CRB3 (crumbs cell polarity complex component 3) - Rat Genome Database

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Gene: CRB3 (crumbs cell polarity complex component 3) Sus scrofa
Analyze
Symbol: CRB3
Name: crumbs cell polarity complex component 3
RGD ID: 13843201
Description: ENCODES a protein that exhibits protein domain specific binding (inferred); SH3 domain binding (inferred); INVOLVED IN positive regulation of cell junction assembly (inferred); protein localization to plasma membrane (inferred); ASSOCIATED WITH mucolipidosis type IV (ortholog); FOUND IN protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: crumbs 3, cell polarity complex component; protein crumbs homolog 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl272,618,105 - 72,623,344 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1272,618,059 - 72,623,266 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2273,046,032 - 73,049,051 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463  


Genomics

Comparative Map Data
CRB3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl272,618,105 - 72,623,344 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1272,618,059 - 72,623,266 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2273,046,032 - 73,049,051 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CRB3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38196,463,777 - 6,467,221 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl196,463,777 - 6,467,221 (+)EnsemblGRCh38hg38GRCh38
GRCh37196,463,788 - 6,467,232 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36196,415,260 - 6,418,232 (+)NCBINCBI36Build 36hg18NCBI36
Build 34196,414,787 - 6,418,228NCBI
Celera196,404,086 - 6,407,058 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef196,227,050 - 6,230,022 (+)NCBIHuRef
CHM1_1196,463,843 - 6,466,815 (+)NCBICHM1_1
T2T-CHM13v2.0196,450,245 - 6,456,708 (+)NCBIT2T-CHM13v2.0
Crb3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391757,368,583 - 57,372,920 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1757,366,105 - 57,372,918 (+)EnsemblGRCm39 Ensembl
GRCm381757,062,201 - 57,065,918 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1757,059,105 - 57,065,918 (+)EnsemblGRCm38mm10GRCm38
MGSCv371757,201,700 - 57,205,341 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361756,747,424 - 56,751,065 (+)NCBIMGSCv36mm8
Celera1761,410,197 - 61,413,838 (+)NCBICelera
Cytogenetic Map17DNCBI
cM Map1729.65NCBI
Crb3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr891,985,504 - 1,990,855 (+)NCBIGRCr8
mRatBN7.291,898,531 - 1,903,860 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl91,896,623 - 1,903,859 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx92,334,695 - 2,337,797 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.097,684,052 - 7,687,154 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.096,639,913 - 6,643,015 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.099,982,529 - 9,986,896 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl99,980,720 - 9,985,630 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.098,981,382 - 8,990,122 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera96,613,602 - 6,616,703 (-)NCBICelera
Cytogenetic Map9q11NCBI
Crb3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554953,148,729 - 3,152,269 (-)NCBIChiLan1.0ChiLan1.0
CRB3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22010,866,380 - 10,875,309 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11910,092,301 - 10,101,234 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0195,485,925 - 5,494,853 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1196,414,371 - 6,417,492 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl196,414,370 - 6,417,485 (+)Ensemblpanpan1.1panPan2
CRB3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12053,717,844 - 53,722,127 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2053,718,103 - 53,720,381 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2053,462,717 - 53,469,203 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02054,369,642 - 54,376,128 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2054,372,056 - 54,374,326 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12053,436,493 - 53,442,980 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02053,884,931 - 53,891,420 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02054,113,911 - 54,120,402 (-)NCBIUU_Cfam_GSD_1.0
Crb3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118214,020,381 - 214,029,991 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365883,808,839 - 3,814,801 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365883,806,193 - 3,811,718 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRB3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.166,062,459 - 6,070,989 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl66,068,459 - 6,070,771 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660811,927,022 - 1,930,354 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Crb3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248283,571,833 - 3,578,281 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CRB3
26 total Variants

Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSSCT00000094365   ⟹   ENSSSCP00000076477
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl272,618,105 - 72,623,344 (-)Ensembl
RefSeq Acc Id: XM_003123115   ⟹   XP_003123163
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1272,618,059 - 72,623,266 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003123163 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000076477
  ENSSSCP00000076477.1
  ENSSSCP00070044142.1
  ENSSSCP00070044143.1
RefSeq Acc Id: XP_003123163   ⟸   XM_003123115
- UniProtKB: A0A4X1VSM4 (UniProtKB/TrEMBL),   A0A8W4FB33 (UniProtKB/TrEMBL),   A0A4X1VQQ4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000076477   ⟸   ENSSSCT00000094365


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000051897 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070026057 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000094365 ENTREZGENE
  ENSSSCT00000094365.1 UniProtKB/TrEMBL
  ENSSSCT00070052168.1 UniProtKB/TrEMBL
  ENSSSCT00070052169.1 UniProtKB/TrEMBL
KEGG Report ssc:100517699 UniProtKB/TrEMBL
NCBI Gene CRB3 ENTREZGENE
UniProt A0A4X1VQQ4 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VSM4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FB33 ENTREZGENE, UniProtKB/TrEMBL