HCG9P5 (HLA complex group 9 pseudogene 5) - Rat Genome Database

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Gene: HCG9P5 (HLA complex group 9 pseudogene 5) Homo sapiens
Analyze
Symbol: HCG9P5
Name: HLA complex group 9 pseudogene 5
RGD ID: 1352356
HGNC Page HGNC:30983
Description:
Type: pseudo
RefSeq Status: INFERRED
Previously known as: dJ377H14.6; HCGIX-5
Related Functional Gene: HCG9  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38629,748,254 - 29,748,648 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37629,716,031 - 29,716,425 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36629,823,907 - 29,824,503 (-)NCBINCBI36Build 36hg18NCBI36
Celera631,319,464 - 31,319,858 (+)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef629,519,673 - 29,520,067 (+)NCBIHuRef
CHM1_1629,718,156 - 29,718,550 (+)NCBICHM1_1
T2T-CHM13v2.0629,620,340 - 29,620,734 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10557312  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:341
Count of miRNA genes:314
Interacting mature miRNAs:339
Transcripts:ENST00000435408
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D6S2707  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6p22.1UniSTS
Cytogenetic Map6p21.3UniSTS


Expression


Sequence



Additional Information

Database Acc Id Source(s)
COSMIC HCG9P5 COSMIC
GTEx HCG9P5 GTEx
HGNC ID HGNC:30983 ENTREZGENE
Human Proteome Map HCG9P5 Human Proteome Map
NCBI Gene 353019 ENTREZGENE
PharmGKB PA134950035 PharmGKB