PHB1P3 (PHB1 pseudogene 3) - Rat Genome Database

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Gene: PHB1P3 (PHB1 pseudogene 3) Homo sapiens
Analyze
Symbol: PHB1P3
Name: PHB1 pseudogene 3
RGD ID: 1351735
HGNC Page HGNC:8915
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: PHBP3; prohibitin pseudogene 3
Related Functional Gene: PHB1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38158,999,617 - 59,000,651 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl158,999,676 - 59,000,494 (+)EnsemblGRCh38hg38GRCh38
GRCh37159,465,289 - 59,466,323 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36159,237,888 - 59,238,754 (+)NCBINCBI36Build 36hg18NCBI36
Celera157,753,460 - 57,754,275 (+)NCBICelera
Cytogenetic Map1p32.1NCBI
HuRef157,576,509 - 57,577,324 (+)NCBIHuRef
CHM1_1159,580,736 - 59,581,551 (+)NCBICHM1_1
T2T-CHM13v2.0158,877,937 - 58,878,971 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:8244394   PMID:18397521  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:273
Count of miRNA genes:229
Interacting mature miRNAs:239
Transcripts:ENST00000412562
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 10 1 13 6 19 6 15 2 23 12 26 1
Below cutoff 785 844 586 179 363 107 1367 741 1080 191 426 555 73 420 936

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000412562
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl158,999,676 - 59,000,494 (+)Ensembl
RefSeq Acc Id: XR_017596
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 36159,237,888 - 59,238,754 (+)NCBI Archive

Additional Information

Database Acc Id Source(s)
COSMIC PHB1P3 COSMIC
Ensembl Genes ENSG00000228121 Ensembl
GTEx ENSG00000228121 GTEx
HGNC ID HGNC:8915 ENTREZGENE
Human Proteome Map PHB1P3 Human Proteome Map
NCBI Gene 391044 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-11-15 PHB1P3  PHB1 pseudogene 3  PHBP3  prohibitin pseudogene 3  Symbol and/or name change 19259463 PROVISIONAL