan2
ULK4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12310,578,391 - 11,176,543 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2310,578,429 - 11,176,545 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2310,614,934 - 11,212,666 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02310,865,767 - 11,464,428 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2310,865,770 - 11,464,449 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12310,675,524 - 11,266,508 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02310,817,061 - 11,408,866 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02310,809,035 - 11,412,354 (-)NCBIUU_Cfam_GSD_1.0
Ulk4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118196,896,010 - 197,397,921 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647330,038,164 - 30,536,567 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647330,034,159 - 30,536,450 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ULK4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1222,731,174 - 3,398,885 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl222,731,308 - 3,398,912 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041163,794,109 - 164,464,458 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ulk4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473077,495,747 - 77,875,622 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473077,495,705 - 77,876,547 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ULK4
23299 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000029444   ⟹   ENSSSCP00000020965
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1325,214,080 - 25,751,328 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000042446   ⟹   ENSSSCP00000033601
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1325,209,368 - 25,751,321 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000055146   ⟹   ENSSSCP00000047745
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1325,209,368 - 25,751,343 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000058983   ⟹   ENSSSCP00000033841
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1325,388,206 - 25,751,361 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000064110   ⟹   ENSSSCP00000051595
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1325,210,498 - 25,751,342 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000080457   ⟹   ENSSSCP00000064065
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1325,208,065 - 25,751,500 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000093172   ⟹   ENSSSCP00000078671
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1325,733,076 - 25,751,500 (-)Ensembl
RefSeq Acc Id: XM_021070409   ⟹   XP_020926068
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11325,207,890 - 25,751,465 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021070410   ⟹   XP_020926069
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11325,207,890 - 25,751,465 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021070411   ⟹   XP_020926070
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11325,207,890 - 25,751,465 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021070412   ⟹   XP_020926071
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11325,507,707 - 25,751,464 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021070414   ⟹   XP_020926073
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11325,398,835 - 25,751,464 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002337916
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11325,207,890 - 25,751,465 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002337917
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11325,207,890 - 25,751,465 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002337918
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11325,337,484 - 25,751,465 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002337919
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11325,337,484 - 25,751,465 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020926069   ⟸   XM_021070410
- Peptide Label: isoform X2
- UniProtKB: A0A4X1TL23 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020926070   ⟸   XM_021070411
- Peptide Label: isoform X3
- UniProtKB: A0A4X1TNM5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020926068   ⟸   XM_021070409
- Peptide Label: isoform X1
- UniProtKB: A0A4X1TL23 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020926073   ⟸   XM_021070414
- Peptide Label: isoform X5
- UniProtKB: A0A480F401 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020926071   ⟸   XM_021070412
- Peptide Label: isoform X4
- UniProtKB: A0A480F401 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000020965   ⟸   ENSSSCT00000029444
Ensembl Acc Id: ENSSSCP00000051595   ⟸   ENSSSCT00000064110
Ensembl Acc Id: ENSSSCP00000033841   ⟸   ENSSSCT00000058983
Ensembl Acc Id: ENSSSCP00000047745   ⟸   ENSSSCT00000055146
Ensembl Acc Id: ENSSSCP00000064065   ⟸   ENSSSCT00000080457
Ensembl Acc Id: ENSSSCP00000033601   ⟸   ENSSSCT00000042446
Ensembl Acc Id: ENSSSCP00000078671   ⟸   ENSSSCT00000093172
Protein Domains
Protein kinase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000025408 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070010286 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000029444.3 UniProtKB/TrEMBL
  ENSSSCT00000042446 ENTREZGENE
  ENSSSCT00000042446.3 UniProtKB/TrEMBL
  ENSSSCT00000055146 ENTREZGENE
  ENSSSCT00000055146.3 UniProtKB/TrEMBL
  ENSSSCT00000064110 ENTREZGENE
  ENSSSCT00000064110.3 UniProtKB/TrEMBL
  ENSSSCT00000093172.1 UniProtKB/TrEMBL
  ENSSSCT00070020171.1 UniProtKB/TrEMBL
  ENSSSCT00070020214.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  ULK4 UniProtKB/TrEMBL
NCBI Gene ULK4 ENTREZGENE
PANTHER PTHR46240 UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN KINASE ULK4 UniProtKB/TrEMBL
Pfam Pkinase UniProtKB/TrEMBL
PROSITE PROTEIN_KINASE_DOM UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
  SSF56112 UniProtKB/TrEMBL
UniProt A0A286ZPS2_PIG UniProtKB/TrEMBL
  A0A287AUF6_PIG UniProtKB/TrEMBL
  A0A287B5M6_PIG UniProtKB/TrEMBL
  A0A480F401 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TJ79_PIG UniProtKB/TrEMBL
  A0A4X1TL23 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TNM5 ENTREZGENE, UniProtKB/TrEMBL
  I3LA98_PIG UniProtKB/TrEMBL
UniProt Secondary A0A8W4FGV9 UniProtKB/TrEMBL
VGNC ID VGNC:94697 ENTREZGENE