RPSAP3 (ribosomal protein SA pseudogene 3) - Rat Genome Database

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Gene: RPSAP3 (ribosomal protein SA pseudogene 3) Homo sapiens
Analyze
Symbol: RPSAP3
Name: ribosomal protein SA pseudogene 3
RGD ID: 1352096
HGNC Page HGNC:19792
Description: INTERACTS WITH 17beta-estradiol; 5-azacytidine; bucladesine
Type: pseudo (Ensembl: transcribed_processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: laminin receptor 1 pseudogene 3; LAMR1P3; RPSA_21_1392
Related Functional Gene: RPSA  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381476,634,705 - 76,635,737 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1476,634,775 - 76,635,661 (-)EnsemblGRCh38hg38GRCh38
GRCh371477,101,048 - 77,102,080 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361476,170,705 - 76,171,936 (-)NCBINCBI36Build 36hg18NCBI36
Celera1457,139,720 - 57,140,766 (-)NCBICelera
Cytogenetic Map14q24.3NCBI
HuRef1457,269,964 - 57,271,000 (-)NCBIHuRef
CHM1_11477,038,809 - 77,039,845 (-)NCBICHM1_1
T2T-CHM13v2.01470,844,086 - 70,845,119 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:23
Count of miRNA genes:23
Interacting mature miRNAs:23
Transcripts:ENST00000464073
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 1
Low 159 131 195 15 139 13 132 81 150 18 344 195 5 1 55 76 2 2
Below cutoff 1854 2180 1217 394 1168 280 3351 1651 2805 261 958 1128 123 942 2155 3

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000464073
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1476,634,775 - 76,635,661 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPSAP3 COSMIC
Ensembl Genes ENSG00000242952 Ensembl, ENTREZGENE
GTEx ENSG00000242952 GTEx
HGNC ID HGNC:19792 ENTREZGENE
Human Proteome Map RPSAP3 Human Proteome Map
NCBI Gene 158674 ENTREZGENE
PharmGKB PA134959703 PharmGKB